The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	638997	789717	5491452	tRNA,transposase,integrase,protease	Mycobacterium_phage(20.83%)	109	660984:661001	788734:789749
WP_050593748.1|638997_639648_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_023861906.1|639660_640050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085978605.1|640115_641714_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	29.7	1.2e-45
WP_003877203.1|641774_642869_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.9	1.0e-56
WP_003875800.1|642948_643134_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_011723733.1|643280_644375_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_019732695.1|644485_645355_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_019732696.1|645626_646289_-	FABP family protein	NA	NA	NA	NA	NA
WP_003877205.1|646434_646737_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003875806.1|646738_647572_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_019732697.1|647608_648079_-	DUF4395 domain-containing protein	NA	NA	NA	NA	NA
WP_009974936.1|648301_648721_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_019732698.1|648717_649530_-	mannan chain length control protein LmeA	NA	NA	NA	NA	NA
WP_019732699.1|649698_650481_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.5	9.1e-15
WP_019732700.1|650477_651428_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_009974939.1|651590_652715_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A2R8FEI2	Cedratvirus	47.7	4.5e-07
WP_003877208.1|652766_653810_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_009974941.1|653806_654721_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003875815.1|654733_655510_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.8e-16
WP_003875816.1|655696_656365_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_019732806.1|656423_658448_-	LCP family protein	NA	NA	NA	NA	NA
WP_019732805.1|658748_659882_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003875819.1|659888_660911_-	acyl-ACP desaturase	NA	NA	NA	NA	NA
660984:661001	attL	GTCCGGCGCGGCAAACGG	NA	NA	NA	NA
WP_023861897.1|661095_661710_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
660984:661001	attL	GTCCGGCGCGGCAAACGG	NA	NA	NA	NA
WP_019732397.1|661778_662852_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_009974946.1|662868_663075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003877217.1|663128_663530_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	31.9	4.6e-07
WP_019732396.1|663573_664107_-	nucleoside deaminase	NA	S4VYZ2	Pandoravirus	39.3	5.6e-16
WP_019732395.1|664161_665058_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023900268.1|665389_665845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_132160402.1|666102_668130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080772691.1|668142_669375_-|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	26.6	3.5e-13
WP_141244155.1|669596_669956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_132160400.1|673309_674380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057969464.1|677239_678133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094494180.1|678337_679450_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
WP_151834790.1|680563_682510_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P7C7	Bacillus_phage	27.6	7.3e-05
WP_007172599.1|683127_684219_-|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	33.7	1.1e-42
WP_007172118.1|686187_686904_+	ParA family protein	NA	NA	NA	NA	NA
WP_007172119.1|686903_687794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075630248.1|688069_689152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050594176.1|689516_690254_+	C40 family peptidase	NA	A0A1W6DXV0	Rhodococcus_phage	50.0	2.1e-21
WP_007172122.1|690201_690873_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172123.1|691194_691617_+	WhiB family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172124.1|691609_691933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046184891.1|691947_692433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172126.1|692448_692613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033717261.1|692801_693410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172469.1|701113_701575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_132160395.1|702046_702403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101930859.1|702571_703468_+	DUF4226 domain-containing protein	NA	NA	NA	NA	NA
WP_007172131.1|703741_703957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172469.1|705387_705849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047324300.1|705838_708085_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_033717226.1|708093_709176_-|integrase	tyrosine-type recombinase/integrase	integrase	S5MBZ0	Brevibacillus_phage	29.9	5.5e-10
WP_007172134.1|711458_711776_+	hypothetical protein	NA	NA	NA	NA	NA
709665:709682	attR	GTCCGGCGCGGCAAACGG	NA	NA	NA	NA
WP_007172135.1|711780_712080_+	DUF2694 family protein	NA	NA	NA	NA	NA
709665:709682	attR	GTCCGGCGCGGCAAACGG	NA	NA	NA	NA
WP_007172136.1|712125_713871_+	PPE domain-containing protein	NA	NA	NA	NA	NA
