assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009295945.1_ASM929594v1	NZ_CP045149	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) chromosome, complete genome	1	55859-55971	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|111aa|up_4|NZ_CP045149.1_50955_51288_+,NA|68aa|up_2|NZ_CP045149.1_52240_52444_+,NA	NA|324aa|up_9|NZ_CP045149.1_44103_45075_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|225aa|up_8|NZ_CP045149.1_45071_45746_+	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|310aa|up_7|NZ_CP045149.1_45745_46675_+	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|463aa|up_6|NZ_CP045149.1_46858_48247_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|651aa|up_5|NZ_CP045149.1_48243_50196_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|111aa|up_4|NZ_CP045149.1_50955_51288_+	NA	NA|194aa|up_3|NZ_CP045149.1_51301_51883_-	pfam13988, DUF4225, Protein of unknown function (DUF4225)	NA|68aa|up_2|NZ_CP045149.1_52240_52444_+	NA	NA|410aa|up_1|NZ_CP045149.1_52592_53822_-	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter	NA|452aa|up_0|NZ_CP045149.1_54294_55649_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|879aa|down_0|NZ_CP045149.1_56390_59027_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NZ_CP045149.1_59400_60564_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NZ_CP045149.1_60814_61819_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|NZ_CP045149.1_61987_62761_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NZ_CP045149.1_62927_64301_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NZ_CP045149.1_64899_67392_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NZ_CP045149.1_67613_68231_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NZ_CP045149.1_68396_70205_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NZ_CP045149.1_70280_71609_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NZ_CP045149.1_71673_72477_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_009295945.1_ASM929594v1	NZ_CP045149	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) chromosome, complete genome	2	1020478-1020747	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	GTTCACTGCCGCACAGGCAGCTTAGA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	26,28,28	1	1	1020688-1020719	NZ_CP045149.1_2172138-2172107	I-F:I-F:I-F	4,4,4	4	Orphan	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|84aa|up_9|NZ_CP045149.1_1006178_1006430_+,NA|194aa|up_5|NZ_CP045149.1_1008340_1008922_-,NA	NA|84aa|up_9|NZ_CP045149.1_1006178_1006430_+	NA	NA|191aa|up_8|NZ_CP045149.1_1006453_1007026_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|134aa|up_7|NZ_CP045149.1_1007037_1007439_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|up_6|NZ_CP045149.1_1007671_1008073_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|194aa|up_5|NZ_CP045149.1_1008340_1008922_-	NA	NA|82aa|up_4|NZ_CP045149.1_1009594_1009840_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_3|NZ_CP045149.1_1010052_1012365_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|153aa|up_2|NZ_CP045149.1_1012610_1013069_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1993aa|up_1|NZ_CP045149.1_1013183_1019162_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP045149.1_1019568_1020117_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP045149.1_1020750_1021605_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NZ_CP045149.1_1021974_1023501_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NZ_CP045149.1_1023535_1025461_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NZ_CP045149.1_1026865_1027795_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NZ_CP045149.1_1027843_1029391_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NZ_CP045149.1_1029402_1030431_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NZ_CP045149.1_1030454_1031588_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NZ_CP045149.1_1031619_1033590_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|307aa|down_8|NZ_CP045149.1_1033742_1034663_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NZ_CP045149.1_1034672_1035488_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_009295945.1_ASM929594v1	NZ_CP045149	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) chromosome, complete genome	3	1629678-1630185	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	1629706-1629737|1629766-1629797	NZ_CP045149.1_2173421-2173452|NZ_CP045149.1_2177672-2177703	I-F:I-F:I-F	7,8,8	8	TypeI-F	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|372aa|up_2|NZ_CP045149.1_1625090_1626206_+,NA|425aa|up_1|NZ_CP045149.1_1626244_1627519_+,NA|70aa|down_9|NZ_CP045149.1_1642236_1642446_+	NA|463aa|up_9|NZ_CP045149.1_1616988_1618377_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NZ_CP045149.1_1618393_1619434_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NZ_CP045149.1_1619705_1620992_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NZ_CP045149.1_1621100_1621976_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NZ_CP045149.1_1621976_1622801_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP045149.1_1622947_1624003_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NZ_CP045149.1_1624029_1624968_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NZ_CP045149.1_1625090_1626206_+	