assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009017295.1_ASM901729v1	NZ_CP044957	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 chromosome, complete genome	1	3013465-3014940	1,1,1,2,2	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	22,23,23,23,22	23	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP044957.1_3005331_3006093_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP044957.1_3006073_3007123_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP044957.1_3007119_3007599_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP044957.1_3007598_3008309_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP044957.1_3008327_3008639_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP044957.1_3008829_3009186_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP044957.1_3009203_3009809_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP044957.1_3009795_3011235_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP044957.1_3011244_3012153_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP044957.1_3012403_3013450_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP044957.1_3015036_3015330_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP044957.1_3015329_3016250_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP044957.1_3016246_3016897_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP044957.1_3016878_3017625_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP044957.1_3017635_3018694_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP044957.1_3018707_3019268_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP044957.1_3019264_3020821_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP044957.1_3020832_3023496_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP044957.1_3023940_3024894_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP044957.1_3024981_3025716_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009017295.1_ASM901729v1	NZ_CP044957	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 chromosome, complete genome	2	3031072-3032687	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,26,25	26	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_CP044957.1_3017635_3018694_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP044957.1_3018707_3019268_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP044957.1_3019264_3020821_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP044957.1_3020832_3023496_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP044957.1_3023940_3024894_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP044957.1_3024981_3025716_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP044957.1_3025791_3027504_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP044957.1_3027503_3029303_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP044957.1_3029726_3030089_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP044957.1_3030176_3030974_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP044957.1_3032983_3033655_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP044957.1_3033790_3035089_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP044957.1_3035171_3036809_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP044957.1_3037036_3037837_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP044957.1_3038604_3038901_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP044957.1_3038866_3039223_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP044957.1_3039306_3041541_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP044957.1_3041592_3042888_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP044957.1_3042945_3045702_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP044957.1_3045745_3046888_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_009017295.1_ASM901729v1	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	1	95392-95549	1	PILER-CR	no		csa3	Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|114aa|up_9|NZ_CP044958.1_87465_87807_+,NA|120aa|up_8|NZ_CP044958.1_87811_88171_+,NA|60aa|up_7|NZ_CP044958.1_88222_88402_+,NA|235aa|up_6|NZ_CP044958.1_88398_89103_+,NA|140aa|up_5|NZ_CP044958.1_89135_89555_-,NA|166aa|down_0|NZ_CP044958.1_95738_96236_-,NA|68aa|down_1|NZ_CP044958.1_96250_96454_-,NA|59aa|down_3|NZ_CP044958.1_99806_99983_-,NA|386aa|down_5|NZ_CP044958.1_101937_103095_-,NA|274aa|down_7|NZ_CP044958.1_104293_105115_-,NA|67aa|down_9|NZ_CP044958.1_106101_106302_-	NA|114aa|up_9|NZ_CP044958.1_87465_87807_+	NA	NA|120aa|up_8|NZ_CP044958.1_87811_88171_+	NA	NA|60aa|up_7|NZ_CP044958.1_88222_88402_+	NA	NA|235aa|up_6|NZ_CP044958.1_88398_89103_+	NA	NA|140aa|up_5|NZ_CP044958.1_89135_89555_-	NA	NA|795aa|up_4|NZ_CP044958.1_89642_92027_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_3|NZ_CP044958.1_92277_92880_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_CP044958.1_92891_93128_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP044958.1_93283_93880_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP044958.1_94271_95153_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|166aa|down_0|NZ_CP044958.1_95738_96236_-	NA	NA|68aa|down_1|NZ_CP044958.1_96250_96454_-	NA	NA|819aa|down_2|NZ_CP044958.1_96904_99361_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_3|NZ_CP044958.1_99806_99983_-	NA	NA|585aa|down_4|NZ_CP044958.1_99997_101752_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_5|NZ_CP044958.1_101937_103095_-	NA	NA|275aa|down_6|NZ_CP044958.1_103454_104279_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_7|NZ_CP044958.1_104293_105115_-	NA	NA|236aa|down_8|NZ_CP044958.1_105397_106105_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_9|NZ_CP044958.1_106101_106302_-	NA
