The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045072	Paracoccus kondratievae strain BJQ0001 chromosome 1, complete sequence	2255404	602954	609774	2255404		Acinetobacter_phage(50.0%)	8	NA	NA
WP_010392714.1|602954_604103_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	32.7	4.4e-42
WP_010392711.1|604223_604922_-	transcriptional repressor LexA	NA	E5DV74	Deep-sea_thermophilic_phage	37.5	1.3e-12
WP_152366656.1|605023_606205_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
WP_010392706.1|606217_606688_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_152366657.1|606684_607476_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.8	1.2e-59
WP_152366658.1|607485_608154_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	49.7	4.5e-39
WP_010392702.1|608146_609187_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.8	5.9e-62
WP_152366659.1|609183_609774_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	56.5	2.1e-56
>prophage 2
NZ_CP045072	Paracoccus kondratievae strain BJQ0001 chromosome 1, complete sequence	2255404	1545974	1564414	2255404	protease,tail,head,capsid,terminase,integrase,portal	Rhodobacter_phage(27.27%)	28	1554944:1554959	1573152:1573167
WP_152367036.1|1545974_1546301_-|head,tail	head-tail adaptor protein	head,tail	B4UTP9	Rhizobium_phage	34.9	1.3e-07
WP_152367037.1|1546297_1546666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367038.1|1546662_1547157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367039.1|1547217_1548519_-|capsid	phage major capsid protein	capsid	Q6JIM7	Burkholderia_virus	37.9	1.3e-58
WP_152367358.1|1548436_1549306_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	47.8	6.2e-57
WP_152367040.1|1549308_1550550_-|portal	phage portal protein	portal	M4QP41	Tetraselmis_viridis_virus	36.8	2.2e-63
WP_152367041.1|1550551_1552255_-|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	61.3	1.0e-188
WP_152367042.1|1552241_1552724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367359.1|1552870_1553158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367043.1|1553207_1553561_-	HNH endonuclease	NA	I3ULZ4	Rhodobacter_phage	59.3	1.3e-21
WP_152367044.1|1553679_1554423_-	hypothetical protein	NA	I3ULZ3	Rhodobacter_phage	37.7	2.2e-26
WP_152367045.1|1554419_1554992_-	hypothetical protein	NA	NA	NA	NA	NA
1554944:1554959	attL	GCAACCGCATCACCCG	NA	NA	NA	NA
WP_152367046.1|1555175_1555799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367047.1|1556001_1556655_-	methyltransferase	NA	A0A076GD02	Sinorhizobium_phage	58.5	1.7e-59
WP_152367048.1|1556651_1557155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367049.1|1557303_1557573_-	hypothetical protein	NA	A0A1X9HW32	Ruegeria_phage	68.4	1.2e-27
WP_152367050.1|1557958_1558291_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367051.1|1558538_1558901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367052.1|1558897_1559212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367053.1|1559363_1559690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367054.1|1559717_1560551_+	DUF2303 family protein	NA	NA	NA	NA	NA
WP_152367360.1|1560622_1560826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367055.1|1560822_1561107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367056.1|1561103_1561976_+	hypothetical protein	NA	A0A2R4ALQ5	Aeromonas_phage	62.7	1.0e-19
WP_152367057.1|1561968_1562247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367058.1|1562243_1562423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367059.1|1562415_1563138_+	hypothetical protein	NA	A0A291AUT5	Sinorhizobium_phage	56.5	3.2e-67
WP_152367060.1|1563319_1564414_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1573152:1573167	attR	CGGGTGATGCGGTTGC	NA	NA	NA	NA
>prophage 3
NZ_CP045072	Paracoccus kondratievae strain BJQ0001 chromosome 1, complete sequence	2255404	1634974	1664327	2255404	protease,head,capsid,terminase,transposase	uncultured_Caudovirales_phage(25.0%)	35	NA	NA
WP_152367091.1|1634974_1637200_+	AAA family ATPase	NA	A0A1B2LRS1	Wolbachia_phage	51.0	1.0e-74
WP_104492639.1|1637575_1637776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367092.1|1637768_1638146_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367093.1|1638288_1638633_+	HNH endonuclease	NA	A0A2D1GNP5	Pseudomonas_phage	58.7	1.8e-23
WP_152367094.1|1638765_1640070_+	DNA methylase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	40.8	3.0e-79
WP_152367095.1|1640066_1640324_+	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	65.7	9.2e-17
