The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044497	Haemophilus influenzae strain PittGG chromosome, complete genome	1887343	660604	712681	1887343	plate,integrase,head,tRNA,terminase	Mannheimia_phage(12.2%)	72	655383:655399	692177:692193
655383:655399	attL	AAGTGCGGTAAAAATTT	NA	NA	NA	NA
WP_005641600.1|660604_661630_-|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
WP_005651299.1|661527_661842_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005651298.1|661893_662238_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_005651295.1|662230_662554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041174856.1|662543_663032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651292.1|663148_663565_-	hypothetical protein	NA	E5EYK4	Acinetobacter_phage	35.9	1.1e-08
WP_038440643.1|663568_664222_-	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	35.1	1.9e-05
WP_012054998.1|664272_665547_-	DNA cytosine methyltransferase	NA	A0A2I7QRH3	Vibrio_phage	46.9	7.7e-96
WP_012054997.1|665554_665914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668254.1|665910_666156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012054995.1|667169_667949_-	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	60.4	4.5e-38
WP_012054994.1|668011_668446_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	36.2	5.7e-19
WP_005662051.1|668445_669096_-	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	70.2	5.8e-84
WP_012054993.1|669070_669991_-	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	71.5	4.8e-116
WP_012054992.1|670003_670297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651091.1|670293_670638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651093.1|670651_671389_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
WP_012054990.1|671479_672511_-	endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
WP_005688811.1|672500_672752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651098.1|672871_673183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651099.1|673570_673756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651101.1|673906_675055_-	hypothetical protein	NA	A0A1S5SAB0	Streptococcus_phage	36.2	1.7e-30
WP_032826898.1|675065_675926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651107.1|675988_676354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651110.1|676355_676943_-	recombinase NinG	NA	A0A2I7RAC0	Vibrio_phage	49.0	1.3e-37
WP_005651114.1|677035_677452_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	1.1e-62
WP_005633909.1|677488_677713_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_005651116.1|677709_678345_-	replication P	NA	A0A1P8DTF3	Proteus_phage	33.8	2.1e-17
WP_012054988.1|678329_679112_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	45.1	5.6e-41
WP_005651121.1|679113_679347_-	hypothetical protein	NA	A0A0M3LR73	Mannheimia_phage	58.9	1.9e-13
WP_005651123.1|679392_679845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005643392.1|679888_680095_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005651126.1|680220_680991_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	26.3	1.1e-15
WP_005651127.1|681184_681511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005692586.1|681497_681902_+	M15 family metallopeptidase	NA	W0LI70	Edwardsiella_phage	66.4	2.2e-44
WP_005651133.1|681898_682288_+	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_005651135.1|682262_682493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012054986.1|682504_683860_+	hypothetical protein	NA	A0A0E3U266	Fusobacterium_phage	44.8	1.8e-98
WP_005651141.1|683856_684078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651145.1|684135_684504_+	LuxR family transcriptional regulator	NA	A0A0R6PHW5	Moraxella_phage	39.3	3.4e-12
WP_005651147.1|684484_685834_+|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	58.7	5.5e-145
WP_005651149.1|685835_687152_+	DUF1073 domain-containing protein	NA	A0A2K9V3H1	Faecalibacterium_phage	32.2	1.4e-47
WP_005651151.1|687132_688350_+|head	phage head protein	head	I3PGT9	Xanthomonas_phage	36.0	1.4e-33
WP_005651153.1|688475_689549_+	DUF2213 domain-containing protein	NA	E5AGA6	Erwinia_phage	40.2	1.6e-54
WP_005643361.1|689561_689981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041174811.1|689988_690990_+	DUF2184 domain-containing protein	NA	A0A0N9SG07	Pseudomonas_phage	36.2	8.5e-50
WP_005692571.1|690992_691181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005692569.1|691184_691535_+	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_012054983.1|691527_691986_+	hypothetical protein	NA	A0A2I7R754	Vibrio_phage	35.2	3.7e-16
WP_005692565.1|691985_692345_+	hypothetical protein	NA	NA	NA	NA	NA
692177:692193	attR	AAGTGCGGTAAAAATTT	NA	NA	NA	NA
WP_005692563.1|692346_692856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012054982.1|692842_693916_+	DUF3383 family protein	NA	A0A0N9SJA3	Pseudomonas_phage	35.7	1.4e-63
WP_005643344.1|693961_694387_+	DUF3277 family protein	NA	A0A2K9V3K6	Faecalibacterium_phage	45.9	4.0e-25
WP_012054980.1|694386_694869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005651171.1|695053_697384_+	tape measure protein	NA	K7RVL7	Vibrio_phage	28.6	2.8e-35
WP_005651173.1|697474_698056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005643334.1|698052_698367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005643331.1|698363_699320_+	hypothetical protein	NA	A0A0N9RT60	Pseudomonas_phage	34.1	6.3e-34
WP_005651176.1|699322_699994_+|plate	phage baseplate protein	plate	A0A0M5M1K7	Salmonella_phage	33.0	1.3e-17
WP_005651178.1|699990_700356_+	hypothetical protein	NA	K4RI30	Pseudomonas_phage	31.8	5.3e-10
WP_005651180.1|700348_701785_+	hypothetical protein	NA	E5AGC3	Erwinia_phage	29.0	1.2e-44
WP_012054979.1|701793_702408_+	DUF2612 domain-containing protein	NA	A0A0N9SSD8	Pseudomonas_phage	37.4	1.0e-21
WP_012054978.1|704494_705094_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	92.5	8.0e-96
WP_005693048.1|705090_705549_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	57.1	4.4e-46
