The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	477568	515284	2694981	integrase,protease,transposase	Clostridium_phage(33.33%)	34	469799:469813	489342:489356
469799:469813	attL	AAGAAAAAACAAATC	NA	NA	NA	NA
WP_070817097.1|477568_477934_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_070817096.1|477942_480015_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_070817095.1|480025_481129_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	30.6	2.4e-13
WP_002478983.1|482160_482649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014533204.1|482711_485549_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_002478985.1|485857_487864_+	amidase domain-containing protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.2	2.8e-12
WP_002478986.1|488369_490349_-	hypothetical protein	NA	NA	NA	NA	NA
489342:489356	attR	GATTTGTTTTTTCTT	NA	NA	NA	NA
WP_080513636.1|490636_490816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478987.1|490994_492047_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002478988.1|492059_492419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070817093.1|492605_493448_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002478990.1|494619_494991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002460658.1|495635_495839_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002478991.1|495835_496552_+	DUF3169 family protein	NA	NA	NA	NA	NA
WP_002460661.1|496610_497453_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002478992.1|497452_498088_+	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_002478993.1|498177_499062_-	ribokinase	NA	NA	NA	NA	NA
WP_002478994.1|499184_499589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478995.1|499602_500169_-	VOC family protein	NA	NA	NA	NA	NA
WP_002478996.1|500318_501296_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_002478997.1|501526_502489_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_002460674.1|502550_503912_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_002460675.1|503926_504211_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002478998.1|504210_504657_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002478999.1|504672_506604_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002479000.1|506815_507796_+	choloylglycine hydrolase family protein	NA	M1H8K9	Paramecium_bursaria_Chlorella_virus	27.4	2.2e-26
WP_002479001.1|507913_509287_-	MFS transporter	NA	NA	NA	NA	NA
WP_002460682.1|509571_510288_+	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002479002.1|510268_511195_+	DUF979 domain-containing protein	NA	NA	NA	NA	NA
WP_002479003.1|511239_511878_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_002479004.1|511969_512617_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002479005.1|512905_513706_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002460688.1|513864_514446_-	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_002460689.1|514465_515284_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	1097753	1131006	2694981	portal,tail,capsid,head,terminase	Staphylococcus_phage(58.54%)	48	NA	NA
WP_041612472.1|1097753_1098956_-	dihydrolipoamide dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.7	2.0e-90
WP_085317587.1|1098972_1100355_-	recombinase family protein	NA	A8R7E9	Staphylococcus_phage	65.4	6.0e-171
WP_070866295.1|1100420_1100621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070866271.1|1100778_1101300_-	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	69.9	6.6e-70
WP_070866272.1|1101318_1101780_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A141VTQ3	Staphylococcus_phage	85.0	5.2e-71
WP_070817183.1|1101791_1102115_-	helix-turn-helix transcriptional regulator	NA	A0A141VTQ4	Staphylococcus_phage	95.3	2.5e-51
WP_070817182.1|1102279_1102528_+	helix-turn-helix transcriptional regulator	NA	A0A141VTQ5	Staphylococcus_phage	91.2	2.7e-34
WP_000033736.1|1102702_1102912_-	hypothetical protein	NA	Q4ZDA8	Staphylococcus_virus	100.0	1.6e-35
WP_070866296.1|1102958_1103831_+	hypothetical protein	NA	Q4ZDB2	Staphylococcus_virus	87.1	3.7e-126
WP_070866273.1|1103823_1104591_+	hypothetical protein	NA	Q4ZDB0	Staphylococcus_virus	86.7	5.2e-124
WP_070866274.1|1105012_1105210_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	80.0	1.9e-17
WP_070866275.1|1105223_1105535_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.7	3.2e-40
WP_002478859.1|1105482_1105866_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	30.8	7.3e-10
WP_070866276.1|1106093_1106273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478865.1|1106341_1106827_+	siphovirus Gp157 family protein	NA	H9A0R4	Staphylococcus_phage	76.4	1.8e-61