WP_152367096.1|1640335_1640854_-	DUF3489 domain-containing protein	NA	K4HZZ2	Acidithiobacillus_phage	39.0	3.0e-14
WP_152367097.1|1640950_1641175_-	hypothetical protein	NA	A0A0K0PVN5	Roseobacter_phage	47.9	4.6e-12
WP_152367098.1|1641304_1641775_+|terminase	phage terminase small subunit P27 family	terminase	A0A1X9I6K0	Streptococcus_phage	34.2	1.7e-16
WP_152367099.1|1641758_1643531_+|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	42.5	2.9e-117
WP_152367100.1|1644852_1645716_+|protease	Clp protease ClpP	protease	A0A141GEW1	Brucella_phage	53.0	5.8e-55
WP_152367101.1|1645726_1647010_+|capsid	phage major capsid protein	capsid	A0A141GEW2	Brucella_phage	43.2	9.1e-89
WP_152367102.1|1647090_1647531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367103.1|1647598_1648138_+	hypothetical protein	NA	A0A141GEW4	Brucella_phage	43.4	2.9e-28
WP_152367104.1|1648140_1648461_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_152367105.1|1648471_1648762_+	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	52.2	1.1e-13
WP_010399403.1|1648835_1649510_+	DUF882 domain-containing protein	NA	A0A0K1LLY2	Rhodobacter_phage	50.6	1.0e-43
WP_010399402.1|1649506_1649764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010399401.1|1649672_1649930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010399400.1|1650025_1650373_-	molecular chaperone DnaK	NA	NA	NA	NA	NA
WP_152367106.1|1650378_1651233_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	40.7	1.8e-53
WP_010399398.1|1651247_1652738_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	66.9	2.0e-172
WP_010399394.1|1653282_1653600_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_040602288.1|1653649_1654708_+	permease	NA	NA	NA	NA	NA
WP_152367107.1|1654763_1655924_+	MFS transporter	NA	NA	NA	NA	NA
WP_010399391.1|1655960_1656695_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	64.9	6.2e-82
WP_010399390.1|1656687_1657119_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	56.2	2.3e-36
WP_010399389.1|1657115_1658135_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_138918378.1|1658131_1658533_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_152367108.1|1659006_1659765_+	DUF5131 family protein	NA	A0A2P1A0W3	Gordonia_phage	45.5	1.6e-61
WP_152367109.1|1659792_1660701_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA	NA
WP_152367110.1|1660724_1661300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367111.1|1661302_1662454_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_152367112.1|1662453_1663605_-	N-6 DNA methylase	NA	J7I0U9	Acinetobacter_phage	31.1	2.3e-22
WP_152367113.1|1663546_1664327_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	41.6	3.8e-21
>prophage 1
NZ_CP045073	Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence	1513387	100009	108248	1513387		uncultured_virus(33.33%)	8	NA	NA
WP_010396222.1|100009_100297_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	53.3	1.7e-19
WP_010396224.1|100335_101973_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.7	5.5e-171
WP_010396230.1|102609_102837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010396232.1|102891_103098_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	51.6	2.5e-12
WP_152367408.1|103279_105100_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.0	5.3e-34
WP_010396240.1|105255_105942_+	aquaporin Z	NA	A0A1B1ISL4	uncultured_Mediterranean_phage	50.8	1.5e-05
WP_152367409.1|106116_106413_+	DUF2218 domain-containing protein	NA	NA	NA	NA	NA
WP_010396247.1|106472_108248_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	39.7	1.1e-39
>prophage 2
NZ_CP045073	Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence	1513387	149727	182050	1513387	terminase,tail,transposase	Pelagibaca_phage(48.57%)	43	NA	NA
WP_152367439.1|149727_150432_-	helix-turn-helix transcriptional regulator	NA	A0A1B0T6N0	Pelagibaca_phage	52.6	3.0e-65
WP_152367440.1|150761_151223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367441.1|151257_151518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367442.1|151638_151854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367443.1|151855_152722_+	chromosome partitioning protein ParB	NA	A0A1B0T6H9	Thiobacimonas_phage	52.0	2.5e-66
WP_152367444.1|152718_154845_+|transposase	transposase	transposase	A0A1B0T6N2	Pelagibaca_phage	67.9	2.9e-289
WP_152368141.1|154904_155645_+	AAA family ATPase	NA	A0A1B1P6Z7	Rhodovulum_phage	59.5	4.5e-72
WP_152367445.1|155641_156220_+	hypothetical protein	NA	A0A1B0T6M0	Pelagibaca_phage	55.3	6.4e-50
