assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009296005.1_ASM929600v1	NZ_CP045163	Yersinia pestis strain SCPM-O-B-6291 (C-25) chromosome, complete genome	1	1568206-1568327	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|73aa|down_0|NZ_CP045163.1_1568683_1568902_+	NA|685aa|up_9|NZ_CP045163.1_1554390_1556445_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NZ_CP045163.1_1556505_1556970_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NZ_CP045163.1_1557148_1557829_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NZ_CP045163.1_1558144_1558561_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NZ_CP045163.1_1558669_1558987_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NZ_CP045163.1_1559047_1560238_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NZ_CP045163.1_1560331_1560610_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NZ_CP045163.1_1560661_1560991_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NZ_CP045163.1_1564635_1567053_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NZ_CP045163.1_1567206_1567953_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NZ_CP045163.1_1568683_1568902_+	NA	NA|175aa|down_1|NZ_CP045163.1_1569165_1569690_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NZ_CP045163.1_1569679_1570963_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NZ_CP045163.1_1570964_1571702_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NZ_CP045163.1_1571717_1572956_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NZ_CP045163.1_1572948_1573668_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NZ_CP045163.1_1573669_1574422_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NZ_CP045163.1_1574424_1575213_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NZ_CP045163.1_1575299_1575740_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NZ_CP045163.1_1575777_1576026_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_009296005.1_ASM929600v1	NZ_CP045163	Yersinia pestis strain SCPM-O-B-6291 (C-25) chromosome, complete genome	2	1693265-1693472	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Unclear	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|16aa|up_7|NZ_CP045163.1_1684926_1684974_-,NA	NA|444aa|up_9|NZ_CP045163.1_1682409_1683741_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|300aa|up_8|NZ_CP045163.1_1683744_1684644_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|16aa|up_7|NZ_CP045163.1_1684926_1684974_-	NA	NA|276aa|up_6|NZ_CP045163.1_1685349_1686177_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|97aa|up_5|NZ_CP045163.1_1686331_1686622_-	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|332aa|up_4|NZ_CP045163.1_1687010_1688006_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|230aa|up_3|NZ_CP045163.1_1688002_1688692_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|298aa|up_2|NZ_CP045163.1_1688649_1689543_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|364aa|up_1|NZ_CP045163.1_1689828_1690920_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|464aa|up_0|NZ_CP045163.1_1691378_1692770_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	DEDDh|477aa|down_0|NZ_CP045163.1_1693506_1694937_-	PRK11779, sbcB, exonuclease I; Provisional	NA|370aa|down_1|NZ_CP045163.1_1695229_1696339_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|106aa|down_2|NZ_CP045163.1_1696772_1697090_+	PRK05423, PRK05423, DUF496 family protein	NA|403aa|down_3|NZ_CP045163.1_1697460_1698669_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1051aa|down_4|NZ_CP045163.1_1698631_1701784_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|435aa|down_5|NZ_CP045163.1_1702808_1704113_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|141aa|down_6|NZ_CP045163.1_1704121_1704544_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|247aa|down_7|NZ_CP045163.1_1704952_1705693_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|281aa|down_8|NZ_CP045163.1_1705740_1706583_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|426aa|down_9|NZ_CP045163.1_1706614_1707892_+	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
GCF_009296005.1_ASM929600v1	NZ_CP045163	Yersinia pestis strain SCPM-O-B-6291 (C-25) chromosome, complete genome	3	2567906-2568115	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Type I-F	TTTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTTCTAAGCTGCCTGTGCGGCAGTGAAC,TGTTCACTGCCGCACAGGCAGCTTAGAAAA	29,29,30	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	TypeI-F	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|70aa|up_9|NZ_CP045163.1_2555644_2555854_-,NA|425aa|down_1|NZ_CP045163.1_2570314_2571589_-,NA|372aa|down_2|NZ_CP045163.1_2571627_2572743_-	NA|70aa|up_9|NZ_CP045163.1_2555644_2555854_-	NA	NA|453aa|up_8|NZ_CP045163.1_2555977_2557336_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NZ_CP045163.1_2557382_2557886_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NZ_CP045163.1_2557896_2558916_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NZ_CP045163.1_2558993_2559548_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NZ_CP045163.1_2559558_2560563_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NZ_CP045163.1_2560580_2561531_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NZ_CP045163.1_2561527_2562874_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NZ_CP045163.1_2563282_2566570_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NZ_CP045163.1_2566566_2567547_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NZ_CP045163.1_2568451_2569696_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NZ_CP045163.1_2570314_2571589_-	