WP_002478866.1|1106827_1107502_+	single-stranded DNA-binding protein	NA	I6T7Q2	Staphylococcus_virus	91.0	7.1e-109
WP_014533250.1|1107498_1107915_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	83.2	6.9e-46
WP_070866279.1|1107929_1108607_+	hypothetical protein	NA	A0A141VTR7	Staphylococcus_phage	82.5	4.2e-109
WP_070866280.1|1108596_1109337_+	helix-turn-helix domain-containing protein	NA	A7TWN2	Staphylococcus_phage	86.2	6.9e-81
WP_070866281.1|1109349_1110135_+	DNA replication protein DnaC	NA	A0A1W6JPS4	Staphylococcus_phage	93.9	4.5e-139
WP_014533255.1|1110285_1110528_+	hypothetical protein	NA	A0A1W6JNF3	Staphylococcus_phage	76.2	3.8e-28
WP_002478873.1|1110536_1110944_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_002478874.1|1110940_1111255_+	hypothetical protein	NA	A0A2H4JG42	uncultured_Caudovirales_phage	80.9	1.6e-15
WP_150891441.1|1111376_1111817_+	DUF3310 domain-containing protein	NA	A0A1W6JQB9	Staphylococcus_phage	49.6	2.0e-27
WP_070817172.1|1111803_1112037_+	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	47.3	1.7e-09
WP_070817171.1|1112044_1112296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070866283.1|1112314_1112830_+	dUTP pyrophosphatase	NA	A0A2H4JCG3	uncultured_Caudovirales_phage	79.1	1.4e-67
WP_150891443.1|1112866_1113016_+	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_150891446.1|1113008_1113191_+	regulator	NA	A0A1W6JNS3	Staphylococcus_phage	76.8	4.1e-19
WP_012990986.1|1113333_1113750_+	hypothetical protein	NA	A0A1W6JP87	Staphylococcus_phage	81.2	3.6e-63
WP_012990985.1|1114052_1114481_+	hypothetical protein	NA	A0A1P8BLJ8	Lactococcus_phage	47.2	8.4e-23
WP_012990984.1|1114467_1115742_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	84.7	4.8e-215
WP_150891448.1|1115753_1117205_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	71.9	2.0e-201
WP_070866285.1|1117191_1118157_+|head	phage head morphogenesis protein	head	A0A1J0MF61	Staphylococcus_phage	42.5	2.4e-65
WP_070557760.1|1118475_1119066_+	DUF4355 domain-containing protein	NA	A0A1J0MFB3	Staphylococcus_phage	57.1	7.1e-20
WP_070647809.1|1119085_1119991_+|capsid	capsid protein	capsid	Q4ZE33	Staphylococcus_virus	78.2	1.6e-132
WP_070481522.1|1120005_1120245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070481521.1|1120254_1120584_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	64.2	1.8e-33
WP_083321418.1|1120607_1120883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070817163.1|1120882_1121224_+	HK97 gp10 family phage protein	NA	A0A1J0MFN9	Staphylococcus_phage	60.2	3.9e-31
WP_070817162.1|1121234_1121621_+	hypothetical protein	NA	B7T0D6	Staphylococcus_virus	39.7	1.4e-21
WP_070817161.1|1121639_1122203_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNI6	Staphylococcus_phage	53.4	8.2e-42
WP_070481516.1|1122277_1122643_+|tail	phage tail protein	tail	A0A1W6JNK2	Staphylococcus_phage	62.0	1.8e-34
WP_070866287.1|1122687_1123053_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	57.6	7.4e-20
WP_070866288.1|1123059_1126716_+	hypothetical protein	NA	S4V989	Staphylococcus_phage	56.3	2.2e-103
WP_070866289.1|1126736_1127690_+|tail	phage tail family protein	tail	A0A2P1JTW0	Anoxybacillus_phage	36.2	1.0e-44
WP_150891450.1|1127706_1128804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150891452.1|1128822_1131006_+	hypothetical protein	NA	Q4ZCD5	Staphylococcus_virus	36.0	1.6e-69
>prophage 3
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	1290636	1304590	2694981	integrase,terminase	Staphylococcus_phage(75.0%)	20	1292586:1292605	1307245:1307264
WP_002461410.1|1290636_1290921_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	45.2	1.2e-12
WP_002477926.1|1290980_1292603_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.2	3.4e-157
1292586:1292605	attL	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
WP_070817131.1|1292671_1293844_-|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.7	7.0e-221
WP_000589126.1|1293844_1294615_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000989513.1|1294784_1295003_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	78.9	3.3e-23
WP_070817130.1|1295006_1295324_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	94.3	1.1e-48
WP_000784891.1|1295320_1295476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|1295460_1295664_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403836.1|1295665_1296049_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	1.1e-63
WP_070817129.1|1296049_1296370_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	94.9	2.9e-36