WP_007172137.1|713867_714008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172138.1|714004_714391_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_101930854.1|714460_715138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033717256.1|715137_715470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172141.1|715757_716045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172142.1|716063_718418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172144.1|718789_719095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151834792.1|719091_719295_-	antitoxin	NA	NA	NA	NA	NA
WP_007172147.1|719804_721295_+	type VII secretion protein EccB	NA	NA	NA	NA	NA
WP_007172148.1|721368_722424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172149.1|722413_725512_+	type VII secretion protein EccCb	NA	A0A0A0RUH6	Bacillus_phage	30.1	1.2e-20
WP_007172150.1|725508_725925_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_101930858.1|726164_726458_+	PE domain-containing protein	NA	NA	NA	NA	NA
WP_007172152.1|726473_727955_+	PPE family protein	NA	NA	NA	NA	NA
WP_007172153.1|728033_728336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910680.1|728384_728678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172155.1|728674_729616_+	ESX secretion-associated protein EspG	NA	NA	NA	NA	NA
WP_007172156.1|730384_731266_+	MinD/ParA family protein	NA	NA	NA	NA	NA
WP_007172157.1|731262_732759_+	type VII secretion integral membrane protein EccD	NA	V5UN55	Mycobacterium_phage	26.3	4.0e-11
WP_007172159.1|734394_735939_+	type VII secretion protein EccE	NA	NA	NA	NA	NA
WP_080691135.1|736004_736826_+	DUF2637 domain-containing protein	NA	V5UP70	Mycobacterium_phage	32.1	1.6e-17
WP_040624275.1|736920_738324_+	type IV secretory system conjugative DNA transfer family protein	NA	V5UN59	Mycobacterium_phage	38.4	3.0e-16
WP_007172162.1|738523_738802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172163.1|738901_739720_-	hypothetical protein	NA	V5UQM8	Mycobacterium_phage	28.8	2.4e-10
WP_057969768.1|739709_740099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_168209844.1|740235_740670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046182038.1|740666_741749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073877513.1|741759_742683_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_101930857.1|742792_743035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080691140.1|743289_745944_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_007172171.1|745940_748100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172172.1|748096_749902_+	AAA family ATPase	NA	V5UQM2	Mycobacterium_phage	27.2	1.8e-53
WP_065133523.1|751945_753460_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	26.1	3.5e-15
WP_033711543.1|753456_754269_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_047324006.1|754377_754683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172175.1|754950_756747_-	DEAD/DEAH box helicase family protein	NA	A0A2I5ARD8	Synechococcus_phage	23.8	8.2e-11
WP_007172176.1|756793_758350_-	serine/threonine protein kinase	NA	M1HJA5	Acanthocystis_turfacea_Chlorella_virus	35.0	1.9e-19
WP_052955353.1|758556_764418_-	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_007172179.1|764707_765220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172180.1|765247_765742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073877504.1|766941_767460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930856.1|767531_768164_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_007172184.1|768340_768811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047324007.1|768807_771009_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_007172186.1|771005_772730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172192.1|777976_779086_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A220NQQ9	Corynebacterium_phage	29.9	2.3e-08
WP_109398841.1|779079_781338_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_007172194.1|781327_781768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151834793.1|781993_782293_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_007172196.1|784519_785140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085989547.1|788456_789717_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	53.5	7.2e-70
788734:789749	attR	CCAACGAGATTCTGAAGCGAGCGGCAAGTTTCTTCGGGGCGGAGCTCGACCGCCAACACAAGAAATAGTCGATTTCATCGACGACAATCGCGGGGAGTTCGGGGTCGAGCCCATCTGCACGGTCCTGCGCAGCGCAGGCTTGCAGGTGGCCCTGAGCACCTACTACGACGCCAAAGCCCGGGTCCCATCGGCGCGGGCCCTGCGCGACGCCGTCCTCGGGCCGGCGTTGTGCCAGCTCTGGAAAGACAACTACTGCGTCTATGGGGCCCGCAAACTCTGGAAAACGGCTCGTCGCGATGGTCATGACGTCGGTCGCGATCAGGTGGCCCGGCTGATGCGGGCCGCAGGCATTGAGGGGGTCCGGCGCGGCAAACGGGTGCGGACCACCAAAGCTGACCCAGCCGCGGCGCGGCACCCGGACTTGGTGCACCGCAACTTCGCCGCGGCTGCCCCGAACCAGCTCTGGGTGACCGACCTGACATTCGTGCCGACCTGGGCCGGGGTGGCCTACGTGTGCTTCATCATTGACGCACACTCGCGGATGATCGTGGGGTGGCGGGTGGCTTCGCACATGCGGACCTCGATGGTTCTCGACGCGTTGGAGATGGCGCGTTGGTCACGCGGAACTACATTGCAGGACTTGATATGTCACTCAGATGCCGGGTCGCAATTCACGTCCATTCGCTACGGCGAGCGGCTCGCTGAGATCGGCGCAGTCCCGTCAATTGGGACCGTTGGAGATAGTTTCGATAACGCTCTCGCGGAGACAGTCAACGGTTACTACAAGGCCGAGCTGATCTACGGGCCGGCTCGAAGCAGACCGTGGAAGACCGTCGAGGACGTAGAACTCGCCACCCTCAGTTGGGTCCACTGGCACAACACCAGCCGCCTGCACAGCTACCTCGGCGACATCCCACCCACGGAGTTCGAAGCCGCGTTCTACGATGCATACCGGACCGACCAACCCTTGATCGGAATCCAATAGCCCGAGCCTCCGGGAAACCCAGGGCGCTTCA	NA	NA	NA	NA
