assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	1	1794959-1795034	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	GCAGGAGGAGCGGCGCTGATGTCT	24	1	1	1794983-1795010	NZ_AP020326.1_1878226-1878199	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA|105aa|up_8|NZ_AP020326.1_1783421_1783736_+,NA	NA|511aa|up_9|NZ_AP020326.1_1781892_1783425_+	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown]	NA|105aa|up_8|NZ_AP020326.1_1783421_1783736_+	NA	NA|551aa|up_7|NZ_AP020326.1_1783980_1785633_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|473aa|up_6|NZ_AP020326.1_1785629_1787048_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|442aa|up_5|NZ_AP020326.1_1787051_1788377_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|361aa|up_4|NZ_AP020326.1_1788373_1789456_+	PRK07409, PRK07409, threonine synthase; Validated	NA|317aa|up_3|NZ_AP020326.1_1789482_1790433_+	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]	NA|618aa|up_2|NZ_AP020326.1_1790700_1792554_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|81aa|up_1|NZ_AP020326.1_1792655_1792898_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|358aa|up_0|NZ_AP020326.1_1792994_1794068_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|408aa|down_0|NZ_AP020326.1_1795714_1796938_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|161aa|down_1|NZ_AP020326.1_1797153_1797636_+	pfam03899, ATP-synt_I, ATP synthase I chain	NA|253aa|down_2|NZ_AP020326.1_1797628_1798387_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|83aa|down_3|NZ_AP020326.1_1798471_1798720_+	PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated	NA|178aa|down_4|NZ_AP020326.1_1798729_1799263_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|555aa|down_5|NZ_AP020326.1_1800677_1802342_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|305aa|down_6|NZ_AP020326.1_1802348_1803263_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|486aa|down_7|NZ_AP020326.1_1803291_1804749_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|122aa|down_8|NZ_AP020326.1_1804788_1805154_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|148aa|down_9|NZ_AP020326.1_1805171_1805615_+	pfam10739, DUF2550, Protein of unknown function (DUF2550)
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	2	2454503-2454585	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	AGGAGCCGGGCGATTCAGCTTGGGCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA|290aa|up_4|NZ_AP020326.1_2448864_2449734_+,NA|298aa|down_3|NZ_AP020326.1_2457901_2458795_+,NA|227aa|down_4|NZ_AP020326.1_2458798_2459479_-	NA|146aa|up_9|NZ_AP020326.1_2444562_2445000_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|413aa|up_8|NZ_AP020326.1_2445034_2446273_+	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|130aa|up_7|NZ_AP020326.1_2446269_2446659_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|242aa|up_6|NZ_AP020326.1_2446746_2447472_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|430aa|up_5|NZ_AP020326.1_2447468_2448758_-	PRK13375, pimE, mannosyltransferase; Provisional	NA|290aa|up_4|NZ_AP020326.1_2448864_2449734_+	NA	NA|163aa|up_3|NZ_AP020326.1_2449754_2450243_+	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like	NA|463aa|up_2|NZ_AP020326.1_2450334_2451723_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|482aa|up_1|NZ_AP020326.1_2451719_2453165_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|397aa|up_0|NZ_AP020326.1_2453300_2454491_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|135aa|down_0|NZ_AP020326.1_2454666_2455071_+	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|506aa|down_1|NZ_AP020326.1_2455064_2456582_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|350aa|down_2|NZ_AP020326.1_2456586_2457636_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|298aa|down_3|NZ_AP020326.1_2457901_2458795_+	NA	NA|227aa|down_4|NZ_AP020326.1_2458798_2459479_-	NA	NA|201aa|down_5|NZ_AP020326.1_2459598_2460201_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|134aa|down_6|NZ_AP020326.1_2460579_2460981_+	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|144aa|down_7|NZ_AP020326.1_2461463_2461895_+	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|387aa|down_8|NZ_AP020326.1_2461869_2463030_+	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|664aa|down_9|NZ_AP020326.1_2464298_2466290_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	3	2721690-2721788	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA,NA	NA|273aa|up_9|NZ_AP020326.1_2713218_2714037_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|196aa|up_8|NZ_AP020326.1_2714150_2714738_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|295aa|up_7|NZ_AP020326.1_2714758_2715643_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|607aa|up_6|NZ_AP020326.1_2715787_2717608_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|218aa|up_5|NZ_AP020326.1_2717631_2718285_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NZ_AP020326.1_2718330_2719041_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NZ_AP020326.1_2719222_2719660_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NZ_AP020326.1_2719883_2720726_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NZ_AP020326.1_2720679_2721081_+	cd08355, TioX_like, Micromonospora sp	NA|104aa|up_0|NZ_AP020326.1_2721232_2721544_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|492aa|down_0|NZ_AP020326.1_2722583_2724059_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_1|NZ_AP020326.1_2724055_2725231_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_2|NZ_AP020326.1_2725227_2726457_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|148aa|down_3|NZ_AP020326.1_2726621_2727065_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_4|NZ_AP020326.1_2727125_2727506_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|140aa|down_5|NZ_AP020326.1_2727618_2728038_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_6|NZ_AP020326.1_2728350_2728671_+	pfam00226, DnaJ, DnaJ domain	NA|506aa|down_7|NZ_AP020326.1_2728724_2730242_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_8|NZ_AP020326.1_2730779_2731337_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|254aa|down_9|NZ_AP020326.1_2731384_2732146_-	PRK06500, PRK06500, SDR family oxidoreductase