WP_070817128.1|1296436_1297306_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	97.6	3.3e-167
WP_070817127.1|1297319_1299029_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	94.7	2.6e-309
WP_070817126.1|1299359_1299740_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	98.4	3.4e-68
WP_070817125.1|1299736_1300378_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	88.7	7.0e-106
WP_002445374.1|1300665_1301010_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	86.8	2.7e-48
WP_002445375.1|1300999_1301257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445376.1|1301268_1301790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002445377.1|1301852_1302425_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	72.1	1.4e-73
WP_070817124.1|1302704_1303214_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	3.8e-22
WP_070817123.1|1304035_1304590_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.6	9.7e-72
1307245:1307264	attR	ATGCCAGGTATGATGTAAAA	NA	NA	NA	NA
>prophage 4
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	1425490	1455743	2694981	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
WP_002458784.1|1425490_1426885_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
WP_002477998.1|1426891_1427896_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|1427892_1428150_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002458787.1|1428216_1428690_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
WP_002477999.1|1428670_1429444_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	6.5e-98
WP_002458789.1|1429507_1431100_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	1.1e-274
WP_002458790.1|1431471_1432668_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|1432766_1433675_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002478000.1|1433789_1434623_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.4e-119
WP_002478001.1|1434807_1435161_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|1435157_1435523_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|1435591_1435897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478004.1|1436153_1436867_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|1436997_1437450_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002458798.1|1437430_1437877_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|1437892_1438363_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|1438560_1438785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|1438986_1439841_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_012990810.1|1440224_1441724_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002478007.1|1442035_1443142_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
WP_002458804.1|1443149_1443782_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|1443794_1444976_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|1444988_1445447_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_002478009.1|1445524_1446511_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	2.7e-133
WP_002458808.1|1446727_1447561_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002458809.1|1448053_1448455_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|1448505_1449069_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002458811.1|1449065_1450019_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
WP_002478010.1|1450122_1451298_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.8e-176
WP_002478011.1|1451619_1454034_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
WP_002458814.1|1454052_1454364_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002478012.1|1454483_1455743_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	3.7e-42
>prophage 5
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	1572529	1581548	2694981	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002478078.1|1572529_1573534_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002478079.1|1573536_1574562_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002478080.1|1574580_1575720_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
WP_002458927.1|1575738_1575999_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_002478081.1|1576184_1578473_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_002478082.1|1578733_1581010_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.7e-66
WP_002458930.1|1581029_1581548_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 6