NA	NA|425aa|up_1|NZ_CP045149.1_1626244_1627519_+	NA	NA|415aa|up_0|NZ_CP045149.1_1628095_1629340_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NZ_CP045149.1_1630544_1631525_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NZ_CP045149.1_1631521_1634809_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NZ_CP045149.1_1635216_1636563_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_3|NZ_CP045149.1_1636559_1637510_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NZ_CP045149.1_1637527_1638532_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP045149.1_1638542_1639097_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NZ_CP045149.1_1639174_1640194_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NZ_CP045149.1_1640204_1640708_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NZ_CP045149.1_1640754_1642113_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NZ_CP045149.1_1642236_1642446_+	NA
GCF_009295945.1_ASM929594v1	NZ_CP045149	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) chromosome, complete genome	4	2508718-2508927	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,AGGTTCACTGCCGCACAGGCAGCTTAGAAAAT	28,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA|16aa|down_7|NZ_CP045149.1_2517216_2517264_+	NA|426aa|up_9|NZ_CP045149.1_2494278_2495556_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NZ_CP045149.1_2495587_2496430_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NZ_CP045149.1_2496477_2497218_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NZ_CP045149.1_2497645_2498068_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NZ_CP045149.1_2498076_2499381_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NZ_CP045149.1_2500405_2503558_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NZ_CP045149.1_2503520_2504729_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NZ_CP045149.1_2505099_2505417_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NZ_CP045149.1_2505850_2506960_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NZ_CP045149.1_2507252_2508683_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NZ_CP045149.1_2509419_2510811_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NZ_CP045149.1_2511270_2512362_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NZ_CP045149.1_2512647_2513541_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|230aa|down_3|NZ_CP045149.1_2513498_2514188_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NZ_CP045149.1_2514184_2515180_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_5|NZ_CP045149.1_2515568_2515859_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_6|NZ_CP045149.1_2516013_2516841_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|NZ_CP045149.1_2517216_2517264_+	NA	NA|300aa|down_8|NZ_CP045149.1_2517546_2518446_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|NZ_CP045149.1_2518449_2519781_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
GCF_009295945.1_ASM929594v1	NZ_CP045149	Yersinia pestis strain SCPM-O-DNA-18 (I-3113) chromosome, complete genome	5	2633874-2633995	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|73aa|up_0|NZ_CP045149.1_2633298_2633517_-,NA	NA|83aa|up_9|NZ_CP045149.1_2626174_2626423_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NZ_CP045149.1_2626460_2626901_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NZ_CP045149.1_2626987_2627776_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NZ_CP045149.1_2627778_2628531_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NZ_CP045149.1_2628532_2629252_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NZ_CP045149.1_2629244_2630483_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NZ_CP045149.1_2630498_2631236_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NZ_CP045149.1_2631237_2632521_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NZ_CP045149.1_2632510_2633035_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NZ_CP045149.1_2633298_2633517_-	NA	NA|249aa|down_0|NZ_CP045149.1_2634247_2634994_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NZ_CP045149.1_2635147_2637565_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NZ_CP045149.1_2641210_2641540_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NZ_CP045149.1_2641591_2641870_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NZ_CP045149.1_2641963_2643154_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NZ_CP045149.1_2643214_2643532_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NZ_CP045149.1_2643640_2644057_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NZ_CP045149.1_2644372_2645053_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NZ_CP045149.1_2645231_2645696_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NZ_CP045149.1_2645756_2647811_-	PRK11054, helD, DNA helicase IV; Provisional
