The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	359541	366697	8442078		Bacillus_phage(16.67%)	6	NA	NA
WP_028140694.1|359541_361338_+	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.2	1.5e-33
WP_028140695.1|361527_363015_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.9	1.1e-29
WP_028140696.1|363203_364889_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.2	1.2e-43
WP_028140697.1|364904_365459_+	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	33.3	3.1e-17
WP_018321314.1|365567_366053_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	46.6	5.2e-21
WP_028140698.1|366232_366697_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	1.1e-44
>prophage 2
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	1745212	1820218	8442078	transposase	Caulobacter_phage(18.18%)	48	NA	NA
WP_011082855.1|1745212_1746322_-|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_011082854.1|1746478_1746769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082853.1|1747796_1749797_+	cytochrome c	NA	NA	NA	NA	NA
WP_011082852.1|1749922_1751155_+	cytochrome P450	NA	NA	NA	NA	NA
WP_109866565.1|1752425_1753555_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
WP_131233175.1|1753931_1754228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014490250.1|1756133_1756505_-	recombinase family protein	NA	NA	NA	NA	NA
WP_043900134.1|1758690_1759332_+	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	28.3	1.1e-13
WP_028144340.1|1760086_1762258_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	66.3	3.2e-227
WP_014490245.1|1762248_1763322_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A0K1LM33	Caulobacter_phage	55.9	3.2e-103
WP_011082837.1|1763543_1763867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014490241.1|1766498_1766750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011091022.1|1771038_1771335_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_011084703.1|1773638_1775150_+|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
WP_028144467.1|1776442_1777819_+	group II intron reverse transcriptase/maturase	NA	H7BVN7	unidentified_phage	25.8	7.9e-14
WP_011084757.1|1778171_1779518_+|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_011091019.1|1779755_1780034_+	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_018646329.1|1780030_1780186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016842696.1|1781504_1782980_+	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA	NA
WP_016842695.1|1783222_1784188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091014.1|1784270_1784774_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_085967914.1|1786070_1786547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091010.1|1786871_1787801_-	DUF2493 domain-containing protein	NA	B0VK20	Azospirillum_phage	35.9	6.1e-10
WP_018646331.1|1788524_1789427_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011091007.1|1789788_1790856_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011091004.1|1795454_1795868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011091003.1|1795966_1797703_-	hypothetical protein	NA	G8DH78	Emiliania_huxleyi_virus	29.9	1.6e-16
WP_016847009.1|1797776_1798817_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.8	6.4e-24
WP_016847010.1|1798929_1799226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091000.1|1799627_1799981_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	45.8	5.1e-18
WP_011090996.1|1801706_1802705_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_011090995.1|1802701_1803043_+	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_026312513.1|1803042_1803318_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_011090993.1|1803325_1805764_+	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_011090992.1|1805760_1806519_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_011090991.1|1806529_1806850_+	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA	NA
WP_011090990.1|1806846_1808208_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_011090989.1|1808211_1808901_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_011090988.1|1808897_1809977_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011090987.1|1809967_1811170_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011090986.1|1811166_1811391_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_011090985.1|1811513_1812455_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_161170741.1|1812463_1813060_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_026312514.1|1814693_1815611_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_125459388.1|1816497_1816716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049801880.1|1816757_1818311_-	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
WP_016848068.1|1818507_1819077_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498128.1|1819444_1820218_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	35.2	3.3e-09
>prophage 3
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	1827016	1888195	8442078	head,transposase,protease	Shigella_phage(20.0%)	49	NA	NA
WP_085967575.1|1827016_1828146_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_016846393.1|1828249_1828408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129964954.1|1828642_1828861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090970.1|1828844_1829516_+	bifunctional DNA primase/polymerase	NA	K4I049	Providencia_phage	31.0	3.0e-14
WP_011090969.1|1829472_1829865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090968.1|1829879_1831307_+	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	47.1	1.1e-111
WP_011090967.1|1831651_1832260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090966.1|1832457_1832991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090964.1|1833744_1834023_+|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
WP_011090963.1|1834019_1834235_+|head,protease	HK97 family phage prohead protease	head,protease	NA	NA	NA	NA
WP_011090962.1|1834249_1834702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071916953.1|1834705_1834885_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_011090961.1|1834862_1836269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090960.1|1836285_1836489_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.2	1.1e-09
WP_014498624.1|1836874_1837105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154694125.1|1837656_1837881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090958.1|1838752_1839037_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_014498627.1|1839941_1840184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016846398.1|1840187_1840427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090957.1|1840423_1840666_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_011090956.1|1840771_1841014_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498629.1|1841081_1841339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090955.1|1841986_1846312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084508.1|1847046_1847304_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014497999.1|1847873_1848095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|1848619_1848964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090954.1|1849120_1849519_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_011090953.1|1849515_1849872_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_085967575.1|1850275_1851405_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090948.1|1855120_1856872_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