>prophage 2
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	805979	862264	5491452	transposase,integrase	Mycobacterium_phage(25.0%)	39	846724:846740	876951:876967
WP_046187320.1|805979_807254_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	48.2	2.2e-98
WP_033711543.1|808031_808844_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_151834795.1|808840_810400_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	26.1	3.6e-15
WP_047324229.1|810743_811886_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_007172209.1|811962_812619_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_007172211.1|815598_816051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170826177.1|816065_816542_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_007172213.1|816574_816910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721564.1|816896_818288_-	DUF1446 domain-containing protein	NA	NA	NA	NA	NA
WP_007172215.1|818284_818458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172216.1|818914_820069_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_033721567.1|820109_821297_+	thiolase family protein	NA	NA	NA	NA	NA
WP_033721568.1|821308_821698_+	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA	NA
WP_157679851.1|821749_822295_+|transposase	transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	61.8	6.7e-41
WP_007172220.1|822688_824236_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	29.6	9.4e-48
WP_007172221.1|824298_825498_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_109398801.1|826137_826920_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_046184313.1|827134_827935_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_007172224.1|828322_829876_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.2	1.4e-35
WP_007172225.1|829968_831027_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_033721541.1|831371_832823_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046184315.1|833270_833882_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172228.1|833938_835237_+	cytochrome P450	NA	NA	NA	NA	NA
WP_007172229.1|835248_835440_+	ferredoxin	NA	NA	NA	NA	NA
WP_007172230.1|835561_836620_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046186391.1|839510_841298_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.1	1.8e-82
WP_007172236.1|842010_843249_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
WP_007172237.1|843580_843904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172975555.1|844041_844932_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172240.1|844978_846544_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
846724:846740	attL	TTCGACCACCACGCCTC	NA	NA	NA	NA
WP_047324300.1|848950_851197_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_033717226.1|851205_852288_-|integrase	tyrosine-type recombinase/integrase	integrase	S5MBZ0	Brevibacillus_phage	29.9	5.5e-10
WP_165589950.1|853848_854244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172251.1|854277_854415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172252.1|854409_855189_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_007172254.1|855541_855991_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_033721584.1|857582_858284_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172469.1|859566_860028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047324300.1|860017_862264_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
876951:876967	attR	GAGGCGTGGTGGTCGAA	NA	NA	NA	NA
>prophage 3
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	892093	972451	5491452	transposase,integrase	Pseudomonas_phage(22.22%)	50	903748:903800	983441:983493
WP_079669096.1|892093_893602_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_033721569.1|895874_897383_-	carboxylesterase/lipase family protein	NA	A0A0M4JT58	Mollivirus	32.8	8.1e-28
WP_033721570.1|897515_898412_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007172283.1|898464_898905_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_170826128.1|898953_899547_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172286.1|899721_901215_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_007172287.1|901211_902309_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
903748:903800	attL	GGGTCACAGCACAACGTAACAACACGAAGTAACTGCACCTACGAACTTAAGGA	NA	NA	NA	NA
WP_007172288.1|903830_904376_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_085989547.1|905305_906567_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	53.5	7.2e-70
WP_007172563.1|911961_912381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172294.1|912485_913679_-	cytochrome P450	NA	NA	NA	NA	NA
WP_033717422.1|913744_914326_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033717424.1|914971_915595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139652.1|915579_916191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172298.1|916881_917958_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_007172299.1|917954_918278_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172300.1|918418_919546_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_033711551.1|921210_922665_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	33.0	2.8e-54
