assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807075.1_ASM880707v1	NZ_CP035632	Synechococcus sp. RSCCF101 chromosome, complete genome	1	1378679-1389628	1	CRT	no		cas3,csa3,DEDDh,DinG,Cas9_archaeal	Orphan	CTGTCNGANTCNGAGTCG	18	12	12	1386287-1386310|1386479-1386496|1386821-1386844|1386863-1386880|1386953-1386970|1387043-1387060|1387379-1387396|1387469-1387486|1387613-1387630|1387703-1387720|1388009-1388026|1388285-1388320	NZ_CP035632.1_1389635-1389658|NZ_CP035632.1_1389641-1389658|NZ_CP035632.1_1389635-1389658|NZ_CP035632.1_1389641-1389658|NZ_CP035632.1_1389623-1389640|NZ_CP035632.1_1389623-1389640|NZ_CP035632.1_1389641-1389658|NZ_CP035632.1_1389659-1389676|NZ_CP035632.1_1389659-1389676|NZ_CP035632.1_1389641-1389658|NZ_CP035632.1_1389641-1389658|NZ_CP035632.1_1389611-1389646	NA	112	112	Orphan	cas3,csa3,DEDDh,DinG,Cas9_archaeal	NA|118aa|up_4|NZ_CP035632.1_1370916_1371270_-,NA|334aa|up_2|NZ_CP035632.1_1372007_1373009_-,NA|100aa|down_3|NZ_CP035632.1_1394935_1395235_+,NA|80aa|down_4|NZ_CP035632.1_1395402_1395642_+,NA|136aa|down_7|NZ_CP035632.1_1400667_1401075_+,NA|81aa|down_8|NZ_CP035632.1_1401078_1401321_+	NA|321aa|up_9|NZ_CP035632.1_1365899_1366862_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|211aa|up_8|NZ_CP035632.1_1366975_1367608_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|83aa|up_7|NZ_CP035632.1_1367830_1368079_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|417aa|up_6|NZ_CP035632.1_1368104_1369355_-	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|510aa|up_5|NZ_CP035632.1_1369351_1370881_-	PRK00784, PRK00784, cobyric acid synthase	NA|118aa|up_4|NZ_CP035632.1_1370916_1371270_-	NA	NA|218aa|up_3|NZ_CP035632.1_1371350_1372004_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|334aa|up_2|NZ_CP035632.1_1372007_1373009_-	NA	NA|532aa|up_1|NZ_CP035632.1_1373045_1374641_-	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|1049aa|up_0|NZ_CP035632.1_1374637_1377784_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|473aa|down_0|NZ_CP035632.1_1390128_1391547_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|588aa|down_1|NZ_CP035632.1_1391595_1393359_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|444aa|down_2|NZ_CP035632.1_1393386_1394718_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|100aa|down_3|NZ_CP035632.1_1394935_1395235_+	NA	NA|80aa|down_4|NZ_CP035632.1_1395402_1395642_+	NA	NA|953aa|down_5|NZ_CP035632.1_1396011_1398870_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|396aa|down_6|NZ_CP035632.1_1399257_1400445_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|136aa|down_7|NZ_CP035632.1_1400667_1401075_+	NA	NA|81aa|down_8|NZ_CP035632.1_1401078_1401321_+	NA	NA|111aa|down_9|NZ_CP035632.1_1401317_1401650_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional
GCF_008807075.1_ASM880707v1	NZ_CP035632	Synechococcus sp. RSCCF101 chromosome, complete genome	2	2120945-2121047	1	CRISPRCasFinder	no	Cas9_archaeal	cas3,csa3,DEDDh,DinG,Cas9_archaeal	Type II-A, or Type II-C?, Type II-B	CACCTGGCCGCTGCCGCCGCAGGTG	25	0	0	NA	NA	NA	1	1	TypeII-A,TypeII-B,orTypeII-C?	cas3,csa3,DEDDh,DinG,Cas9_archaeal	NA,NA	NA|157aa|up_9|NZ_CP035632.1_2111969_2112440_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|187aa|up_8|NZ_CP035632.1_2112489_2113050_-	PRK00529, PRK00529, elongation factor P; Validated	NA|366aa|up_7|NZ_CP035632.1_2113114_2114212_+	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40	NA|344aa|up_6|NZ_CP035632.1_2114204_2115236_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|341aa|up_5|NZ_CP035632.1_2115281_2116304_-	PRK07403, PRK07403, type I glyceraldehyde-3-phosphate dehydrogenase	NA|464aa|up_4|NZ_CP035632.1_2116528_2117920_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|307aa|up_3|NZ_CP035632.1_2117916_2118837_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|112aa|up_2|NZ_CP035632.1_2118907_2119243_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|326aa|up_1|NZ_CP035632.1_2119223_2120201_-	PRK12289, PRK12289, small ribosomal subunit biogenesis GTPase RsgA	NA|78aa|up_0|NZ_CP035632.1_2120157_2120391_-	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|245aa|down_0|NZ_CP035632.1_2121601_2122336_-	PRK14143, PRK14143, heat shock protein GrpE; Provisional	NA|358aa|down_1|NZ_CP035632.1_2124355_2125429_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|422aa|down_2|NZ_CP035632.1_2125452_2126718_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|419aa|down_3|NZ_CP035632.1_2126719_2127976_-	TIGR00275, TIGR00275, flavoprotein, HI0933 family	NA|347aa|down_4|NZ_CP035632.1_2128020_2129061_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|478aa|down_5|NZ_CP035632.1_2129078_2130512_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|466aa|down_6|NZ_CP035632.1_2130560_2131958_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|552aa|down_7|NZ_CP035632.1_2132033_2133689_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|205aa|down_8|NZ_CP035632.1_2133695_2134310_-	PRK09634, nusB, transcription antitermination protein NusB; Provisional	NA|253aa|down_9|NZ_CP035632.1_2134322_2135081_-	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]