WP_014498636.1|1856868_1857732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090946.1|1857722_1858769_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_011090941.1|1860252_1860603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162130962.1|1860914_1861241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090937.1|1862281_1863043_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.1	1.3e-66
WP_011090930.1|1867057_1868191_+	FAD-dependent oxidoreductase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
WP_011090921.1|1871869_1872274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498652.1|1872509_1872776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|1873745_1874288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090919.1|1874587_1876087_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
WP_011090918.1|1876086_1876950_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090917.1|1876954_1877992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090916.1|1877954_1878623_-	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_011090915.1|1879066_1879903_+	porin family protein	NA	NA	NA	NA	NA
WP_011090914.1|1879835_1881167_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_016846553.1|1883641_1884715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498608.1|1885829_1886495_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_014498607.1|1886961_1887846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498606.1|1887865_1888195_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	4497495	4504716	8442078		Escherichia_phage(50.0%)	7	NA	NA
WP_028143389.1|4497495_4498227_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.0e-12
WP_028143388.1|4498210_4498915_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	1.7e-12
WP_028143387.1|4499079_4499766_-	aldolase	NA	A0A077SK32	Escherichia_phage	47.8	6.7e-46
WP_028143386.1|4499870_4500788_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.3	2.4e-67
WP_028143385.1|4500802_4501585_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_028143384.1|4501581_4502856_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	41.7	4.1e-73
WP_028143383.1|4503024_4504716_+	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.2	2.2e-13
>prophage 5
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	6038263	6045023	8442078		Burkholderia_phage(50.0%)	6	NA	NA
WP_173015840.1|6038263_6039718_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	36.7	3.1e-32
WP_152102970.1|6039714_6040080_+	response regulator	NA	W8CYM9	Bacillus_phage	27.4	1.2e-09
WP_152102969.1|6040109_6041222_+	response regulator	NA	W8CYM9	Bacillus_phage	35.1	4.3e-18
WP_152102968.1|6042132_6043356_+	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	53.7	1.0e-105
WP_152102967.1|6043348_6043798_+	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	57.0	2.0e-43
WP_152102966.1|6043799_6045023_+	restriction endonuclease	NA	E5E3X4	Burkholderia_phage	47.2	2.9e-100
>prophage 6
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	6235191	6245314	8442078	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_028144474.1|6235191_6236592_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	41.8	8.3e-19
WP_028144473.1|6236701_6237352_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	4.1e-29
WP_008547195.1|6237580_6237952_+	response regulator	NA	NA	NA	NA	NA
WP_018317879.1|6238055_6238823_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.0	3.1e-36
WP_028145377.1|6238920_6239283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028145378.1|6239377_6240709_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	49.4	1.6e-96
WP_028145379.1|6240846_6241662_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	47.6	4.2e-55
WP_028145380.1|6241658_6242174_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_028145381.1|6242262_6242496_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_028145382.1|6242663_6243428_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	9.1e-44
WP_018317872.1|6243449_6244289_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.3e-31
WP_028145383.1|6244285_6245314_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.2e-22
>prophage 7
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	7713783	7754175	8442078	integrase,tRNA,transposase,protease	Corynebacterium_phage(25.0%)	38	7724235:7724251	7768179:7768195
WP_171463837.1|7713783_7714971_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	34.8	8.5e-49
WP_161170728.1|7715082_7715352_+	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	52.5	9.3e-12
WP_018647460.1|7715433_7715658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084951.1|7715803_7717021_-	acyltransferase	NA	NA	NA	NA	NA
WP_080588799.1|7717924_7718338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497725.1|7719083_7719620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028144011.1|7720761_7721664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026312707.1|7721660_7723211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028144010.1|7723353_7724352_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
7724235:7724251	attL	CGTCCTGCATCCAGATC	NA	NA	NA	NA
WP_011084941.1|7724506_7725850_-	cytochrome P450	NA	S4VQU1	Pandoravirus	33.5	1.6e-11
WP_011084940.1|7725849_7726695_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.7	6.4e-14
WP_014497729.1|7726699_7726990_-	ferredoxin	NA	NA	NA	NA	NA
WP_028144009.1|7726991_7728281_-	cytochrome P450	NA	NA	NA	NA	NA
WP_011084938.1|7728375_7729581_-	cytochrome P450	NA	NA	NA	NA	NA
WP_011084937.1|7729597_7729903_-	cytochrome P450	NA	NA	NA	NA	NA
WP_014497731.1|7730125_7730563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084934.1|7731153_7731969_-|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
WP_157158178.1|7732409_7732781_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497734.1|7732991_7734212_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_014497735.1|7734211_7734832_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_155256178.1|7735186_7735354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084930.1|7735760_7736894_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_014497736.1|7736913_7738491_-|tRNA	class I tRNA ligase family protein	tRNA	NA	NA	NA	NA
WP_011084928.1|7738492_7738822_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011084927.1|7738846_7739626_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_014497737.1|7739591_7740896_-	MFS transporter	NA	NA	NA	NA	NA
