assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807895.1_ASM880789v1	NZ_CP032669	Listeria monocytogenes strain 52869 chromosome, complete genome	1	540004-540588	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA,NA|158aa|down_0|NZ_CP032669.1_541481_541955_+,NA|162aa|down_1|NZ_CP032669.1_541975_542461_+,NA|89aa|down_3|NZ_CP032669.1_542869_543136_+,NA|55aa|down_4|NZ_CP032669.1_543374_543539_+,NA|79aa|down_5|NZ_CP032669.1_543600_543837_-,NA|108aa|down_7|NZ_CP032669.1_545850_546174_+,NA|104aa|down_8|NZ_CP032669.1_546148_546460_+	NA|222aa|up_9|NZ_CP032669.1_525109_525775_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NZ_CP032669.1_525795_526551_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NZ_CP032669.1_526668_528828_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NZ_CP032669.1_528824_529973_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NZ_CP032669.1_529977_530925_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NZ_CP032669.1_531080_532676_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NZ_CP032669.1_532809_534093_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NZ_CP032669.1_534093_535194_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NZ_CP032669.1_535186_536737_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NZ_CP032669.1_537556_539095_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP032669.1_541481_541955_+	NA	NA|162aa|down_1|NZ_CP032669.1_541975_542461_+	NA	NA|102aa|down_2|NZ_CP032669.1_542488_542794_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP032669.1_542869_543136_+	NA	NA|55aa|down_4|NZ_CP032669.1_543374_543539_+	NA	NA|79aa|down_5|NZ_CP032669.1_543600_543837_-	NA	NA|577aa|down_6|NZ_CP032669.1_544075_545806_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|108aa|down_7|NZ_CP032669.1_545850_546174_+	NA	NA|104aa|down_8|NZ_CP032669.1_546148_546460_+	NA	NA|326aa|down_9|NZ_CP032669.1_546423_547401_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_008807895.1_ASM880789v1	NZ_CP032669	Listeria monocytogenes strain 52869 chromosome, complete genome	2	585407-585824	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTNTGAAATGTAAAT	29,29,29	1	1	585694-585729	NZ_CP032669.1_132213-132248	I-A:I-A:I-A	5,5,6	6	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA|133aa|up_5|NZ_CP032669.1_580396_580795_+,NA|193aa|down_0|NZ_CP032669.1_586149_586728_+	NA|217aa|up_9|NZ_CP032669.1_576459_577110_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP032669.1_577218_579279_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP032669.1_579282_579885_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP032669.1_579912_580380_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP032669.1_580396_580795_+	NA	NA|217aa|up_4|NZ_CP032669.1_580805_581456_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP032669.1_581452_582499_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP032669.1_582514_582808_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP032669.1_582822_584094_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP032669.1_584233_585169_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP032669.1_586149_586728_+	NA	NA|227aa|down_1|NZ_CP032669.1_586835_587516_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP032669.1_587540_587900_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP032669.1_587906_588365_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP032669.1_588746_590582_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP032669.1_590682_591114_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP032669.1_591160_592591_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP032669.1_592711_593527_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP032669.1_593879_594602_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP032669.1_594617_596306_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_008807895.1_ASM880789v1	NZ_CP032669	Listeria monocytogenes strain 52869 chromosome, complete genome	3	602185-605921	2,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	1	1	603256-603293	NZ_CP032669.1_2395481-2395444	I-A:I-A:I-A	57,57,53	57	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh	NA,NA|148aa|down_5|NZ_CP032669.1_611469_611913_+,NA|492aa|down_9|NZ_CP032669.1_616222_617698_+	NA|477aa|up_9|NZ_CP032669.1_591160_592591_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NZ_CP032669.1_592711_593527_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NZ_CP032669.1_593879_594602_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NZ_CP032669.1_594617_596306_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NZ_CP032669.1_596295_597165_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NZ_CP032669.1_597142_597925_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NZ_CP032669.1_597992_600200_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NZ_CP032669.1_600213_600702_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|333aa|up_1|NZ_CP032669.1_600705_601704_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NZ_CP032669.1_601708_601987_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP032669.1_605993_606362_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP032669.1_606508_607924_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP032669.1_608055_609060_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP032669.1_609091_610408_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP032669.1_610610_611363_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP032669.1_611469_611913_+	NA	NA|554aa|down_6|NZ_CP032669.1_611958_613620_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP032669.1_613875_615207_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP032669.1_615252_615993_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP032669.1_616222_617698_+	NA
