assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	1	407546-407944	1	CRT	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CCGCCGGCNCCGCCGGCNCCG	21	1	1	407774-407800	NZ_CP044345.1_776324-776350	NA	7	7	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|222aa|up_2|NZ_CP044345.1_403231_403897_+,NA	NA|410aa|up_9|NZ_CP044345.1_395624_396854_+	pfam00823, PPE, PPE family	NA|469aa|up_8|NZ_CP044345.1_396985_398392_+	pfam00823, PPE, PPE family	NA|119aa|up_7|NZ_CP044345.1_398636_398993_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|NZ_CP044345.1_399146_399851_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|NZ_CP044345.1_399860_401063_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|NZ_CP044345.1_401384_401816_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|NZ_CP044345.1_402224_403127_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|NZ_CP044345.1_403231_403897_+	NA	NA|235aa|up_1|NZ_CP044345.1_403959_404664_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|NZ_CP044345.1_405298_406762_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|NZ_CP044345.1_408503_410423_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|NZ_CP044345.1_410493_412137_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|NZ_CP044345.1_412151_414578_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|NZ_CP044345.1_414774_415404_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|NZ_CP044345.1_415396_416320_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_5|NZ_CP044345.1_416348_416714_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|NZ_CP044345.1_416730_417609_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|NZ_CP044345.1_417646_418051_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|NZ_CP044345.1_418290_418779_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|NZ_CP044345.1_418775_419519_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	2	433875-434129	2	CRT	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	433956-433973|433956-433973|434046-434063	NZ_CP044345.1_3169459-3169442|NZ_CP044345.1_3377146-3377129|NZ_CP044345.1_1791925-1791908	NA	5	5	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|88aa|up_0|NZ_CP044345.1_433233_433497_-,NA	NA|248aa|up_9|NZ_CP044345.1_418775_419519_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP044345.1_419637_420132_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|942aa|up_7|NZ_CP044345.1_421461_424287_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP044345.1_424513_425374_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP044345.1_425414_426281_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP044345.1_426285_428172_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP044345.1_428187_430221_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP044345.1_430340_432566_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP044345.1_432841_433237_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP044345.1_433233_433497_-	NA	NA|346aa|down_0|NZ_CP044345.1_435267_436305_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_1|NZ_CP044345.1_437847_439287_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_2|NZ_CP044345.1_439319_440771_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_3|NZ_CP044345.1_440800_441751_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NZ_CP044345.1_441765_442182_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NZ_CP044345.1_442459_442882_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_6|NZ_CP044345.1_442930_443233_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NZ_CP044345.1_443229_443544_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NZ_CP044345.1_443543_445277_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NZ_CP044345.1_445276_445912_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	3	516042-516261	1	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|136aa|up_3|NZ_CP044345.1_505577_505985_-,NA|127aa|down_5|NZ_CP044345.1_523777_524158_-	NA|741aa|up_9|NZ_CP044345.1_499545_501768_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP044345.1_501805_502249_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP044345.1_502362_502956_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP044345.1_503038_503644_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP044345.1_503743_504748_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP044345.1_504847_505600_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP044345.1_505577_505985_-	NA	NA|368aa|up_2|NZ_CP044345.1_506119_507223_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP044345.1_507222_508419_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|421aa|up_0|NZ_CP044345.1_512487_513749_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP044345.1_518288_518753_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP044345.1_518850_519714_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP044345.1_519751_521023_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP044345.1_521294_522410_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP044345.1_522400_523741_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP044345.1_523777_524158_-	NA	NA|621aa|down_6|NZ_CP044345.1_524314_526177_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP044345.1_526184_526664_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP044345.1_526900_527674_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP044345.1_527677_528445_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	4	1458883-1460239	1,2,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|64aa|up_8|NZ_CP044345.1_1452162_1452354_-,NA|135aa|up_7|NZ_CP044345.1_1452564_1452969_+,NA|64aa|up_6|NZ_CP044345.1_1452965_1453157_+,NA|86aa|up_4|NZ_CP044345.1_1454743_1455001_+,NA|104aa|up_3|NZ_CP044345.1_1455105_1455417_+,NA|203aa|up_2|NZ_CP044345.1_1455836_1456445_+,NA	NA|92aa|up_9|NZ_CP044345.1_1451858_1452134_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|64aa|up_8|NZ_CP044345.1_1452162_1452354_-	NA	NA|135aa|up_7|NZ_CP044345.1_1452564_1452969_+	NA	NA|64aa|up_6|NZ_CP044345.1_1452965_1453157_+	NA	NA|385aa|up_5|NZ_CP044345.1_1453355_1454510_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP044345.1_1454743_1455001_+	NA	NA|104aa|up_3|NZ_CP044345.1_1455105_1455417_+	NA	NA|203aa|up_2|NZ_CP044345.1_1455836_1456445_+	NA	