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	1707212	1715909	2694981		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_002459061.1|1707212_1707944_+	segregation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_012990840.1|1707936_1708470_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
WP_002478163.1|1708472_1709210_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|1709359_1710085_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002478164.1|1710068_1711817_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|1712540_1713083_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|1713224_1713473_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002459068.1|1713583_1714543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459069.1|1714529_1715909_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 7
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	2120413	2128883	2694981		Synechococcus_phage(33.33%)	9	NA	NA
WP_002478377.1|2120413_2120980_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|2120979_2122011_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_002459448.1|2122003_2123488_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
WP_002478379.1|2123466_2125656_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|2125648_2126320_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|2126321_2126582_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|2126581_2127286_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002478382.1|2127286_2128414_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_150891510.1|2128400_2128883_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.0e-20
>prophage 8
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	2348337	2364337	2694981	integrase,terminase	Staphylococcus_phage(70.59%)	20	2347080:2347137	2361008:2361065
2347080:2347137	attL	CAAAAATAAAAAGCCCACAACCACAGTGGTTGCAGGCTATATAATGGAGACGGCGGGA	NA	NA	NA	NA
WP_053035392.1|2348337_2349546_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	21.5	1.6e-05
WP_037558951.1|2349749_2350232_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	64.2	4.7e-54
WP_037558953.1|2350224_2350578_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_053018629.1|2350580_2351039_-	pathogenicity island protein	NA	A0A1W6JQH7	Staphylococcus_phage	59.2	3.3e-33
WP_049395134.1|2351101_2351809_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	35.2	7.6e-37
WP_049395135.1|2351833_2352187_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	66.4	2.2e-37
WP_053018627.1|2352656_2353241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053018625.1|2353237_2353882_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	69.0	9.9e-84
WP_053018623.1|2353882_2354248_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	31.9	3.1e-10
WP_078103909.1|2354259_2354535_-	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	87.5	1.3e-37
WP_047210628.1|2354521_2355325_-	DNA primase	NA	Q4ZE69	Staphylococcus_phage	95.5	4.2e-148
WP_053018617.1|2355495_2357109_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	76.6	8.4e-241
WP_053018615.1|2357183_2357489_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	71.3	2.0e-34
WP_053018613.1|2357488_2357902_-	hypothetical protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	92.5	1.9e-64
WP_053018610.1|2358050_2358272_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_053018608.1|2358258_2358483_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	55.6	1.3e-14
WP_053018606.1|2358643_2359225_+	helix-turn-helix transcriptional regulator	NA	A0A0E3U244	Fusobacterium_phage	47.9	2.7e-08
WP_053018637.1|2359234_2360341_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	6.3e-78
WP_002479322.1|2361475_2361940_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	94.2	2.9e-77
2361008:2361065	attR	CAAAAATAAAAAGCCCACAACCACAGTGGTTGCAGGCTATATAATGGAGACGGCGGGA	NA	NA	NA	NA
WP_150891522.1|2361961_2364337_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.1	6.6e-93
>prophage 9
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	2416393	2434246	2694981		uncultured_Caudovirales_phage(58.33%)	15	NA	NA
WP_141760421.1|2416393_2417347_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
WP_002492143.1|2417333_2418311_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
WP_002459737.1|2418870_2419905_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002459738.1|2420021_2420804_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.2	1.5e-14
WP_002479353.1|2420800_2421760_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