WP_152367446.1|156216_156585_+	hypothetical protein	NA	A0A1B0T6M5	Pelagibaca_phage	69.8	8.5e-40
WP_152367447.1|156581_156860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367448.1|156922_157771_+	DUF3164 family protein	NA	A0A1B0T6G5	Thiobacimonas_phage	47.8	5.3e-45
WP_152367449.1|157785_157965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367450.1|157991_158177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367451.1|158209_158479_+	DNA-binding protein HU	NA	A0A1B0T6M4	Pelagibaca_phage	49.4	3.1e-15
WP_152367452.1|158559_158784_+	hypothetical protein	NA	F8TVB1	EBPR_siphovirus	47.0	2.9e-06
WP_152367453.1|158780_159254_+	DUF1018 domain-containing protein	NA	A0A1B0T6H1	Thiobacimonas_phage	57.0	3.5e-38
WP_152367454.1|159223_159511_+	hypothetical protein	NA	M4T573	Rhodobacter_phage	50.7	3.2e-10
WP_152367455.1|159510_159933_+	hypothetical protein	NA	A0A1B1P702	Rhodovulum_phage	65.6	5.7e-40
WP_152367456.1|160031_160892_+	SH3 domain-containing protein	NA	A0A1B0T6G1	Thiobacimonas_phage	62.3	2.5e-98
WP_152367457.1|160902_161253_+	hypothetical protein	NA	A0A1B0T6I8	Thiobacimonas_phage	57.7	1.2e-22
WP_152367458.1|161249_161603_+	DUF2730 family protein	NA	A0A1B0T6F6	Thiobacimonas_phage	38.9	6.7e-18
WP_152367459.1|161602_161908_+	hypothetical protein	NA	A0A1B0T6F4	Thiobacimonas_phage	55.2	1.6e-20
WP_152367460.1|161909_162449_+	DUF3486 family protein	NA	A0A1B0T6K5	Pelagibaca_phage	54.5	9.5e-48
WP_152367461.1|162454_162634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367462.1|162630_164052_+|terminase	terminase	terminase	A0A1B1P714	Rhodovulum_phage	76.2	7.2e-204
WP_152367463.1|164051_165635_+	DUF935 family protein	NA	A0A1B0T6K0	Pelagibaca_phage	72.6	2.3e-211
WP_152367464.1|165637_166948_+	hypothetical protein	NA	A0A1B0T6K2	Pelagibaca_phage	57.4	2.7e-144
WP_152367465.1|167281_168301_+	hypothetical protein	NA	A0A1B0T6J6	Pelagibaca_phage	63.9	3.8e-114
WP_152367466.1|168303_168693_+	hypothetical protein	NA	A0A1B0T6J8	Pelagibaca_phage	74.4	2.7e-44
WP_152367467.1|168706_169606_+	hypothetical protein	NA	A0A1B0T6J4	Pelagibaca_phage	76.8	2.6e-130
WP_152367468.1|169670_170186_+	hypothetical protein	NA	A0A1B0T6K3	Pelagibaca_phage	51.8	2.4e-08
WP_152367469.1|170189_170621_+	DUF1320 domain-containing protein	NA	A0A1B0T6J3	Pelagibaca_phage	72.0	2.5e-51
WP_152367470.1|170622_171132_+	hypothetical protein	NA	A0A1B1P725	Rhodovulum_phage	57.9	3.2e-45
WP_152367471.1|171131_171578_+	hypothetical protein	NA	A0A1B0T6J9	Pelagibaca_phage	56.8	7.9e-40
WP_152367472.1|171589_172519_+	hypothetical protein	NA	A0A1B0T6J1	Pelagibaca_phage	63.1	2.2e-108
WP_152367473.1|172553_172925_+	hypothetical protein	NA	A0A1B0T6J2	Pelagibaca_phage	52.0	1.5e-28
WP_152367474.1|172987_173290_+	hypothetical protein	NA	A0A1B1P738	Rhodovulum_phage	49.5	7.3e-13
WP_152367475.1|173286_177072_+	hypothetical protein	NA	A0A1B0T6I6	Pelagibaca_phage	37.3	8.5e-167
WP_152367476.1|177068_177497_+	hypothetical protein	NA	M4SNS6	Rhodobacter_phage	50.7	9.6e-35
WP_152367477.1|177493_178021_+	hypothetical protein	NA	G8GWF8	Rhodobacter_phage	61.8	9.6e-53
WP_152367478.1|178017_178218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367479.1|178214_178661_+|tail	phage tail protein	tail	M4SRS7	Rhodobacter_phage	66.9	9.6e-54
WP_152368142.1|178744_182050_+|tail	phage tail protein	tail	G8GWG0	Rhodobacter_phage	52.3	0.0e+00
>prophage 3
NZ_CP045073	Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence	1513387	599594	695596	1513387	portal,capsid,transposase,terminase,integrase,protease,head	Acidithiobacillus_phage(22.92%)	95	598303:598320	700751:700768
598303:598320	attL	CTCGCAGGCCTCGCGCTG	NA	NA	NA	NA
WP_152367651.1|599594_599930_+|integrase	tyrosine-type recombinase/integrase	integrase	I3UM24	Rhodobacter_phage	49.4	9.5e-14
WP_152367652.1|600139_600502_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_152367653.1|600494_601034_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	41.3	4.6e-26
WP_152367654.1|601042_601468_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	72.3	3.6e-50
WP_152367655.1|601477_602533_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_152368151.1|602532_603249_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	75.1	3.9e-97
WP_152367656.1|603610_603841_+	helix-turn-helix domain-containing protein	NA	K4I3X3	Acidithiobacillus_phage	49.1	4.8e-09
WP_152367657.1|603948_604305_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367658.1|604442_604679_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367659.1|604662_606696_+	N-6 DNA methylase	NA	J7I0U9	Acinetobacter_phage	26.1	2.2e-28