WP_094494180.1|923619_924732_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
WP_007172498.1|924800_925850_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
WP_007168379.1|929513_930158_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007168380.1|930207_930648_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_007168381.1|930700_931597_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019732564.1|931644_931860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168383.1|932389_933838_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.6	4.4e-55
WP_007168385.1|934584_935175_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007168386.1|935262_936564_+	cytochrome P450	NA	NA	NA	NA	NA
WP_074021704.1|936575_936767_+	ferredoxin	NA	NA	NA	NA	NA
WP_033717470.1|936899_937916_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033712834.1|938108_938978_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_057969459.1|939054_939759_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023900852.1|939785_940454_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007168393.1|940588_941425_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007168394.1|941443_942367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168395.1|942363_944010_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_007168396.1|944084_945608_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007168397.1|945604_946573_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_033712835.1|946750_948208_+	cytochrome P450	NA	NA	NA	NA	NA
WP_007168400.1|948204_948861_+	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_085981616.1|948893_950510_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	24.5	1.6e-26
WP_033712837.1|950558_951701_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033711234.1|952087_952414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007168405.1|955558_956431_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_007168406.1|956583_956859_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_007168407.1|956858_957251_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_007168413.1|962316_963270_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_172417559.1|963266_964832_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172497.1|966417_968361_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007172498.1|968357_969407_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
WP_109233510.1|971149_972451_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.4	5.0e-34
983441:983493	attR	GGGTCACAGCACAACGTAACAACACGAAGTAACTGCACCTACGAACTTAAGGA	NA	NA	NA	NA
>prophage 4
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	981521	1055536	5491452	transposase,integrase	Staphylococcus_phage(21.43%)	46	989665:989724	1054356:1055610
WP_046184758.1|981521_982874_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.6	6.3e-32
WP_007168431.1|983501_983828_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172498.1|988614_989664_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
989665:989724	attL	CGCCGCTCCGCCTTCCCCCACCGAGATGCAGACAGCATCCATCCGTGCTCAGCGCTTGTG	NA	NA	NA	NA
WP_094494180.1|989732_990845_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
WP_007168435.1|991645_992164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930905.1|992232_993327_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007168437.1|994718_995885_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VF00	Mycobacterium_phage	29.1	1.6e-07
WP_167380263.1|998614_999487_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_033711543.1|999552_1000365_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_065133523.1|1000361_1001876_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	26.1	3.5e-15
WP_007172236.1|1002333_1003572_+|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
WP_082147682.1|1003700_1004198_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_139823067.1|1004353_1006657_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007168443.1|1006894_1007326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168449.1|1009966_1011595_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	25.3	6.7e-28
WP_007168450.1|1011647_1012589_+	R2-like ligand-binding oxidase	NA	NA	NA	NA	NA
WP_007168451.1|1012795_1013221_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_101930904.1|1013238_1014363_+	thiolase family protein	NA	NA	NA	NA	NA
WP_007168453.1|1014429_1015323_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_151834796.1|1015353_1016973_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	28.1	1.1e-30
WP_050790029.1|1017220_1018342_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_007168458.1|1020016_1021234_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_095762073.1|1023340_1023859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141244865.1|1023888_1026381_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_033710464.1|1026377_1027550_-|integrase	site-specific integrase	integrase	S5M9V8	Brevibacillus_phage	25.4	1.2e-07