WP_002459740.1|2421740_2422718_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|2423086_2424055_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|2424294_2426400_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|2426362_2426761_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_002479354.1|2427634_2428504_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|2428516_2429017_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_012990941.1|2429301_2430807_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002479357.1|2431134_2432049_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002479359.1|2432422_2432953_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|2433190_2434246_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 10
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	2448768	2455389	2694981		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|2448768_2449920_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|2449903_2450500_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002459764.1|2450835_2451507_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
WP_002459765.1|2451508_2451928_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|2451927_2452644_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002459767.1|2452742_2453333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459768.1|2453373_2454396_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	3.2e-60
WP_070817153.1|2454552_2455389_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.0	1.1e-61
>prophage 11
NZ_CP041722	Staphylococcus lugdunensis strain SL13 chromosome, complete genome	2694981	2536836	2598452	2694981	holin,integrase,tail,capsid,tRNA,head	Staphylococcus_phage(48.94%)	78	2536450:2536471	2559455:2559476
2536450:2536471	attL	TAAATAATAATAAATAGATAAA	NA	NA	NA	NA
WP_002479410.1|2536836_2537394_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	32.6	1.2e-21
WP_002479411.1|2537532_2537739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459851.1|2537754_2537976_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_002479412.1|2538266_2539196_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002459853.1|2539387_2540245_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002459854.1|2540575_2540944_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002479414.1|2541174_2541957_-	alpha/beta hydrolase	NA	A0A291AV30	Mycobacterium_phage	33.0	5.3e-07
WP_002459856.1|2542123_2542840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459857.1|2543008_2543515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459858.1|2543666_2544461_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002459859.1|2544464_2545166_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_002459860.1|2545217_2546168_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_012990954.1|2546333_2547227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002459862.1|2547452_2547947_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_049823121.1|2548022_2548805_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479417.1|2548857_2549499_-	endonuclease III	NA	NA	NA	NA	NA
WP_012990956.1|2549573_2551241_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002479419.1|2551237_2551654_-	DUF1934 family protein	NA	NA	NA	NA	NA
WP_002479421.1|2552499_2552892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459869.1|2553038_2553443_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002479422.1|2553558_2554569_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	6.8e-31
WP_002479423.1|2555131_2555638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002479424.1|2555736_2557035_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.2	3.3e-22
WP_002459873.1|2557100_2557580_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012990957.1|2557765_2558314_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002459875.1|2558496_2559435_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_002493021.1|2559586_2560012_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
2559455:2559476	attR	TTTATCTATTTATTATTATTTA	NA	NA	NA	NA
WP_083319033.1|2560016_2560166_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_085317547.1|2560773_2562183_-	CHAP domain-containing protein	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	83.3	1.2e-235
WP_002478910.1|2562182_2562455_-|holin	phage holin	holin	A0A2H4JHI3	uncultured_Caudovirales_phage	85.6	2.0e-38
WP_085317549.1|2562511_2565076_-	DUF2479 domain-containing protein	NA	Q4ZC48	Staphylococcus_virus	46.8	4.8e-230
WP_085317551.1|2565230_2565527_-	DUF2951 family protein	NA	A0A1W6JPB3	Staphylococcus_phage	54.6	5.1e-19
