assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	1	46739-46825	1	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	TCTTTTTGTTGGGGCCCCACCCCAACTTGC	30	1	3	46769-46795|46769-46795|46769-46795	NZ_CP041722.1_628847-628873|NZ_CP041722.1_3891-3917|NZ_CP041722.1_3948-3974	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA|130aa|up_2|NZ_CP041722.1_44286_44676_+,NA	NA|218aa|up_9|NZ_CP041722.1_38169_38823_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|up_8|NZ_CP041722.1_38898_39909_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|72aa|up_7|NZ_CP041722.1_40463_40679_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|203aa|up_6|NZ_CP041722.1_40916_41525_+	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|351aa|up_5|NZ_CP041722.1_41649_42702_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|316aa|up_4|NZ_CP041722.1_42747_43695_-	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|156aa|up_3|NZ_CP041722.1_43813_44281_+	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|130aa|up_2|NZ_CP041722.1_44286_44676_+	NA	NA|303aa|up_1|NZ_CP041722.1_44708_45617_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|236aa|up_0|NZ_CP041722.1_45825_46533_+	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|655aa|down_0|NZ_CP041722.1_46869_48834_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|216aa|down_1|NZ_CP041722.1_48846_49494_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|184aa|down_2|NZ_CP041722.1_49626_50178_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|402aa|down_3|NZ_CP041722.1_50619_51825_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|458aa|down_4|NZ_CP041722.1_51926_53300_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|154aa|down_5|NZ_CP041722.1_53397_53859_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|318aa|down_6|NZ_CP041722.1_54034_54988_+	cd06259, YdcF-like, YdcF-like	NA|223aa|down_7|NZ_CP041722.1_55078_55747_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|354aa|down_8|NZ_CP041722.1_55743_56805_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|225aa|down_9|NZ_CP041722.1_56932_57607_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2	187625-187705	2	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	CCACCCCAGCTTGCGTTGTCCGT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA|315aa|up_9|NZ_CP041722.1_174572_175517_-,NA|122aa|down_7|NZ_CP041722.1_193167_193533_-	NA|315aa|up_9|NZ_CP041722.1_174572_175517_-	NA	NA|609aa|up_8|NZ_CP041722.1_175905_177732_-	pfam13520, AA_permease_2, Amino acid permease	NA|504aa|up_7|NZ_CP041722.1_178013_179525_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|274aa|up_6|NZ_CP041722.1_179636_180458_+	PRK01622, PRK01622, membrane protein insertase YidC	NA|284aa|up_5|NZ_CP041722.1_180521_181373_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|89aa|up_4|NZ_CP041722.1_181576_181843_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|311aa|up_3|NZ_CP041722.1_182024_182957_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|465aa|up_2|NZ_CP041722.1_183139_184534_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|585aa|up_1|NZ_CP041722.1_184841_186596_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|254aa|up_0|NZ_CP041722.1_186596_187358_+	PRK14084, PRK14084, DNA-binding response regulator	NA|154aa|down_0|NZ_CP041722.1_187868_188330_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_1|NZ_CP041722.1_188329_189031_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|214aa|down_2|NZ_CP041722.1_189302_189944_-	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|104aa|down_3|NZ_CP041722.1_190077_190389_-	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|down_4|NZ_CP041722.1_190385_191042_-	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|209aa|down_5|NZ_CP041722.1_191091_191718_-	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|486aa|down_6|NZ_CP041722.1_191720_193178_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|122aa|down_7|NZ_CP041722.1_193167_193533_-	NA	NA|91aa|down_8|NZ_CP041722.1_193548_193821_-	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family	NA|227aa|down_9|NZ_CP041722.1_194130_194811_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	3	219932-220012	3	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	TTTGTTGGGGCCCACCCCAACTTGC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA|508aa|up_5|NZ_CP041722.1_212617_214141_-,NA|64aa|down_8|NZ_CP041722.1_230729_230921_-	NA|260aa|up_9|NZ_CP041722.1_207351_208131_-	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|255aa|up_8|NZ_CP041722.1_208153_208918_-	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|526aa|up_7|NZ_CP041722.1_209233_210811_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|513aa|up_6|NZ_CP041722.1_211062_212601_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|508aa|up_5|NZ_CP041722.1_212617_214141_-	