NA|470aa|up_1|NZ_CP044345.1_1456515_1457925_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP044345.1_1457921_1458734_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP044345.1_1460265_1461527_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP044345.1_1463333_1463675_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP044345.1_1463675_1464692_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	NA|421aa|down_3|NZ_CP044345.1_1465468_1466730_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm5gr7|376aa|down_4|NZ_CP044345.1_1467306_1468434_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP044345.1_1468430_1469339_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP044345.1_1469319_1470030_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP044345.1_1470039_1470414_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas6|241aa|down_8|NZ_CP044345.1_1472845_1473568_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP044345.1_1473967_1474513_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	5	1461562-1463285	3,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|64aa|up_9|NZ_CP044345.1_1452162_1452354_-,NA|135aa|up_8|NZ_CP044345.1_1452564_1452969_+,NA|64aa|up_7|NZ_CP044345.1_1452965_1453157_+,NA|86aa|up_5|NZ_CP044345.1_1454743_1455001_+,NA|104aa|up_4|NZ_CP044345.1_1455105_1455417_+,NA|203aa|up_3|NZ_CP044345.1_1455836_1456445_+,NA	NA|64aa|up_9|NZ_CP044345.1_1452162_1452354_-	NA	NA|135aa|up_8|NZ_CP044345.1_1452564_1452969_+	NA	NA|64aa|up_7|NZ_CP044345.1_1452965_1453157_+	NA	NA|385aa|up_6|NZ_CP044345.1_1453355_1454510_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP044345.1_1454743_1455001_+	NA	NA|104aa|up_4|NZ_CP044345.1_1455105_1455417_+	NA	NA|203aa|up_3|NZ_CP044345.1_1455836_1456445_+	NA	NA|470aa|up_2|NZ_CP044345.1_1456515_1457925_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP044345.1_1457921_1458734_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP044345.1_1460265_1461527_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP044345.1_1463333_1463675_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP044345.1_1463675_1464692_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	NA|421aa|down_2|NZ_CP044345.1_1465468_1466730_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm5gr7|376aa|down_3|NZ_CP044345.1_1467306_1468434_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP044345.1_1468430_1469339_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP044345.1_1469319_1470030_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP044345.1_1470039_1470414_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas6|241aa|down_7|NZ_CP044345.1_1472845_1473568_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP044345.1_1473967_1474513_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP044345.1_1474784_1475669_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	6	2089396-2090075	5	CRT	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA,NA|96aa|down_3|NZ_CP044345.1_2104108_2104396_-,NA|88aa|down_7|NZ_CP044345.1_2117516_2117780_-	NA|282aa|up_9|NZ_CP044345.1_2066977_2067823_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP044345.1_2068297_2068738_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP044345.1_2068771_2069641_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP044345.1_2069661_2070672_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_5|NZ_CP044345.1_2070944_2071589_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP044345.1_2071655_2072885_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP044345.1_2073167_2074517_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP044345.1_2074528_2075668_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP044345.1_2075664_2076396_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|339aa|up_0|NZ_CP044345.1_2085796_2086813_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP044345.1_2091985_2092243_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NZ_CP044345.1_2102590_2103037_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_2|NZ_CP044345.1_2103073_2103814_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NZ_CP044345.1_2104108_2104396_-	NA	NA|265aa|down_4|NZ_CP044345.1_2116126_2116921_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_5|NZ_CP044345.1_2117002_2117374_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_6|NZ_CP044345.1_2117271_2117490_-	pfam01565, FAD_binding_4, FAD binding domain	NA|88aa|down_7|NZ_CP044345.1_2117516_2117780_-	NA	NA|130aa|down_8|NZ_CP044345.1_2117891_2118281_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_9|NZ_CP044345.1_2118294_2118588_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	7	2299311-2300877	6	CRT	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CANCGGCGGCANCGGCGGCANCGGCGGNNNCGGCGGC	37	1	5	2300608-2300633|2300608-2300633|2300608-2300633|2300608-2300633|2300608-2300633	NZ_CP044345.1_2291415-2291440|NZ_CP044345.1_2291760-2291785|NZ_CP044345.1_2292105-2292130|NZ_CP044345.1_2292450-2292475|NZ_CP044345.1_2292795-2292820	NA	18	18	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA,NA|280aa|down_2|NZ_CP044345.1_2304191_2305031_+	NA|255aa|up_9|NZ_CP044345.1_2270894_2271659_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP044345.1_2271884_2272838_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP044345.1_2272862_2273054_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP044345.1_2273268_2274471_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_CP044345.1_2274495_2275617_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_CP044345.1_2275687_2277196_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1385aa|up_3|NZ_CP044345.1_2277366_2281521_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP044345.1_2287033_2288581_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP044345.1_2288577_2289414_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP044345.1_2295898_2296555_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP044345.1_2301584_2303231_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP044345.1_2303304_2304096_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP044345.1_2304191_2305031_+	NA	NA|399aa|down_3|NZ_CP044345.1_2305085_2306282_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP044345.1_2306310_2307021_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP044345.1_2307085_2308129_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP044345.1_2308281_2309193_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP044345.1_2309208_2310273_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP044345.1_2310289_2311474_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|175aa|down_9|NZ_CP044345.1_2312562_2313087_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	