GCF_008807075.1_ASM880707v1	NZ_CP035632	Synechococcus sp. RSCCF101 chromosome, complete genome	3	2356814-2357002	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,Cas9_archaeal	Orphan	TCGATGGCGATGGTGCCGCCG	21	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,Cas9_archaeal	NA|193aa|up_8|NZ_CP035632.1_2345002_2345581_+,NA|466aa|up_4|NZ_CP035632.1_2348179_2349577_+,NA|178aa|up_0|NZ_CP035632.1_2354709_2355243_-,NA	NA|178aa|up_9|NZ_CP035632.1_2344281_2344815_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|193aa|up_8|NZ_CP035632.1_2345002_2345581_+	NA	NA|238aa|up_7|NZ_CP035632.1_2345592_2346306_-	COG1592, COG1592, Rubrerythrin [Energy production and conversion]	NA|322aa|up_6|NZ_CP035632.1_2346491_2347457_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|222aa|up_5|NZ_CP035632.1_2347507_2348173_+	TIGR03943, TIGR03943, TIGR03943 family protein	NA|466aa|up_4|NZ_CP035632.1_2348179_2349577_+	NA	NA|356aa|up_3|NZ_CP035632.1_2349560_2350628_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|936aa|up_2|NZ_CP035632.1_2350766_2353574_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|396aa|up_1|NZ_CP035632.1_2353506_2354694_-	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|178aa|up_0|NZ_CP035632.1_2354709_2355243_-	NA	NA|3090aa|down_0|NZ_CP035632.1_2368133_2377403_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|4448aa|down_1|NZ_CP035632.1_2377516_2390860_-	PRK15319, PRK15319, fibronectin-binding autotransporter adhesin ShdA	NA|611aa|down_2|NZ_CP035632.1_2390961_2392794_-	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|597aa|down_3|NZ_CP035632.1_2392793_2394584_-	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|440aa|down_4|NZ_CP035632.1_2394652_2395972_+	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|161aa|down_5|NZ_CP035632.1_2396014_2396497_-	pfam08670, MEKHLA, MEKHLA domain	NA|301aa|down_6|NZ_CP035632.1_2396493_2397396_-	COG4279, COG4279, Uncharacterized conserved protein [Function unknown]	NA|1061aa|down_7|NZ_CP035632.1_2397436_2400619_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|902aa|down_8|NZ_CP035632.1_2400729_2403435_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|159aa|down_9|NZ_CP035632.1_2403990_2404467_+	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor
GCF_008807075.1_ASM880707v1	NZ_CP035632	Synechococcus sp. RSCCF101 chromosome, complete genome	4	2664182-2664279	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,Cas9_archaeal	Orphan	CACATCCACCACGCCCCAGCCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,Cas9_archaeal	NA|134aa|up_5|NZ_CP035632.1_2657520_2657922_-,NA|66aa|down_1|NZ_CP035632.1_2666342_2666540_+	NA|365aa|up_9|NZ_CP035632.1_2653879_2654974_-	pfam16258, DUF4912, Domain of unknown function (DUF4912)	NA|253aa|up_8|NZ_CP035632.1_2655146_2655905_-	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide	NA|207aa|up_7|NZ_CP035632.1_2656004_2656625_-	pfam09367, CpeS, CpeS-like protein	NA|291aa|up_6|NZ_CP035632.1_2656676_2657549_+	pfam00892, EamA, EamA-like transporter family	NA|134aa|up_5|NZ_CP035632.1_2657520_2657922_-	NA	NA|221aa|up_4|NZ_CP035632.1_2657908_2658571_-	TIGR02702, transcriptional_regulator, iron-sulfur cluster biosynthesis transcriptional regulator SufR	NA|482aa|up_3|NZ_CP035632.1_2658756_2660202_+	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|265aa|up_2|NZ_CP035632.1_2660285_2661080_+	CHL00131, ycf16, sulfate ABC transporter protein; Validated	NA|417aa|up_1|NZ_CP035632.1_2661076_2662327_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|431aa|up_0|NZ_CP035632.1_2662354_2663647_+	PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase	NA|202aa|down_0|NZ_CP035632.1_2665733_2666339_+	PRK00150, def, peptide deformylase; Reviewed	NA|66aa|down_1|NZ_CP035632.1_2666342_2666540_+	NA	NA|195aa|down_2|NZ_CP035632.1_2666597_2667182_+	pfam12565, DUF3747, Protein of unknown function (DUF3747)	NA|57aa|down_3|NZ_CP035632.1_2667226_2667397_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|532aa|down_4|NZ_CP035632.1_2667667_2669263_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|115aa|down_5|NZ_CP035632.1_2669338_2669683_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|661aa|down_6|NZ_CP035632.1_2669714_2671697_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|62aa|down_7|NZ_CP035632.1_2671706_2671892_+	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional	NA|169aa|down_8|NZ_CP035632.1_2671944_2672451_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|167aa|down_9|NZ_CP035632.1_2672447_2672948_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