NA	NA|318aa|up_4|NZ_CP041722.1_214387_215341_+	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|258aa|up_3|NZ_CP041722.1_215466_216240_+	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|269aa|up_2|NZ_CP041722.1_216241_217048_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|277aa|up_1|NZ_CP041722.1_217044_217875_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|427aa|up_0|NZ_CP041722.1_218404_219685_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|152aa|down_0|NZ_CP041722.1_220055_220511_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|359aa|down_1|NZ_CP041722.1_220676_221753_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|516aa|down_2|NZ_CP041722.1_221987_223535_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|513aa|down_3|NZ_CP041722.1_223844_225383_+	TIGR03706, exo_poly_only, exopolyphosphatase	NA|722aa|down_4|NZ_CP041722.1_225475_227641_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|412aa|down_5|NZ_CP041722.1_228023_229259_-	PRK08596, PRK08596, acetylornithine deacetylase; Validated	NA|232aa|down_6|NZ_CP041722.1_229458_230154_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|89aa|down_7|NZ_CP041722.1_230308_230575_+	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|64aa|down_8|NZ_CP041722.1_230729_230921_-	NA	NA|452aa|down_9|NZ_CP041722.1_231104_232460_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	4	404007-404090	4	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	TTCGCTAAGCAAAGCAAGTTGGGGTT	26	1	6	404033-404064|404033-404064|404033-404064|404033-404064|404033-404064|404033-404064	NZ_CP041722.1_99429-99460|NZ_CP041722.1_332218-332187|NZ_CP041722.1_553943-553912|NZ_CP041722.1_554000-553969|NZ_CP041722.1_959264-959233|NZ_CP041722.1_1807450-1807419	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA,NA	NA|272aa|up_9|NZ_CP041722.1_389335_390151_-	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator	NA|875aa|up_8|NZ_CP041722.1_390155_392780_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|531aa|up_7|NZ_CP041722.1_393028_394621_-	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|150aa|up_6|NZ_CP041722.1_395257_395707_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|90aa|up_5|NZ_CP041722.1_395696_395966_-	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|393aa|up_4|NZ_CP041722.1_396104_397283_-	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|569aa|up_3|NZ_CP041722.1_397530_399237_-	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|497aa|up_2|NZ_CP041722.1_399328_400819_-	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like	NA|187aa|up_1|NZ_CP041722.1_401186_401747_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|542aa|up_0|NZ_CP041722.1_401799_403425_-	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|431aa|down_0|NZ_CP041722.1_404347_405640_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|179aa|down_1|NZ_CP041722.1_405996_406533_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|616aa|down_2|NZ_CP041722.1_406534_408382_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|257aa|down_3|NZ_CP041722.1_408580_409351_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|407aa|down_4|NZ_CP041722.1_409739_410960_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|200aa|down_5|NZ_CP041722.1_411264_411864_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|393aa|down_6|NZ_CP041722.1_411880_413059_-	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|300aa|down_7|NZ_CP041722.1_413081_413981_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|204aa|down_8|NZ_CP041722.1_413998_414610_-	PRK06718, PRK06718, NAD(P)-binding protein	NA|260aa|down_9|NZ_CP041722.1_414630_415410_-	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	5	743877-744699	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Type III-A,Type III-B,Type III-C,Type III-D	GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT,GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT,GTTCTCGTCCCCTTTTATACGGGGTATTCTCTGATT	36,36,36	1	2	744271-744305|744271-744305	NZ_CP041722.1_1127858-1127892|NZ_CP041722.1_2568853-2568819	NA:NA:NA	11,11,10	11	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA|96aa|up_9|NZ_CP041722.1_728244_728532_-,NA|109aa|up_8|NZ_CP041722.1_728534_728861_-,NA|118aa|up_0|NZ_CP041722.1_743329_743683_-,NA	NA|96aa|up_9|NZ_CP041722.1_728244_728532_-	NA	NA|109aa|up_8|NZ_CP041722.1_728534_728861_-	NA	NA|442aa|up_7|NZ_CP041722.1_728860_730186_-	cd00519, Lipase_3, Lipase (class 3)	NA|262aa|up_6|NZ_CP041722.1_730182_730968_-	pfam04507, DUF576, Csa1 family	NA|262aa|up_5|NZ_CP041722.1_731229_732015_-	pfam04507, DUF576, Csa1 family	NA|256aa|up_4|NZ_CP041722.1_732084_732852_-	pfam04507, DUF576, Csa1 family	