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	4	3920599-3920681	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	ACGGCGCGAGCAAGGAGGCGGACATTGG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA,NA	NA|452aa|up_9|NZ_AP020326.1_3909650_3911006_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|361aa|up_8|NZ_AP020326.1_3911011_3912094_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|332aa|up_7|NZ_AP020326.1_3912098_3913094_-	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms	NA|217aa|up_6|NZ_AP020326.1_3913215_3913866_+	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|310aa|up_5|NZ_AP020326.1_3913874_3914804_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|595aa|up_4|NZ_AP020326.1_3914971_3916756_-	PRK05855, PRK05855, SDR family oxidoreductase	NA|303aa|up_3|NZ_AP020326.1_3916759_3917668_-	COG3687, COG3687, Predicted metal-dependent hydrolase [General function prediction only]	NA|154aa|up_2|NZ_AP020326.1_3917851_3918313_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|374aa|up_1|NZ_AP020326.1_3918424_3919546_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|342aa|up_0|NZ_AP020326.1_3919542_3920568_-	pfam03060, NMO, Nitronate monooxygenase	NA|425aa|down_0|NZ_AP020326.1_3920682_3921957_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|758aa|down_1|NZ_AP020326.1_3922042_3924316_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|90aa|down_2|NZ_AP020326.1_3924726_3924996_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|325aa|down_3|NZ_AP020326.1_3925130_3926105_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|235aa|down_4|NZ_AP020326.1_3926218_3926923_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|419aa|down_5|NZ_AP020326.1_3927085_3928342_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|397aa|down_6|NZ_AP020326.1_3928349_3929540_-	PRK08256, PRK08256, lipid-transfer protein; Provisional	NA|294aa|down_7|NZ_AP020326.1_3929630_3930512_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|226aa|down_8|NZ_AP020326.1_3930508_3931186_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|322aa|down_9|NZ_AP020326.1_3931182_3932148_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	5	3982202-3982277	5	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	ATCATCTGCGCCGCTCCTCCTCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA,NA|80aa|down_0|NZ_AP020326.1_3983402_3983642_+,NA|59aa|down_4|NZ_AP020326.1_3986450_3986627_+	NA|196aa|up_9|NZ_AP020326.1_3970583_3971171_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|606aa|up_8|NZ_AP020326.1_3971216_3973034_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|285aa|up_7|NZ_AP020326.1_3973192_3974047_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|389aa|up_6|NZ_AP020326.1_3974095_3975262_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|408aa|up_5|NZ_AP020326.1_3975294_3976518_-	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]	NA|408aa|up_4|NZ_AP020326.1_3976537_3977761_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|85aa|up_3|NZ_AP020326.1_3977882_3978137_+	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|168aa|up_2|NZ_AP020326.1_3978996_3979500_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|365aa|up_1|NZ_AP020326.1_3979551_3980646_-	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional	NA|312aa|up_0|NZ_AP020326.1_3980680_3981616_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|80aa|down_0|NZ_AP020326.1_3983402_3983642_+	NA	NA|232aa|down_1|NZ_AP020326.1_3983809_3984505_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|323aa|down_2|NZ_AP020326.1_3984528_3985497_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|226aa|down_3|NZ_AP020326.1_3985459_3986137_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|59aa|down_4|NZ_AP020326.1_3986450_3986627_+	NA	NA|280aa|down_5|NZ_AP020326.1_3986686_3987526_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|138aa|down_6|NZ_AP020326.1_3987616_3988030_-	pfam06150, ChaB, ChaB	NA|141aa|down_7|NZ_AP020326.1_3988148_3988571_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|473aa|down_8|NZ_AP020326.1_3988571_3989990_-	PRK07869, PRK07869, amidase; Provisional	NA|276aa|down_9|NZ_AP020326.1_3990052_3990880_-	PRK09377, tsf, elongation factor Ts; Provisional
GCF_009002535.1_ASM900253v1	NZ_AP020326	Mycobacterium avium subsp. hominissuis strain JP-H-1	6	5190965-5191096	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,DinG,cas4,WYL	Orphan	CGCTCGCCGAGGGGCAGGCGCTCGC	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	NA|100aa|up_8|NZ_AP020326.1_5180023_5180323_-,NA|566aa|down_4|NZ_AP020326.1_5196562_5198260_+,NA|99aa|down_9|NZ_AP020326.1_5202900_5203197_-	NA|486aa|up_9|NZ_AP020326.1_5178486_5179944_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|100aa|up_8|NZ_AP020326.1_5180023_5180323_-	NA	NA|385aa|up_7|NZ_AP020326.1_5180874_5182029_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|123aa|up_6|NZ_AP020326.1_5183199_5183568_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|405aa|up_5|NZ_AP020326.1_5183608_5184823_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|310aa|up_4|NZ_AP020326.1_5185070_5186000_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|549aa|up_3|NZ_AP020326.1_5186039_5187686_-	PRK08322, PRK08322, acetolactate synthase large subunit	NA|473aa|up_2|NZ_AP020326.1_5187766_5189185_+	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|312aa|up_1|NZ_AP020326.1_5189251_5190187_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|228aa|up_0|NZ_AP020326.1_5190183_5190867_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|570aa|down_0|NZ_AP020326.1_5191103_5192813_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|327aa|down_1|NZ_AP020326.1_5192938_5193919_+	pfam02126, PTE, Phosphotriesterase family	NA|409aa|down_2|NZ_AP020326.1_5193949_5195176_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|419aa|down_3|NZ_AP020326.1_5195297_5196554_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|566aa|down_4|NZ_AP020326.1_5196562_5198260_+	NA	NA|395aa|down_5|NZ_AP020326.1_5198215_5199400_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_6|NZ_AP020326.1_5199490_5200258_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|494aa|down_7|NZ_AP020326.1_5200303_5201785_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|196aa|down_8|NZ_AP020326.1_5202311_5202899_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|99aa|down_9|NZ_AP020326.1_5202900_5203197_-	NA