WP_039229672.1|7740892_7742218_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_014497739.1|7742564_7742768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162130951.1|7743762_7743981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063615340.1|7743892_7744441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084921.1|7744676_7744961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171463836.1|7745832_7746741_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_011084918.1|7747652_7748435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085967718.1|7748431_7749067_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_011084914.1|7751240_7751447_+	cold-shock protein	NA	NA	NA	NA	NA
WP_014497747.1|7751741_7752272_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_011084912.1|7752317_7752887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|7753110_7754175_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
7768179:7768195	attR	CGTCCTGCATCCAGATC	NA	NA	NA	NA
>prophage 8
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	7882049	7926846	8442078	transposase	Acidithiobacillus_phage(50.0%)	27	NA	NA
WP_011084799.1|7882049_7882430_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497829.1|7882437_7883073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647405.1|7885289_7886234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084794.1|7888417_7889458_-	pectinesterase	NA	NA	NA	NA	NA
WP_028143995.1|7889676_7891209_-	polygalacturonase	NA	NA	NA	NA	NA
WP_028143996.1|7892731_7893901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647407.1|7893903_7897338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084789.1|7897334_7897973_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_028143997.1|7897962_7899519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038973182.1|7899867_7900134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011084781.1|7902911_7903277_+	Nif11 family protein	NA	NA	NA	NA	NA
WP_038951316.1|7903942_7904461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084778.1|7904507_7904900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084777.1|7905600_7907580_+	RiPP maturation radical SAM protein 1	NA	NA	NA	NA	NA
WP_011084776.1|7907893_7908121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071916452.1|7908504_7909851_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.6	6.5e-45
WP_014497843.1|7910227_7910383_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084772.1|7910463_7910763_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497844.1|7910968_7913287_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_154694111.1|7915071_7915212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162130978.1|7915328_7915499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647915.1|7916476_7917268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497849.1|7919901_7920093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084755.1|7920110_7922564_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_144038025.1|7923746_7924507_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
WP_028144470.1|7924927_7925764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|7925781_7926846_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	8133909	8182375	8442078	transposase	Acidithiobacillus_phage(40.0%)	27	NA	NA
WP_144038027.1|8133909_8134670_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084678.1|8135052_8136861_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_028144451.1|8139017_8139593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084669.1|8144640_8144847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|8145400_8145943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084665.1|8147082_8147628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084664.1|8147735_8148119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084662.1|8148702_8148996_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011084661.1|8149138_8150149_+|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
WP_028144278.1|8150479_8152723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084659.1|8153149_8154391_-	cytochrome P450	NA	NA	NA	NA	NA
WP_011084658.1|8154941_8155823_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_152104178.1|8156007_8157489_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_014497924.1|8158895_8159804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084653.1|8160266_8160701_-	VirK protein	NA	NA	NA	NA	NA
WP_011084652.1|8161299_8162367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084649.1|8164380_8165070_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_018647881.1|8165096_8166551_+	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
WP_011084647.1|8166561_8167224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084646.1|8167419_8169735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028144280.1|8170027_8171437_-	group II intron reverse transcriptase/maturase	NA	H7BVN7	unidentified_phage	32.0	1.8e-13
WP_014497992.1|8172921_8173653_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.9e-63
WP_041960889.1|8175662_8176997_+|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
WP_011084638.1|8177126_8177333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084637.1|8178167_8178569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|8179571_8180636_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_049802026.1|8181343_8182375_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	8213232	8274709	8442078	transposase	Mycobacterium_phage(20.0%)	51	NA	NA
WP_011084514.1|8213232_8214297_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_161170740.1|8215689_8215986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497956.1|8218053_8219163_+	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_173019842.1|8219219_8220488_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_011084586.1|8221516_8222071_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_011084585.1|8222077_8222626_+	alkyl hydroperoxide reductase AhpD	NA	NA	NA	NA	NA
WP_011084584.1|8222837_8223134_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_011084583.1|8223172_8224480_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_014497958.1|8224491_8225601_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_011084580.1|8226551_8226893_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA	NA
WP_011084579.1|8227547_8228366_-	nitrogen fixation protein NifQ	NA	NA	NA	NA	NA
WP_011084578.1|8228469_8229354_-	nitrogenase iron protein	NA	NA	NA	NA	NA
WP_011084576.1|8229921_8230347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018647470.1|8230556_8231300_+	OmpW family protein	NA	NA	NA	NA	NA
WP_011084574.1|8231706_8232054_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_011084572.1|8232773_8233118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497964.1|8233151_8233511_-	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_014497965.1|8233449_8233767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028153326.1|8233763_8234078_-	nitrogen fixation protein NifZ	NA	NA	NA	NA	NA