WP_152367660.1|606692_608711_+	N-6 DNA methylase	NA	B3GAM1	uncultured_virus	30.4	3.2e-11
WP_152367113.1|609353_610134_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	41.6	3.8e-21
WP_152367661.1|610224_613185_+	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	41.3	8.0e-213
WP_152368152.1|613301_614216_+	DUF4268 domain-containing protein	NA	NA	NA	NA	NA
WP_152367662.1|614573_616406_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_152368153.1|616409_618368_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.5	3.7e-81
WP_018000059.1|619609_620992_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_018000060.1|621002_621674_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.4	7.5e-26
WP_152368154.1|621923_623369_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
WP_152368155.1|623407_624382_+	glycosyltransferase	NA	B9UDL7	Salmonella_phage	41.7	4.4e-59
WP_081614960.1|624375_624843_+	GtrA family protein	NA	NA	NA	NA	NA
WP_018000064.1|624712_624952_-	hypothetical protein	NA	A0A0K1LKR7	Rhodobacter_phage	61.8	2.0e-13
WP_018000065.1|625024_625315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367663.1|625325_625646_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_152367103.1|625648_626188_-	hypothetical protein	NA	A0A141GEW4	Brucella_phage	43.4	2.9e-28
WP_152367102.1|626255_626696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367101.1|626776_628060_-|capsid	phage major capsid protein	capsid	A0A141GEW2	Brucella_phage	43.2	9.1e-89
WP_152367664.1|628070_628937_-|protease	Clp protease ClpP	protease	A0A141GEW1	Brucella_phage	49.3	7.3e-58
WP_152368156.1|628923_630066_-|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	40.8	1.3e-73
WP_152367665.1|630258_632031_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	42.5	1.4e-116
WP_152367666.1|632014_632485_-|terminase	phage terminase small subunit P27 family	terminase	Q6DMU4	Streptococcus_phage	33.8	6.9e-18
WP_062563245.1|632536_632782_-	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	68.6	3.2e-19
WP_152367667.1|632778_634155_-	DNA methylase	NA	K4HZA5	Acidithiobacillus_phage	41.8	2.0e-78
WP_152368157.1|634261_634603_-	HNH endonuclease	NA	Q38456	Bacillus_phage	46.3	2.6e-19
WP_068282971.1|634767_635148_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
WP_028720215.1|635140_635341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152368158.1|635337_635808_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	62.2	1.2e-51
WP_152368159.1|635959_638074_-	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	62.6	1.1e-168
WP_152367668.1|638283_639030_-	hypothetical protein	NA	K4HZA0	Acidithiobacillus_phage	57.6	1.1e-75
WP_152367669.1|639029_639236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367670.1|639464_640655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367671.1|640626_641784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367672.1|641948_642560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367673.1|642618_643923_+	AAA family ATPase	NA	K4HZX9	Acidithiobacillus_phage	55.0	3.0e-79
WP_152367674.1|643925_644555_+	hypothetical protein	NA	A0A1B2LRU0	Wolbachia_phage	43.4	2.0e-25
WP_152367675.1|644567_646250_+	DEAD/DEAH box helicase	NA	A0A2D1GP10	Streptomyces_phage	37.7	1.4e-49
WP_152367676.1|646246_646450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367677.1|646446_646902_+	DUF2924 domain-containing protein	NA	Q9JML2	Wolbachia_phage	34.9	9.0e-15
WP_152367678.1|646898_648224_+	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	55.0	7.6e-123
WP_152367679.1|648220_648607_+	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	36.8	1.6e-12
WP_152367680.1|648690_649281_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_152367681.1|649280_650798_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	37.7	1.7e-81
WP_152368160.1|650835_651954_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_152367682.1|651950_652790_+	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_152367683.1|652786_656011_+	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	27.7	3.8e-67
WP_152367684.1|656007_656724_+	DUF45 domain-containing protein	NA	NA	NA	NA	NA
WP_152367685.1|657135_658872_-	sulfate permease	NA	NA	NA	NA	NA