NA|262aa|up_3|NZ_CP041722.1_732942_733728_-	pfam04507, DUF576, Csa1 family	NA|2394aa|up_2|NZ_CP041722.1_735172_742354_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|209aa|up_1|NZ_CP041722.1_742350_742977_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|118aa|up_0|NZ_CP041722.1_743329_743683_-	NA	cas6|251aa|down_0|NZ_CP041722.1_744885_745638_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|113aa|down_1|NZ_CP041722.1_745634_745973_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm6|330aa|down_2|NZ_CP041722.1_745951_746941_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|337aa|down_3|NZ_CP041722.1_746933_747944_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|down_4|NZ_CP041722.1_747947_748856_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|down_5|NZ_CP041722.1_748866_749511_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|down_6|NZ_CP041722.1_749512_749938_-	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	cas10|758aa|down_7|NZ_CP041722.1_749939_752213_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|down_8|NZ_CP041722.1_752228_752534_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|down_9|NZ_CP041722.1_752533_753439_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	6	1531214-1531304	6	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	AAACTCGTCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA,NA	NA|410aa|up_9|NZ_CP041722.1_1517440_1518670_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|NZ_CP041722.1_1518758_1519616_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|NZ_CP041722.1_1519617_1520562_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|NZ_CP041722.1_1520724_1521693_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|NZ_CP041722.1_1521710_1523471_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|NZ_CP041722.1_1524024_1525383_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|NZ_CP041722.1_1525729_1526848_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|NZ_CP041722.1_1526895_1528164_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|NZ_CP041722.1_1528367_1529078_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|NZ_CP041722.1_1529077_1530787_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|NZ_CP041722.1_1531351_1533985_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|NZ_CP041722.1_1534001_1534874_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|NZ_CP041722.1_1534889_1535495_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|NZ_CP041722.1_1535641_1536643_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|NZ_CP041722.1_1536817_1537825_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|NZ_CP041722.1_1538141_1538612_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|NZ_CP041722.1_1538612_1539989_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|NZ_CP041722.1_1539988_1540909_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|NZ_CP041722.1_1541268_1543206_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|NZ_CP041722.1_1543669_1545163_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	7	2095506-2095592	7	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	TGTTGGGGCCCCACCCCAACTCGCGTTGTT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA,NA	NA|272aa|up_9|NZ_CP041722.1_2085726_2086542_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|204aa|up_8|NZ_CP041722.1_2086724_2087336_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|up_7|NZ_CP041722.1_2087597_2088950_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|152aa|up_6|NZ_CP041722.1_2089212_2089668_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|349aa|up_5|NZ_CP041722.1_2089799_2090846_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|358aa|up_4|NZ_CP041722.1_2090918_2091992_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|271aa|up_3|NZ_CP041722.1_2091988_2092801_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|266aa|up_2|NZ_CP041722.1_2092806_2093604_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|365aa|up_1|NZ_CP041722.1_2093596_2094691_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|180aa|up_0|NZ_CP041722.1_2094705_2095245_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|down_0|NZ_CP041722.1_2095630_2095918_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|469aa|down_1|NZ_CP041722.1_2096121_2097528_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|435aa|down_2|NZ_CP041722.1_2097531_2098836_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_3|NZ_CP041722.1_2099048_2100026_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|down_4|NZ_CP041722.1_2100029_2101142_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|210aa|down_5|NZ_CP041722.1_2101308_2101938_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|184aa|down_6|NZ_CP041722.1_2102075_2102627_+	