WP_005691741.1|706197_706923_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_005662648.1|706975_707428_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010868979.1|707494_708709_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005691745.1|708732_709149_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	2.0e-53
WP_005649164.1|709205_709529_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_005691748.1|709541_710066_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005669116.1|710116_710803_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_005691750.1|710821_712681_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.9	1.2e-110
>prophage 2
NZ_CP044497	Haemophilus influenzae strain PittGG chromosome, complete genome	1887343	1422181	1439595	1887343	terminase,holin	Haemophilus_phage(57.89%)	22	NA	NA
WP_048955182.1|1422181_1422880_-	helix-turn-helix transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	86.1	5.8e-114
WP_005650512.1|1422990_1423179_+	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
WP_074040106.1|1423227_1423668_+	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	31.0	1.3e-13
WP_011962093.1|1423714_1424383_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	52.6	1.2e-55
WP_011962092.1|1424379_1425126_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	65.1	3.0e-68
WP_074040118.1|1425140_1425773_+	replication P	NA	D0UIL4	Aggregatibacter_phage	47.1	5.8e-36
WP_005650520.1|1425759_1425984_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_074040113.1|1426020_1426440_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	76.1	3.3e-56
WP_011962088.1|1426528_1427095_+	hypothetical protein	NA	Q7Y5V6	Haemophilus_phage	69.1	1.5e-67
WP_011962086.1|1427785_1428154_+	antitermination protein	NA	Q7Y5V5	Haemophilus_phage	62.6	2.3e-37
WP_011962085.1|1428331_1428871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011962084.1|1428980_1429439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650535.1|1430829_1431186_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_041174794.1|1431154_1431757_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	54.9	1.9e-57
WP_011962080.1|1431984_1432266_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
WP_011272618.1|1432267_1432546_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
WP_005693952.1|1432590_1433106_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	40.9	5.6e-21
WP_112083118.1|1434437_1435700_+	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.3	1.4e-206
WP_041174838.1|1435798_1436980_+	hypothetical protein	NA	Q7Y5U5	Haemophilus_phage	74.9	5.1e-86
WP_011962077.1|1437120_1438221_+	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	85.4	2.2e-139
WP_011962076.1|1438233_1438689_+	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	78.8	1.1e-60
WP_112083119.1|1438698_1439595_+	hypothetical protein	NA	Q7Y5S2	Haemophilus_phage	67.7	5.6e-69
>prophage 3
NZ_CP044497	Haemophilus influenzae strain PittGG chromosome, complete genome	1887343	1522312	1535220	1887343		Mycoplasma_phage(22.22%)	11	NA	NA
WP_005694012.1|1522312_1523461_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
WP_015702226.1|1523444_1524305_+	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.2	7.6e-15
WP_005650699.1|1524304_1525075_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
WP_005659551.1|1525147_1526287_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_080491702.1|1526367_1526952_-	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	41.8	9.8e-06
WP_074039479.1|1526924_1527449_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	39.8	5.9e-18
WP_005655119.1|1528044_1528284_-	DNA cytosine methyltransferase	NA	A0A2H4PAK4	Aphanizomenon_phage	44.1	1.0e-06
WP_011962021.1|1528476_1529907_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A0K0KVL9	Prochlorococcus_phage	40.5	3.1e-21
WP_011962020.1|1530003_1530939_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	NA	A0A1W6JP29	Morganella_phage	40.3	1.2e-53
WP_074039474.1|1531011_1532910_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	36.1	1.2e-97
WP_011962019.1|1532976_1535220_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.2	7.4e-86
>prophage 4
NZ_CP044497	Haemophilus influenzae strain PittGG chromosome, complete genome	1887343	1686657	1695170	1887343		uncultured_Caudovirales_phage(16.67%)	9	NA	NA
WP_074039407.1|1686657_1687341_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
WP_005663812.1|1687333_1687759_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
WP_005686506.1|1687759_1688395_+	7-carboxy-7-deazaguanine synthase	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_012055447.1|1688788_1689022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_112083313.1|1689005_1691189_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	2.3e-116
WP_020910114.1|1691308_1692280_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|1692294_1693182_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|1693191_1694184_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_005663823.1|1694186_1695170_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 5
NZ_CP044497	Haemophilus influenzae strain PittGG chromosome, complete genome	1887343	1826391	1835457	1887343		Escherichia_phage(83.33%)	9	NA	NA
WP_012055373.1|1826391_1828236_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.6	2.1e-22
WP_005651690.1|1828359_1828638_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_074039468.1|1828646_1828964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012055371.1|1828983_1830093_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_074039464.1|1830345_1832766_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.4	1.8e-223
WP_005669796.1|1832775_1833393_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	2.2e-72
WP_012055369.1|1833394_1834234_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.9	8.5e-19
WP_012055368.1|1834345_1834957_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	2.3e-21
WP_012055367.1|1834956_1835457_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	31.8	3.2e-13