WP_152367686.1|659003_660686_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_152368161.1|662157_663042_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_152368162.1|663133_663571_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_152367687.1|663575_664007_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_100651859.1|664008_664224_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_152367688.1|664348_665014_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367689.1|665010_665481_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_152367690.1|665615_666248_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_152367691.1|666695_668105_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_152367692.1|668117_669122_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_152367693.1|669121_669232_+	DUF2474 family protein	NA	NA	NA	NA	NA
WP_152367694.1|669690_670038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367695.1|671264_671966_-	VIT family protein	NA	NA	NA	NA	NA
WP_152367696.1|671962_673870_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.3	2.3e-59
WP_152367697.1|673875_674856_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_152367698.1|674836_677044_-	N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_152367699.1|677055_677526_-	DUF2271 domain-containing protein	NA	NA	NA	NA	NA
WP_152367700.1|678124_678796_-	cytochrome B	NA	NA	NA	NA	NA
WP_152367701.1|678788_679109_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_152367702.1|679272_679932_+	response regulator	NA	W8CYM9	Bacillus_phage	31.4	2.6e-23
WP_152367703.1|679928_681287_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_152367704.1|681308_681557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367705.1|681465_681723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367706.1|681719_682394_-	DUF882 domain-containing protein	NA	A0A0K1LLY2	Rhodobacter_phage	49.4	2.6e-42
WP_152367707.1|682467_682755_-	hypothetical protein	NA	K4I011	Acidithiobacillus_phage	52.6	5.8e-12
WP_152367708.1|682807_683155_-|head	phage head closure protein	head	B4UTP9	Rhizobium_phage	41.3	3.4e-14
WP_152367709.1|683154_683724_-	hypothetical protein	NA	A0A141GEW4	Brucella_phage	35.1	2.3e-20
WP_152367710.1|683801_684188_-	hypothetical protein	NA	A0A142K633	Streptomyces_phage	46.3	2.9e-14
WP_152367711.1|684255_685530_-|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	47.0	7.4e-91
WP_152367712.1|685540_686410_-|protease	Clp protease ClpP	protease	Q3HQS9	Burkholderia_phage	47.8	5.3e-56
WP_152367713.1|687958_689752_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	43.9	7.4e-121
WP_152367714.1|689735_690206_-|terminase	phage terminase small subunit P27 family	terminase	Q6DMU4	Streptococcus_phage	36.5	9.6e-20
WP_152367715.1|690224_690455_-	hypothetical protein	NA	K4I1E3	Acidithiobacillus_phage	70.4	1.5e-18
WP_152367716.1|690451_691843_-	DNA methylase	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	43.5	1.5e-89
WP_018000081.1|691980_692325_-	HNH endonuclease	NA	A0A2D1GNP5	Pseudomonas_phage	65.8	2.1e-24
WP_152367717.1|692464_692842_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367718.1|692834_693065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367719.1|693370_695596_-	AAA family ATPase	NA	A0A1B2LRS1	Wolbachia_phage	49.4	2.9e-74
700751:700768	attR	CAGCGCGAGGCCTGCGAG	NA	NA	NA	NA
>prophage 4
NZ_CP045073	Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence	1513387	1085548	1168581	1513387	integrase,transposase	Paenibacillus_phage(26.67%)	82	1120190:1120206	1146203:1146219
WP_114669439.1|1085548_1086305_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	36.4	7.7e-11
WP_085999836.1|1086320_1087102_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.4	3.1e-23
WP_152367936.1|1087391_1087772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367937.1|1087995_1088955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367938.1|1088966_1089326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367939.1|1089322_1089850_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_152367940.1|1089849_1091904_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_152367941.1|1091900_1093163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367942.1|1093259_1094642_+	transglycosylase SLT domain-containing protein	NA	A0A160DH98	Gordonia_phage	29.4	8.8e-05
WP_152367943.1|1094809_1098790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367944.1|1098913_1099525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367945.1|1099526_1099826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367946.1|1099873_1100230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367947.1|1100242_1101022_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