PRK00150, def, peptide deformylase; Reviewed	NA|73aa|down_7|NZ_CP041722.1_2103061_2103280_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|560aa|down_8|NZ_CP041722.1_2103279_2104959_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|220aa|down_9|NZ_CP041722.1_2105553_2106213_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	8	2188296-2188390	8	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	35	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA|116aa|up_3|NZ_CP041722.1_2185659_2186007_-,NA	NA|257aa|up_9|NZ_CP041722.1_2179008_2179779_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|615aa|up_8|NZ_CP041722.1_2180066_2181911_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|462aa|up_7|NZ_CP041722.1_2181921_2183307_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|285aa|up_6|NZ_CP041722.1_2183332_2184187_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|270aa|up_5|NZ_CP041722.1_2184183_2184993_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NZ_CP041722.1_2185007_2185643_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|116aa|up_3|NZ_CP041722.1_2185659_2186007_-	NA	NA|191aa|up_2|NZ_CP041722.1_2186200_2186773_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_1|NZ_CP041722.1_2186872_2187238_+	COG2346, COG2346, Truncated hemoglobins [General function prediction only]	NA|266aa|up_0|NZ_CP041722.1_2187260_2188058_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|603aa|down_0|NZ_CP041722.1_2188704_2190513_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|324aa|down_1|NZ_CP041722.1_2190564_2191536_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|244aa|down_2|NZ_CP041722.1_2191636_2192368_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_3|NZ_CP041722.1_2192588_2192984_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|330aa|down_4|NZ_CP041722.1_2193271_2194261_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|252aa|down_5|NZ_CP041722.1_2194447_2195203_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|551aa|down_6|NZ_CP041722.1_2195411_2197064_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP041722.1_2197089_2198031_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|361aa|down_8|NZ_CP041722.1_2198020_2199103_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_9|NZ_CP041722.1_2199117_2200182_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_008728815.1_ASM872881v1	NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	9	2432189-2432268	9	CRISPRCasFinder	no		WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	Orphan	CCAAGCAAAGCAAGTTGGGGTGG	23	1	5	2432212-2432245|2432212-2432245|2432212-2432245|2432212-2432245|2432212-2432245	NZ_CP041722.1_765060-765093|NZ_CP041722.1_1487271-1487304|NZ_CP041722.1_1307546-1307579|NZ_CP041722.1_1326033-1326000|NZ_CP041722.1_10846-10813	NA	1	1	Orphan	WYL,csa3,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,cas3,DEDDh,DinG	NA,NA	NA|261aa|up_9|NZ_CP041722.1_2420021_2420804_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|320aa|up_8|NZ_CP041722.1_2420800_2421760_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|326aa|up_7|NZ_CP041722.1_2421740_2422718_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|up_6|NZ_CP041722.1_2423086_2424055_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_5|NZ_CP041722.1_2424294_2426400_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_4|NZ_CP041722.1_2426362_2426761_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|290aa|up_3|NZ_CP041722.1_2427634_2428504_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_2|NZ_CP041722.1_2428516_2429017_+	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|502aa|up_1|NZ_CP041722.1_2429301_2430807_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|305aa|up_0|NZ_CP041722.1_2431134_2432049_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|177aa|down_0|NZ_CP041722.1_2432422_2432953_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|352aa|down_1|NZ_CP041722.1_2433190_2434246_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NZ_CP041722.1_2434368_2435883_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|505aa|down_3|NZ_CP041722.1_2436163_2437678_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|323aa|down_4|NZ_CP041722.1_2437674_2438643_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_5|NZ_CP041722.1_2438859_2440641_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_6|NZ_CP041722.1_2440654_2442538_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|272aa|down_7|NZ_CP041722.1_2442649_2443465_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|646aa|down_8|NZ_CP041722.1_2443632_2445570_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_9|NZ_CP041722.1_2446120_2447125_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
