The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP021855	Bradyrhizobium sp. TM102	7363142	1422647	1429803	7363142		Salmonella_phage(16.67%)	6	NA	NA
WP_038948865.1|1422647_1423112_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
WP_018321314.1|1423291_1423777_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	46.6	5.2e-21
WP_152102315.1|1423885_1424440_-	DUF924 family protein	NA	A0A1V0SIY0	Klosneuvirus	32.1	7.6e-16
WP_028140696.1|1424455_1426141_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.2	1.2e-43
WP_028140695.1|1426329_1427817_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.9	1.1e-29
WP_038973142.1|1428006_1429803_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.4	5.3e-34
>prophage 2
NZ_AP021855	Bradyrhizobium sp. TM102	7363142	4074587	4084710	7363142	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_028145383.1|4074587_4075616_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.2e-22
WP_018317872.1|4075612_4076452_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.3e-31
WP_028145382.1|4076473_4077238_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	9.1e-44
WP_028145381.1|4077405_4077639_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_028145380.1|4077727_4078243_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_028145379.1|4078239_4079055_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	47.6	4.2e-55
WP_028145378.1|4079192_4080524_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.4	1.6e-96
WP_028145377.1|4080618_4080981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018317879.1|4081078_4081846_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.0	3.1e-36
WP_008547195.1|4081949_4082321_-	response regulator	NA	NA	NA	NA	NA
WP_028144473.1|4082549_4083200_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	4.1e-29
WP_152102907.1|4083309_4084710_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	41.8	8.3e-19
>prophage 3
NZ_AP021855	Bradyrhizobium sp. TM102	7363142	4274602	4281361	7363142		Burkholderia_phage(50.0%)	6	NA	NA
WP_152102966.1|4274602_4275826_-	restriction endonuclease	NA	E5E3X4	Burkholderia_phage	47.2	2.9e-100
WP_152102967.1|4275827_4276277_-	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	57.0	2.0e-43
WP_152102968.1|4276269_4277493_-	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	53.7	1.0e-105
WP_152102969.1|4278402_4279515_-	response regulator	NA	W8CYM9	Bacillus_phage	35.1	4.3e-18
WP_152102970.1|4279544_4279910_-	response regulator	NA	W8CYM9	Bacillus_phage	27.4	1.2e-09
WP_173015840.1|4279906_4281361_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	36.7	3.1e-32
>prophage 4
NZ_AP021855	Bradyrhizobium sp. TM102	7363142	5818075	5825295	7363142		Escherichia_phage(50.0%)	7	NA	NA
WP_152103294.1|5818075_5819767_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.7	2.8e-13
WP_038972751.1|5819935_5821210_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	3.7e-74
WP_028143385.1|5821206_5821989_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_038972753.1|5822003_5822921_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.0	2.0e-66
WP_038972754.1|5823025_5823712_+	aldolase	NA	A0A077SK32	Escherichia_phage	47.8	6.7e-46
WP_028143388.1|5823875_5824580_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	1.7e-12
WP_028143389.1|5824563_5825295_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.0e-12