WP_152367948.1|1101018_1101705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367949.1|1101701_1102307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152368178.1|1102321_1103626_+	FliI/YscN family ATPase	NA	NA	NA	NA	NA
WP_152367950.1|1103648_1104122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367951.1|1104118_1105309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367952.1|1105308_1105953_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_152367953.1|1105959_1106214_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_152367954.1|1106210_1107047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367955.1|1107043_1108066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367956.1|1108718_1109102_+|transposase	transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	45.0	7.1e-05
WP_152367957.1|1109098_1109446_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	55.2	6.6e-26
WP_152367958.1|1109508_1111137_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	40.0	7.0e-102
WP_152367959.1|1111136_1111433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367960.1|1112641_1113682_-	RepB family plasmid replication initiator protein	NA	A0A0K1Y6J9	Rhodobacter_phage	40.8	1.9e-68
WP_152368179.1|1114027_1114594_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_152368180.1|1114740_1115592_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_152367961.1|1115584_1116562_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_152367962.1|1116859_1117408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367963.1|1117804_1118131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367964.1|1118498_1119842_+	molybdopterin-guanine dinucleotide biosynthesis protein MobA	NA	NA	NA	NA	NA
1120190:1120206	attL	GACACTTGCCGCCGCAA	NA	NA	NA	NA
WP_152367953.1|1120370_1120625_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_152367954.1|1120621_1121458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367965.1|1121454_1122477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367966.1|1122537_1123324_+|transposase	IS5-like element ISPme2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	41.8	3.4e-17
WP_152367967.1|1123525_1123798_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_152367968.1|1124199_1124925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367969.1|1125181_1128010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367970.1|1128006_1128198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367966.1|1128517_1129304_+|transposase	IS5-like element ISPme2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	41.8	3.4e-17
WP_122003605.1|1129310_1130539_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	64.7	2.6e-101
WP_152367971.1|1130689_1131076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367972.1|1131203_1131428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152367973.1|1131708_1131936_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367974.1|1132009_1132330_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_152367975.1|1132389_1132626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367976.1|1132997_1133228_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_152367977.1|1133438_1133966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367978.1|1133975_1136108_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_081465015.1|1136016_1137096_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_152367979.1|1137097_1138579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011746807.1|1138743_1140261_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_152367980.1|1140805_1141792_+	recombinase	NA	NA	NA	NA	NA
WP_011746810.1|1141835_1142834_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_152367981.1|1143795_1144881_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.2	3.0e-24
WP_049792290.1|1144905_1145958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011746813.1|1145954_1147205_+	ABC transporter permease	NA	NA	NA	NA	NA
1146203:1146219	attR	GACACTTGCCGCCGCAA	NA	NA	NA	NA
WP_011746814.1|1147201_1147987_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011746815.1|1148086_1148875_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011746816.1|1149119_1150049_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_152367982.1|1150065_1152129_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_011746818.1|1152140_1153907_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_152367983.1|1153903_1154668_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	24.7	8.9e-07