WP_150891452.1|2565704_2567888_-	hypothetical protein	NA	Q4ZCD5	Staphylococcus_virus	36.0	1.6e-69
WP_150891450.1|2567906_2569004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070866289.1|2569020_2569974_-|tail	phage tail family protein	tail	A0A2P1JTW0	Anoxybacillus_phage	36.2	1.0e-44
WP_150891528.1|2569994_2571812_-	hypothetical protein	NA	Q938K3	Temperate_phage	35.8	3.2e-10
WP_150891530.1|2574067_2574433_-|tail	phage tail protein	tail	A0A1W6JNK2	Staphylococcus_phage	57.0	5.5e-31
WP_070817161.1|2574507_2575071_-|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNI6	Staphylococcus_phage	53.4	8.2e-42
WP_150891532.1|2575089_2575476_-	hypothetical protein	NA	A0A1J0MFV3	Staphylococcus_phage	28.0	3.5e-12
WP_150891534.1|2575486_2575828_-	hypothetical protein	NA	A0A1J0MFN9	Staphylococcus_phage	58.3	4.8e-29
WP_150891536.1|2575827_2576130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150891538.1|2576126_2576456_-|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	63.3	6.9e-33
WP_150891540.1|2576465_2576705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150891542.1|2576721_2577627_-|capsid	capsid protein	capsid	Q4ZE33	Staphylococcus_virus	72.8	4.1e-120
WP_150891544.1|2577646_2578237_-	DUF4355 domain-containing protein	NA	A0A1J0MFB3	Staphylococcus_phage	54.4	2.5e-17
WP_150891546.1|2578555_2579521_-|head	phage head morphogenesis protein	head	A0A1J0MF61	Staphylococcus_phage	42.5	2.4e-65
WP_012990985.1|2582234_2582663_-	hypothetical protein	NA	A0A1P8BLJ8	Lactococcus_phage	47.2	8.4e-23
WP_012990986.1|2582968_2583385_-	hypothetical protein	NA	A0A1W6JP87	Staphylococcus_phage	81.2	3.6e-63
WP_150891446.1|2583527_2583710_-	regulator	NA	A0A1W6JNS3	Staphylococcus_phage	76.8	4.1e-19
WP_150891443.1|2583702_2583852_-	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_070866283.1|2583888_2584404_-	dUTP pyrophosphatase	NA	A0A2H4JCG3	uncultured_Caudovirales_phage	79.1	1.4e-67
WP_070817171.1|2584422_2584674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070817172.1|2584681_2584915_-	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	47.3	1.7e-09
WP_150891441.1|2584901_2585342_-	DUF3310 domain-containing protein	NA	A0A1W6JQB9	Staphylococcus_phage	49.6	2.0e-27
WP_002478874.1|2585463_2585778_-	hypothetical protein	NA	A0A2H4JG42	uncultured_Caudovirales_phage	80.9	1.6e-15
WP_002478873.1|2585774_2586182_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_014533255.1|2586190_2586433_-	hypothetical protein	NA	A0A1W6JNF3	Staphylococcus_phage	76.2	3.8e-28
WP_070866281.1|2586583_2587369_-	DNA replication protein DnaC	NA	A0A1W6JPS4	Staphylococcus_phage	93.9	4.5e-139
WP_150891548.1|2587381_2588140_-	replication protein	NA	A0A1J0MF60	Staphylococcus_phage	88.0	2.4e-60
WP_150891550.1|2588136_2588352_-	hypothetical protein	NA	A0A2H4J6I4	uncultured_Caudovirales_phage	90.7	1.1e-20
WP_014533250.1|2588366_2588783_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	83.2	6.9e-46
WP_150891552.1|2588779_2589454_-	single-stranded DNA-binding protein	NA	I6T7Q2	Staphylococcus_virus	91.0	5.4e-109
WP_150891554.1|2589446_2589668_-	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	78.1	1.6e-25
WP_150891556.1|2589633_2589912_-	hypothetical protein	NA	A0A1W6JP63	Staphylococcus_phage	61.4	4.9e-24
WP_150891558.1|2589981_2590161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478859.1|2590388_2590772_+	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	30.8	7.3e-10
WP_070866275.1|2590719_2591031_-	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.7	3.2e-40
WP_070866274.1|2591044_2591242_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	80.0	1.9e-17
WP_070866273.1|2591663_2592431_-	hypothetical protein	NA	Q4ZDB0	Staphylococcus_virus	86.7	5.2e-124
WP_070866296.1|2592423_2593296_-	hypothetical protein	NA	Q4ZDB2	Staphylococcus_virus	87.1	3.7e-126
WP_000033736.1|2593342_2593552_+	hypothetical protein	NA	Q4ZDA8	Staphylococcus_virus	100.0	1.6e-35
WP_150891560.1|2593750_2594542_-	phage antirepressor Ant	NA	A0A2H4J5J5	uncultured_Caudovirales_phage	77.6	4.7e-112
WP_009382133.1|2594541_2594736_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	89.1	1.1e-22
WP_150891562.1|2595015_2595354_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	58.2	8.1e-29
WP_150891564.1|2595367_2596039_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	46.6	3.8e-46
WP_150891566.1|2596124_2596646_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	69.4	5.6e-69
WP_070866295.1|2596803_2597004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070866270.1|2597069_2598452_+	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	63.3	3.8e-165