WP_007168461.1|1028817_1030224_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_007168462.1|1030270_1030417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007168467.1|1032546_1032873_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_007168468.1|1033221_1033500_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_154074411.1|1033496_1033652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168470.1|1033727_1034177_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_040622630.1|1035437_1036520_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_033711551.1|1038609_1040064_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	33.0	2.8e-54
WP_033711281.1|1040607_1041045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136244823.1|1041130_1041412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167310147.1|1041541_1041730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080691073.1|1042328_1042889_-|transposase	transposase	transposase	A0A220NQR7	Corynebacterium_phage	38.6	1.7e-10
WP_158514285.1|1043025_1043241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080711236.1|1043179_1043425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075362207.1|1043400_1043712_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_172975527.1|1045136_1046591_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	32.8	3.7e-54
WP_007168486.1|1049566_1049908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007168487.1|1049928_1050336_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_033711258.1|1050339_1050612_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_007172498.1|1053305_1054355_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
WP_094494180.1|1054423_1055536_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
1054356:1055610	attR	CGCCGCTCCGCCTTCCCCCACCGAGATGCAGACAGCATCCATCCGTGCTCAGCGCTTGTGCGTGAACCTCACGCTGCAGCCCGAACCGTGTCCCCGGAGAGCCGGTTAACGGATAGTGGGTTGTTGGACCAGATCTGCCGCCAAATTTGTTTGGGGAAGGCGGTGAAGGCGAGCAGGTCGGCGCGGGCGTCTTCGAGGTGGTCGGCGACCTTGGGGAGCTTGTCGGCCAGTGCGTCGATGATGCGGTCATATTGGGCTGCAACGGAACCGGCGTCAGGTTGATCGAAGACCGAATGCAGTAGTGTGCGTACCCACGGCCACGATGATTTCGGAGTGATGGCCATCAGGTTGGTGGCGTAGTGGGTGCGACACCGTTGCCACGATGCCCCAGGCAGGGTGGCGCCGATCGCGGCCACCAGACCGGCGTGGGCGTCGGAAGTGACCAGACGGACCCCTGATAGGCCGCGGGCGGTCAGCGACCGCAGGAAGGTCAGCCAGCCGGCCCCGTCCTCGGCGGTGGTGACGTCGATGCCCAGGATTTCGCGGTAGCCCTCGGCGTTGACCCCGGTGGCGATCAGCGCGTGCACGTTGACCACCCGGCCTGCTTCGCGAACCTTGAGCACCAGGGCGTCAGCAGCCATGAACGTGTACGGGCCTGCATCCAGTGGCCGGGTCCGGAACGCCTCGACCGCGGCGTCGAGCTCTTTGGCCATCACGCTGACCTGGGACTTCGACAAGCTGGTGATGCCCAGAGTCTCGACGAGTTTGTCCATCCGCCGCGTCGAAACGCCCAGCAGGTAGCAGGTAGCCACCACCGTGGTCAGGGCCCGCTCGGCGCGTTTGCGCCGTTCCAGCAGCCAGTCCGGGAAGTACGAACCTTGCCTTAGCTTGGGAATCGCCAGATCCAATGTGCCTGCGCGGGTGTCAAACTCGCGGTGCCGATACCCGTTGCGGGAATTGGTGCGCTCGCTGCTGCGCTGGCCGTAGCCGGCACCGCACACCGCGTCGGCTTCGGCGCCCATCAGGGCGTGAATGAAGGCGGCCAACAACTCGCGCAGCACATCAGGGTGCGTGGTGGTGAGTCGTTCGGCCAGCACGGCAGACAGGTCGATATCGTGGGCAATGGTCATCGCGTTGATTCCTTTGCTCGAGTGACTTTGGTCGGTCCCTCGAAGAATCACGCGATGACCTTCATTCATCCGGCTACGACACGCCGGTCATCACCGGCTCGTACACCACTCTGCTGGACGCAACT	NA	NA	NA	NA
>prophage 5
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	3148828	3243227	5491452	transposase,integrase	uncultured_virus(12.5%)	59	3148928:3148945	3245316:3245333
WP_011725525.1|3148828_3150061_-|transposase	IS256-like element IS1245 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	51.5	2.5e-112
3148928:3148945	attL	GACCTGCCATTCGTCGTG	NA	NA	NA	NA
WP_008257410.1|3151257_3152499_-	cytochrome P450	NA	NA	NA	NA	NA
WP_008257411.1|3152729_3153155_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_008257412.1|3153986_3155051_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_008257414.1|3155047_3155968_+	TIGR03619 family F420-dependent LLM class oxidoreductase	NA	NA	NA	NA	NA
WP_014942237.1|3156096_3159462_+	AAA family ATPase	NA	A0A218MLZ2	uncultured_virus	25.6	4.3e-13
WP_008257415.1|3159584_3159965_+	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008257416.1|3160729_3161074_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_033717548.1|3161064_3162354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008257418.1|3162346_3163285_+	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA	NA
WP_008257421.1|3163288_3163852_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_008257429.1|3163848_3164151_+	NADH-quinone oxidoreductase subunit K	NA	NA	NA	NA	NA
WP_008257430.1|3164168_3166001_+	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_008257434.1|3167511_3168915_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
WP_008257509.1|3169441_3170803_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_151834884.1|3170799_3171654_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	37.2	7.0e-37
WP_008257437.1|3172376_3173573_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	26.5	3.9e-25
WP_008257440.1|3175538_3176585_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA	NA
WP_075362378.1|3177621_3178644_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
WP_008257445.1|3179425_3179692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008257447.1|3179885_3181160_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	33.0	8.6e-31