8	2461544-2461632	4	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|257aa|up_6|NZ_CP044345.1_2452130_2452901_-,NA|233aa|up_0|NZ_CP044345.1_2460648_2461347_-,NA|126aa|down_6|NZ_CP044345.1_2466867_2467245_+	NA|267aa|up_9|NZ_CP044345.1_2447002_2447803_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|up_8|NZ_CP044345.1_2447799_2448963_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|288aa|up_7|NZ_CP044345.1_2450512_2451376_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP044345.1_2452130_2452901_-	NA	NA|549aa|up_5|NZ_CP044345.1_2452897_2454544_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP044345.1_2454540_2455404_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP044345.1_2455396_2456323_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP044345.1_2456324_2457950_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP044345.1_2458657_2460613_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP044345.1_2460648_2461347_-	NA	NA|173aa|down_0|NZ_CP044345.1_2461692_2462211_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP044345.1_2462211_2463195_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP044345.1_2463187_2464381_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP044345.1_2464386_2465208_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP044345.1_2465339_2466023_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP044345.1_2466022_2466760_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP044345.1_2466867_2467245_+	NA	NA|225aa|down_7|NZ_CP044345.1_2467343_2468018_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP044345.1_2468123_2468918_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP044345.1_2468924_2469380_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	9	3100313-3100424	3	PILER-CR	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	5	3100383-3100399|3100383-3100399|3100383-3100399|3100383-3100399|3100383-3100399	NZ_CP044345.1_1155932-1155948|NZ_CP044345.1_2387729-2387745|NZ_CP044345.1_3961355-3961371|NZ_CP044345.1_3611051-3611035|NZ_CP044345.1_3984833-3984817	NA	2	2	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|61aa|up_0|NZ_CP044345.1_3098606_3098789_-,NA	NA|394aa|up_9|NZ_CP044345.1_3088784_3089966_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|543aa|up_8|NZ_CP044345.1_3090067_3091696_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP044345.1_3091712_3093908_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP044345.1_3094021_3095155_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP044345.1_3095151_3095772_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP044345.1_3095868_3096450_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP044345.1_3096379_3097105_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP044345.1_3097194_3098115_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP044345.1_3098154_3098583_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP044345.1_3098606_3098789_-	NA	NA|900aa|down_0|NZ_CP044345.1_3101992_3104692_-	pfam00934, PE, PE family	NA|838aa|down_1|NZ_CP044345.1_3104941_3107455_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_CP044345.1_3107745_3109356_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_CP044345.1_3109379_3110288_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_CP044345.1_3110511_3112407_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_CP044345.1_3112403_3114020_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_CP044345.1_3114016_3118009_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_CP044345.1_3118005_3118314_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_CP044345.1_3118316_3119858_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_CP044345.1_3119906_3120200_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	10	3134845-3135543	5	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	3135133-3135174|3135208-3135240	NZ_CP044345.1_3143164-3143205|NZ_CP044345.1_3141979-3142011	NA	10	10	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|101aa|up_4|NZ_CP044345.1_3131857_3132160_+,NA|161aa|down_1|NZ_CP044345.1_3144953_3145436_-,NA|410aa|down_5|NZ_CP044345.1_3147552_3148782_+	NA|262aa|up_9|NZ_CP044345.1_3126552_3127338_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP044345.1_3127326_3128130_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP044345.1_3128139_3129537_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP044345.1_3129715_3131491_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP044345.1_3131633_3131861_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP044345.1_3131857_3132160_+	NA	NA|74aa|up_3|NZ_CP044345.1_3132207_3132429_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP044345.1_3132425_3132851_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP044345.1_3132986_3133619_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP044345.1_3133615_3134524_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP044345.1_3144294_3144966_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP044345.1_3144953_3145436_-	NA	NA|239aa|down_2|NZ_CP044345.1_3145493_3146210_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP044345.1_3146311_3146968_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP044345.1_3147037_3147529_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP044345.1_3147552_3148782_+	NA	NA|621aa|down_6|NZ_CP044345.1_3148936_3150799_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP044345.1_3150870_3151257_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_CP044345.1_3151259_3151895_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP044345.1_3151982_3152867_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	11	3461815-3461891	6	CRISPRCasFinder	no	c2c9_V-U4	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA,NA	