assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009002435.1_ASM900243v1	NZ_AP019687	Klebsiella quasipneumoniae strain SNI47	1	578627-579029	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Orphan	TTTTGCTATCTGAATCCGTGACGCAGATGAATGACTGTCCACGACGCTATACCCAAAG	58	3	3	578685-578741|578800-578856|578915-578971	NZ_AP019687.1_579143-579199|NZ_AP019687.1_579143-579199|NZ_AP019687.1_579142-579198	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA|56aa|down_2|NZ_AP019687.1_581247_581415_-	NA|216aa|up_9|NZ_AP019687.1_567501_568149_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_8|NZ_AP019687.1_568224_569265_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|up_7|NZ_AP019687.1_569385_569961_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|up_6|NZ_AP019687.1_569970_570561_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|129aa|up_5|NZ_AP019687.1_570586_570973_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|703aa|up_4|NZ_AP019687.1_570930_573039_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|288aa|up_3|NZ_AP019687.1_573102_573966_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|524aa|up_2|NZ_AP019687.1_574141_575713_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_1|NZ_AP019687.1_576277_577048_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_0|NZ_AP019687.1_577074_577965_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|288aa|down_0|NZ_AP019687.1_579753_580617_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|136aa|down_1|NZ_AP019687.1_580766_581174_+	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]	NA|56aa|down_2|NZ_AP019687.1_581247_581415_-	NA	NA|234aa|down_3|NZ_AP019687.1_581439_582141_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_4|NZ_AP019687.1_582245_583142_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|123aa|down_5|NZ_AP019687.1_583181_583550_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_6|NZ_AP019687.1_583676_584663_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_7|NZ_AP019687.1_584742_585135_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|99aa|down_8|NZ_AP019687.1_585495_585792_-	pfam13997, YqjK, YqjK-like protein	NA|133aa|down_9|NZ_AP019687.1_585788_586187_-	COG5393, COG5393, Predicted membrane protein [Function unknown]
GCF_009002435.1_ASM900243v1	NZ_AP019687	Klebsiella quasipneumoniae strain SNI47	2	2349468-2350106	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Type I-E	GTCTTCCCCACGTGCGTGGGGGTGTTTC,GTCTTCCCCACGTGCGTGGGGGTGTTTC,GTCTTCCCCACGTGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	9,10,10	10	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA	NA|241aa|up_9|NZ_AP019687.1_2336018_2336741_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|196aa|up_8|NZ_AP019687.1_2337040_2337628_+	COG4332, COG4332, Uncharacterized protein conserved in bacteria [Function unknown]	NA|131aa|up_7|NZ_AP019687.1_2337757_2338150_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|145aa|up_6|NZ_AP019687.1_2338191_2338626_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_5|NZ_AP019687.1_2338741_2339941_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|717aa|up_4|NZ_AP019687.1_2341442_2343593_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_AP019687.1_2343839_2344919_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_AP019687.1_2345222_2346311_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_AP019687.1_2346385_2348155_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_AP019687.1_2348147_2349218_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_AP019687.1_2350473_2353089_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_AP019687.1_2353092_2354616_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_AP019687.1_2354627_2355194_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_AP019687.1_2355186_2355834_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_AP019687.1_2355863_2356898_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_AP019687.1_2356910_2357627_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_AP019687.1_2357626_2358502_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_AP019687.1_2358479_2358767_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|124aa|down_8|NZ_AP019687.1_2359279_2359651_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_9|NZ_AP019687.1_2360152_2360908_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3
GCF_009002435.1_ASM900243v1	NZ_AP019687	Klebsiella quasipneumoniae strain SNI47	3	2358815-2359270	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	6,7,7	7	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA	NA|590aa|up_9|NZ_AP019687.1_2346385_2348155_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_AP019687.1_2348147_2349218_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_AP019687.1_2350473_2353089_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_AP019687.1_2353092_2354616_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_AP019687.1_2354627_2355194_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_AP019687.1_2355186_2355834_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_AP019687.1_2355863_2356898_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_AP019687.1_2356910_2357627_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_AP019687.1_2357626_2358502_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_AP019687.1_2358479_2358767_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|124aa|down_0|NZ_AP019687.1_2359279_2359651_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_1|NZ_AP019687.1_2360152_2360908_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_2|NZ_AP019687.1_2360910_2362695_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_3|NZ_AP019687.1_2362705_2364046_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_4|NZ_AP019687.1_2364129_2364753_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_5|NZ_AP019687.1_2364749_2365409_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_6|NZ_AP019687.1_2365458_2366196_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_7|NZ_AP019687.1_2366192_2366423_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|153aa|down_8|NZ_AP019687.1_2366406_2366865_+	PRK13165, PRK13165, cytochrome c maturation protein CcmE	NA|651aa|down_9|NZ_AP019687.1_2366861_2368814_+	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
GCF_009002435.1_ASM900243v1	NZ_AP019687	Klebsiella quasipneumoniae strain SNI47	4	4399643-4399762	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	Unclear	TGGCGGCTGCGCCTGACCCGGCCTACAAAAC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT,WYL	NA,NA	NA|428aa|up_9|NZ_AP019687.1_4389184_4390468_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_AP019687.1_4390603_4392004_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_AP019687.1_4392049_4392742_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_AP019687.1_4392839_4393238_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_AP019687.1_4393295_4394540_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_AP019687.1_4394645_4395104_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_AP019687.1_4395361_4396819_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|149aa|up_2|NZ_AP019687.1_4396864_4397311_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_AP019687.1_4397313_4398369_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_AP019687.1_4398528_4399389_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_AP019687.1_4399814_4400030_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_AP019687.1_4400032_4401256_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_AP019687.1_4401268_4401865_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_AP019687.1_4401871_4402510_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_AP019687.1_4402502_4403297_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_AP019687.1_4403289_4404528_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_AP019687.1_4404531_4405875_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_AP019687.1_4406286_4407027_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_AP019687.1_4406997_4407765_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_AP019687.1_4407839_4408421_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