WP_008257450.1|3181193_3182564_-	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_008257453.1|3182741_3184625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008257454.1|3184621_3185932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033717552.1|3185928_3186345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008257463.1|3186341_3187316_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_008257465.1|3187312_3188251_-	alpha/beta fold hydrolase	NA	A0A0B5A484	Mycobacterium_phage	38.4	4.7e-10
WP_008257468.1|3188247_3188907_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008257471.1|3189794_3190520_+	response regulator transcription factor	NA	B5LWA6	Feldmannia_species_virus	32.1	9.0e-09
WP_008257473.1|3190512_3191928_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_033717554.1|3192145_3193441_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_008257477.1|3193496_3193724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008257479.1|3194232_3194940_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_172975540.1|3195339_3196716_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
WP_008257484.1|3196838_3201386_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.4	3.5e-34
WP_008257486.1|3201405_3206436_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.2	4.4e-94
WP_014942254.1|3206694_3207252_+	acetyltransferase	NA	NA	NA	NA	NA
WP_008257491.1|3207417_3208176_+	thioesterase	NA	NA	NA	NA	NA
WP_014942255.1|3209472_3212574_+	nocobactin polyketide synthase NbtC	NA	NA	NA	NA	NA
WP_033717539.1|3214328_3214535_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_008257498.1|3214615_3216871_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.3	3.6e-104
WP_033717556.1|3216891_3217488_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_033717542.1|3218120_3219494_+	PPE domain-containing protein	NA	NA	NA	NA	NA
WP_008257501.1|3219663_3219954_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_008257502.1|3220513_3220900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008257503.1|3221136_3222234_+	PLP-dependent cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	33.4	5.0e-35
WP_014942259.1|3222315_3223338_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
WP_008257505.1|3223418_3224702_+	alanine racemase	NA	NA	NA	NA	NA
WP_033720686.1|3224749_3226108_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_008257507.1|3226156_3227407_+	MFS transporter	NA	NA	NA	NA	NA
WP_008257435.1|3229009_3229861_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	37.3	8.3e-38
WP_008257509.1|3229857_3231219_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_151834886.1|3231307_3231511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172236.1|3234358_3235597_+|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
WP_085978347.1|3236736_3238006_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	50.4	1.2e-53
WP_008257522.1|3238192_3238390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043955763.1|3238515_3239823_+	ATP-binding protein	NA	X5I2M2	Pseudomonas_phage	27.8	1.1e-09
WP_036428947.1|3240291_3240570_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172498.1|3242177_3243227_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
3245316:3245333	attR	CACGACGAATGGCAGGTC	NA	NA	NA	NA
>prophage 6
NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5491452	4143989	4150561	5491452		Bacillus_phage(33.33%)	7	NA	NA
WP_011725757.1|4143989_4146107_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	9.4e-208
WP_003874934.1|4146124_4146577_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
WP_003874933.1|4146619_4146859_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
WP_003874932.1|4147388_4147943_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
WP_033712612.1|4148036_4148651_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023895998.1|4148650_4149694_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	28.2	8.6e-21
WP_023895997.1|4149628_4150561_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	4.6e-05
>prophage 1
NZ_AP020327	Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1	191151	91159	99768	191151		Mycobacterium_phage(88.89%)	10	NA	NA
WP_095785525.1|91159_91507_-	DUF4031 domain-containing protein	NA	A0A0K1Y4M8	Klebsiella_phage	42.7	1.3e-10
WP_095785524.1|91503_92403_-	alpha/beta hydrolase	NA	A0A0N7GFE0	Mycobacterium_phage	30.0	2.5e-08
WP_095785523.1|93376_93757_-	hypothetical protein	NA	A0A222ZKW4	Mycobacterium_phage	48.5	6.8e-16
WP_095785522.1|93753_94893_-	phage Gp37/Gp68 family protein	NA	A0A0F6SJL4	Mycobacterium_phage	50.9	4.3e-90
WP_151834957.1|94892_95543_-	hypothetical protein	NA	W8EHE6	Mycobacterium_phage	61.8	1.3e-46
WP_172975574.1|95726_95882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151834958.1|96225_96669_+	XRE family transcriptional regulator	NA	V5UN35	Mycobacterium_phage	52.6	2.1e-29
WP_095785519.1|96668_97169_+	hypothetical protein	NA	V5UP92	Mycobacterium_phage	53.3	9.5e-42
WP_095785518.1|97165_98362_+	hypothetical protein	NA	V5UNW9	Mycobacterium_phage	43.6	9.4e-80
WP_095785517.1|98364_99768_+	cytochrome P450	NA	V5UQK0	Mycobacterium_phage	62.3	9.1e-167