NA|72aa|up_9|NZ_CP044345.1_3447499_3447715_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP044345.1_3447711_3448119_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP044345.1_3448178_3448865_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP044345.1_3449018_3451652_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP044345.1_3451674_3454062_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP044345.1_3454199_3454922_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP044345.1_3454918_3455716_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP044345.1_3455717_3456605_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP044345.1_3456610_3457825_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP044345.1_3458848_3460294_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP044345.1_3463026_3464577_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP044345.1_3464628_3465021_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP044345.1_3465017_3465275_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP044345.1_3465457_3466693_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP044345.1_3466943_3467357_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP044345.1_3467353_3467590_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP044345.1_3467693_3468200_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP044345.1_3468313_3468784_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP044345.1_3468827_3469589_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP044345.1_3469645_3469957_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	12	3697019-3697964	7	CRT	no	csa3	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	3697800-3697835|3697800-3697835|3697800-3697835	NZ_CP044345.1_3985114-3985149|NZ_CP044345.1_776035-776000|NZ_CP044345.1_3444918-3444883	NA	19	19	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA,NA|184aa|down_2|NZ_CP044345.1_3701974_3702526_-,NA|81aa|down_8|NZ_CP044345.1_3707989_3708232_+	NA|685aa|up_9|NZ_CP044345.1_3684657_3686712_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP044345.1_3686877_3688047_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP044345.1_3688134_3689151_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP044345.1_3689312_3689954_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP044345.1_3690034_3691090_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP044345.1_3691141_3691534_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP044345.1_3691591_3692014_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP044345.1_3691975_3692266_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP044345.1_3692370_3693276_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP044345.1_3693294_3694110_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP044345.1_3698233_3700882_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP044345.1_3701349_3701994_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP044345.1_3701974_3702526_-	NA	NA|218aa|down_3|NZ_CP044345.1_3702675_3703329_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP044345.1_3703399_3704428_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP044345.1_3705116_3705887_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP044345.1_3705973_3706786_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP044345.1_3706853_3707714_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP044345.1_3707989_3708232_+	NA	NA|431aa|down_9|NZ_CP044345.1_3708508_3709801_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	13	4343442-4344514	7	CRISPRCasFinder	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	4343642-4343663	NZ_CP044345.1_3983365-3983344	NA	15	15	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|191aa|up_7|NZ_CP044345.1_4334950_4335523_+,NA	NA|103aa|up_9|NZ_CP044345.1_4332720_4333029_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP044345.1_4333025_4334645_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_CP044345.1_4334950_4335523_+	NA	NA|209aa|up_6|NZ_CP044345.1_4335657_4336284_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP044345.1_4336349_4336682_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP044345.1_4336697_4337954_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP044345.1_4338081_4339293_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP044345.1_4339365_4340844_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP044345.1_4340840_4342226_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP044345.1_4342303_4343338_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP044345.1_4345368_4345770_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP044345.1_4345766_4346024_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP044345.1_4346106_4347066_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP044345.1_4347090_4348053_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP044345.1_4348186_4348789_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP044345.1_4348869_4350837_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP044345.1_4350854_4351679_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP044345.1_4351847_4352330_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP044345.1_4352401_4353226_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP044345.1_4353422_4354361_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_008761675.1_ASM876167v1	NZ_CP044345	Mycobacterium tuberculosis strain L chromosome, complete genome	14	4408208-4408337	4	PILER-CR	no		csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	Orphan	CCGCCGTTGCCGCCGCTGGT	20	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas4,DEDDh,c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas6,cas3,RT,DinG	NA|38aa|up_7|NZ_CP044345.1_4394400_4394514_-,NA|137aa|up_6|NZ_CP044345.1_4394563_4394974_-,NA|288aa|down_1|NZ_CP044345.1_4412155_4413019_+,NA|189aa|down_3|NZ_CP044345.1_4415885_4416452_-	NA|767aa|up_9|NZ_CP044345.1_4391067_4393368_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|up_8|NZ_CP044345.1_4393483_4393969_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_7|NZ_CP044345.1_4394400_4394514_-	NA	NA|137aa|up_6|NZ_CP044345.1_4394563_4394974_-	NA	NA|248aa|up_5|NZ_CP044345.1_4394990_4395734_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_4|NZ_CP044345.1_4395730_4396642_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_3|NZ_CP044345.1_4396694_4398239_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_2|NZ_CP044345.1_4398235_4399357_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_1|NZ_CP044345.1_4399373_4401476_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|up_0|NZ_CP044345.1_4406519_4407446_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|329aa|down_0|NZ_CP044345.1_4411149_4412136_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_1|NZ_CP044345.1_4412155_4413019_+	NA	NA|311aa|down_2|NZ_CP044345.1_4412968_4413901_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|189aa|down_3|NZ_CP044345.1_4415885_4416452_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