WP_011084569.1|8234328_8234553_-	ferredoxin-like protein in nif region	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	47.7	2.0e-07
WP_041960893.1|8234563_8236123_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA	NA
WP_011084566.1|8236810_8237035_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA	NA
WP_028144283.1|8237031_8238213_-	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	37.9	1.1e-35
WP_011084564.1|8238536_8238857_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_014497969.1|8239116_8239707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084562.1|8239728_8240112_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_152104189.1|8240710_8241445_-	host specificity protein	NA	NA	NA	NA	NA
WP_011084559.1|8242436_8242730_-	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
WP_026312876.1|8242740_8242935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084557.1|8242954_8243419_-	NifX-associated nitrogen fixation protein	NA	NA	NA	NA	NA
WP_011084556.1|8243425_8243821_-	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
WP_011084555.1|8243817_8245227_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA	NA
WP_011084554.1|8245236_8246880_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
WP_011084553.1|8246972_8248529_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
WP_011084552.1|8248594_8250097_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
WP_039228620.1|8251908_8252973_-|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_011084548.1|8253116_8253311_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011084547.1|8253849_8254962_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_011084546.1|8255346_8256393_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_028144448.1|8256389_8257532_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_028144449.1|8257528_8259274_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_085967575.1|8259557_8260687_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084541.1|8261535_8261877_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011084538.1|8263058_8263610_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011084536.1|8264487_8264778_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_014497983.1|8265413_8266106_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_011084532.1|8266110_8267901_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_011084531.1|8267914_8269006_-	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011084529.1|8271370_8272687_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_110115972.1|8272809_8273569_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
WP_011084514.1|8273644_8274709_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_AP021854	Bradyrhizobium sp. SG09	8442078	8280205	8359508	8442078	integrase,transposase	Acidithiobacillus_phage(27.27%)	49	8356318:8356336	8374841:8374859
WP_039228626.1|8280205_8281474_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497992.1|8282814_8283546_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.9e-63
WP_011084521.1|8283554_8284133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071916611.1|8284590_8288916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028144443.1|8289188_8291441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084515.1|8291860_8293657_+	recombinase family protein	NA	NA	NA	NA	NA
WP_152104180.1|8293704_8294769_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_035666406.1|8294811_8295012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039156384.1|8296254_8297802_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	1.1e-83
WP_011090953.1|8297855_8298212_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084509.1|8298761_8299106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497999.1|8299630_8299852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039156381.1|8301411_8306553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497992.1|8306732_8307464_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.9e-63
WP_014498004.1|8309658_8310000_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
WP_011084500.1|8309996_8310500_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
WP_014498006.1|8311224_8312604_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_014498007.1|8312929_8313118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084497.1|8314053_8314368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084496.1|8314364_8314655_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_152104181.1|8315127_8315888_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	34.7	2.7e-08
WP_014498011.1|8316053_8316716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011084490.1|8317886_8319749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080586833.1|8322408_8322618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028144459.1|8323173_8323674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498022.1|8326264_8327029_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_014498023.1|8327025_8328300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498024.1|8328296_8329178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049802053.1|8329158_8331033_-	ATPase	NA	NA	NA	NA	NA
WP_049802052.1|8331026_8332748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028144376.1|8332784_8333990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080588800.1|8333986_8335711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498031.1|8336995_8337442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020608182.1|8337843_8338596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084471.1|8340198_8341005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170739.1|8341293_8342025_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_014498036.1|8342442_8342742_+	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	34.7	4.1e-08
WP_011084467.1|8343370_8343574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498039.1|8344288_8345827_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_038951335.1|8346726_8348076_+|transposase	IS701-like element ISBj6 family transposase	transposase	NA	NA	NA	NA
WP_085967392.1|8348125_8348886_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
WP_014498042.1|8349319_8349511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084458.1|8350929_8351736_+	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.0e-05
WP_038975124.1|8353249_8353981_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.9e-63
WP_026312792.1|8354700_8355189_-	hypothetical protein	NA	NA	NA	NA	NA
8356318:8356336	attL	GCAGTGCGGATGCGGCAGG	NA	NA	NA	NA
WP_018647863.1|8356846_8357062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080584307.1|8358009_8358198_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2L1IV28	Escherichia_phage	36.7	1.6e-05
WP_011084451.1|8358762_8359080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084450.1|8359097_8359508_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
8374841:8374859	attR	CCTGCCGCATCCGCACTGC	NA	NA	NA	NA