WP_152367984.1|1155050_1155503_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_152367985.1|1155556_1156171_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011746823.1|1156356_1157523_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011746824.1|1157519_1158293_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_081465017.1|1158377_1159667_+	MFS transporter	NA	NA	NA	NA	NA
WP_128492979.1|1159861_1160197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011746827.1|1160518_1160782_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_036747427.1|1160790_1161180_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_011746829.1|1162007_1162346_+	toxin RelE	NA	NA	NA	NA	NA
WP_152367986.1|1162327_1162627_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_152367987.1|1162736_1163120_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_152367988.1|1164032_1165754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367989.1|1165750_1166104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152367956.1|1166162_1166546_+|transposase	transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	45.0	7.1e-05
WP_152367957.1|1166542_1166890_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	55.2	6.6e-26
WP_152367958.1|1166952_1168581_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	40.0	7.0e-102
>prophage 5
NZ_CP045073	Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence	1513387	1379767	1415285	1513387	tRNA,capsid,tail,portal,protease,head	Dinoroseobacter_phage(23.08%)	34	NA	NA
WP_152368084.1|1379767_1380817_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_010394179.1|1380813_1381971_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_152368085.1|1381980_1383447_+	response regulator	NA	NA	NA	NA	NA
WP_029371612.1|1383531_1385790_+	PAS domain-containing sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	24.1	1.0e-05
WP_010394172.1|1385786_1387175_+	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	33.3	1.3e-08
WP_010394170.1|1387344_1388721_+	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_010394168.1|1388730_1390353_+	cation transporter	NA	NA	NA	NA	NA
WP_010394165.1|1390429_1390663_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_152368086.1|1390663_1391971_+	GTPase HflX	NA	NA	NA	NA	NA
WP_152368087.1|1392044_1392965_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_152368088.1|1392987_1394295_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_010394143.1|1394304_1395429_-	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_152368089.1|1395511_1396558_-	DUF2927 domain-containing protein	NA	NA	NA	NA	NA
WP_010394137.1|1396554_1397730_-	toxic anion resistance protein	NA	NA	NA	NA	NA
WP_010394134.1|1397966_1399229_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010394132.1|1399225_1400404_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010394130.1|1400665_1401028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152368090.1|1400978_1402319_+	ATP-binding protein	NA	A0A1V0DY66	Dinoroseobacter_phage	40.4	4.2e-76
WP_152368091.1|1402441_1403635_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.8	3.4e-61
WP_010394124.1|1403636_1403870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152368188.1|1403898_1404408_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	47.8	1.2e-31
WP_029371604.1|1404430_1405597_+|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	41.2	3.8e-65
WP_152368092.1|1405738_1406362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029371603.1|1406358_1406709_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_085501484.1|1406705_1407125_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_010394113.1|1407137_1407551_+|tail	phage major tail protein, TP901-1 family	tail	I3UM07	Rhodobacter_phage	36.6	1.6e-15
WP_050804162.1|1407501_1407870_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_152368093.1|1407866_1408205_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_152368189.1|1408107_1408773_+|tail	phage tail tape measure protein	tail	D6PFD6	uncultured_phage	35.1	1.9e-13
WP_085501483.1|1408776_1409409_+	DUF2460 domain-containing protein	NA	A0A0B5A2K3	Paracoccus_phage	47.1	1.0e-53
WP_152368094.1|1409405_1410224_+	DUF2163 domain-containing protein	NA	A0A0K0PVK1	Roseobacter_phage	39.9	5.0e-48
WP_152368095.1|1410220_1410658_+	peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	52.6	2.9e-34
WP_152368096.1|1410676_1414570_+	host specificity protein	NA	A0A0K1LL82	Rhodobacter_phage	37.7	3.2e-217
WP_010394098.1|1414562_1415285_+	DUF2793 domain-containing protein	NA	A0A1V0DY81	Dinoroseobacter_phage	32.6	1.2e-24