NA	NA|372aa|down_2|NZ_CP045163.1_2571627_2572743_-	NA	NA|313aa|down_3|NZ_CP045163.1_2572865_2573804_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NZ_CP045163.1_2573830_2574886_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NZ_CP045163.1_2575032_2575857_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NZ_CP045163.1_2575857_2576733_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NZ_CP045163.1_2576841_2578128_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NZ_CP045163.1_2578399_2579440_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NZ_CP045163.1_2579456_2580845_+	PRK15414, PRK15414, phosphomannomutase
GCF_009296005.1_ASM929600v1	NZ_CP045163	Yersinia pestis strain SCPM-O-B-6291 (C-25) chromosome, complete genome	4	3178725-3178995	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	3178753-3178784	NZ_CP045163.1_2029325-2029294	I-F:I-F:I-F	4,4,3	4	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|194aa|down_5|NZ_CP045163.1_3190550_3191132_+,NA|84aa|down_9|NZ_CP045163.1_3193042_3193294_-	NA|272aa|up_9|NZ_CP045163.1_3164033_3164849_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|307aa|up_8|NZ_CP045163.1_3164858_3165779_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_7|NZ_CP045163.1_3165931_3167902_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_6|NZ_CP045163.1_3167933_3169067_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_5|NZ_CP045163.1_3169090_3170119_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_4|NZ_CP045163.1_3170130_3171678_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_3|NZ_CP045163.1_3171726_3172656_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|642aa|up_2|NZ_CP045163.1_3174042_3175968_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|NZ_CP045163.1_3176002_3177529_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|NZ_CP045163.1_3177866_3178721_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|183aa|down_0|NZ_CP045163.1_3179355_3179904_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|1993aa|down_1|NZ_CP045163.1_3180310_3186289_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|153aa|down_2|NZ_CP045163.1_3186403_3186862_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|771aa|down_3|NZ_CP045163.1_3187107_3189420_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_4|NZ_CP045163.1_3189632_3189878_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|194aa|down_5|NZ_CP045163.1_3190550_3191132_+	NA	NA|134aa|down_6|NZ_CP045163.1_3191399_3191801_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|down_7|NZ_CP045163.1_3192033_3192435_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|191aa|down_8|NZ_CP045163.1_3192446_3193019_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_9|NZ_CP045163.1_3193042_3193294_-	NA
GCF_009296005.1_ASM929600v1	NZ_CP045163	Yersinia pestis strain SCPM-O-B-6291 (C-25) chromosome, complete genome	5	4140901-4141012	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA	NA|268aa|up_9|NZ_CP045163.1_4124394_4125198_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NZ_CP045163.1_4125262_4126591_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NZ_CP045163.1_4126666_4128475_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NZ_CP045163.1_4128640_4129258_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|831aa|up_5|NZ_CP045163.1_4129479_4131972_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NZ_CP045163.1_4132570_4133944_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_3|NZ_CP045163.1_4134110_4134884_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NZ_CP045163.1_4135052_4136057_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NZ_CP045163.1_4136307_4137471_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NZ_CP045163.1_4137844_4140481_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|452aa|down_0|NZ_CP045163.1_4141222_4142577_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|295aa|down_1|NZ_CP045163.1_4142754_4143639_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|812aa|down_2|NZ_CP045163.1_4143871_4146307_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|106aa|down_3|NZ_CP045163.1_4147846_4148164_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|152aa|down_4|NZ_CP045163.1_4148512_4148968_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|72aa|down_5|NZ_CP045163.1_4149510_4149726_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_6|NZ_CP045163.1_4149968_4152167_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|282aa|down_7|NZ_CP045163.1_4153614_4154460_+	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|175aa|down_8|NZ_CP045163.1_4154559_4155084_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|down_9|NZ_CP045163.1_4155154_4156486_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU
