assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008728735.1_ASM872873v1	NZ_CP041724	Staphylococcus lugdunensis strain SL55 chromosome, complete genome	1	921370-921453	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	TTCCACGAACAACGCAAGTTGGGGTGG	27	1	1	921397-921426	NZ_CP041724.1_1967534-1967563	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA|130aa|down_2|NZ_CP041724.1_923473_923863_-	NA|457aa|up_9|NZ_CP041724.1_909238_910609_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_8|NZ_CP041724.1_910601_911276_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_7|NZ_CP041724.1_911403_912465_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_6|NZ_CP041724.1_912461_913130_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_5|NZ_CP041724.1_913220_914174_-	cd06259, YdcF-like, YdcF-like	NA|458aa|up_4|NZ_CP041724.1_914907_916281_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|NZ_CP041724.1_916382_917588_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|NZ_CP041724.1_918029_918581_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|NZ_CP041724.1_918713_919361_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|NZ_CP041724.1_919373_921338_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|NZ_CP041724.1_921616_922324_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|303aa|down_1|NZ_CP041724.1_922532_923441_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|NZ_CP041724.1_923473_923863_-	NA	NA|156aa|down_3|NZ_CP041724.1_923868_924336_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|NZ_CP041724.1_924454_925402_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|NZ_CP041724.1_925447_926500_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|NZ_CP041724.1_926624_927233_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|72aa|down_7|NZ_CP041724.1_927470_927686_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|NZ_CP041724.1_928240_929251_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|NZ_CP041724.1_929326_929980_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008728735.1_ASM872873v1	NZ_CP041724	Staphylococcus lugdunensis strain SL55 chromosome, complete genome	2	1210125-1210209	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CAACGCAAGTTGGGGTGGGGCCCCAACA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA|60aa|down_4|NZ_CP041724.1_1215689_1215869_+,NA|243aa|down_9|NZ_CP041724.1_1218911_1219640_+	NA|317aa|up_9|NZ_CP041724.1_1199730_1200681_+	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|495aa|up_8|NZ_CP041724.1_1200780_1202265_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|325aa|up_7|NZ_CP041724.1_1202265_1203240_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|239aa|up_6|NZ_CP041724.1_1203331_1204048_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|430aa|up_5|NZ_CP041724.1_1204060_1205350_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|48aa|up_4|NZ_CP041724.1_1205371_1205515_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|216aa|up_3|NZ_CP041724.1_1205517_1206165_-	smart00793, AgrB, Accessory gene regulator B	NA|262aa|up_2|NZ_CP041724.1_1206711_1207497_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|208aa|up_1|NZ_CP041724.1_1207631_1208255_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|503aa|up_0|NZ_CP041724.1_1208448_1209957_+	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)	NA|247aa|down_0|NZ_CP041724.1_1210498_1211239_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP041724.1_1211419_1211704_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP041724.1_1211763_1213386_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|429aa|down_3|NZ_CP041724.1_1213929_1215216_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|60aa|down_4|NZ_CP041724.1_1215689_1215869_+	NA	NA|127aa|down_5|NZ_CP041724.1_1216094_1216475_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|296aa|down_6|NZ_CP041724.1_1216471_1217359_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|222aa|down_7|NZ_CP041724.1_1217355_1218021_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|291aa|down_8|NZ_CP041724.1_1218039_1218912_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|243aa|down_9|NZ_CP041724.1_1218911_1219640_+	NA
GCF_008728735.1_ASM872873v1	NZ_CP041724	Staphylococcus lugdunensis strain SL55 chromosome, complete genome	3	1866457-1866542	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	GAAATTCGACAAACAAAGCAAGTTGGGGT	29	1	1	1866486-1866513	NZ_CP041724.1_1986317-1986290	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|241aa|up_9|NZ_CP041724.1_1854839_1855562_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|293aa|up_8|NZ_CP041724.1_1855698_1856577_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|263aa|up_7|NZ_CP041724.1_1856760_1857549_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|258aa|up_6|NZ_CP041724.1_1857767_1858541_-	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|468aa|up_5|NZ_CP041724.1_1858562_1859966_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_4|NZ_CP041724.1_1860012_1860555_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|298aa|up_3|NZ_CP041724.1_1860555_1861449_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_2|NZ_CP041724.1_1861580_1862888_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|690aa|up_1|NZ_CP041724.1_1862939_1865009_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_0|NZ_CP041724.1_1865180_1866053_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|412aa|down_0|NZ_CP041724.1_1866711_1867947_-	pfam02388, FemAB, FemAB family	NA|383aa|down_1|NZ_CP041724.1_1867960_1869109_-	pfam01476, LysM, LysM domain	NA|303aa|down_2|NZ_CP041724.1_1869304_1870213_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|down_3|NZ_CP041724.1_1870234_1871401_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|down_4|NZ_CP041724.1_1871511_1872279_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|down_5|NZ_CP041724.1_1872262_1873147_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|864aa|down_6|NZ_CP041724.1_1873403_1875995_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|869aa|down_7|NZ_CP041724.1_1875999_1878606_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_8|NZ_CP041724.1_1878807_1879158_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_9|NZ_CP041724.1_1879263_1880001_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed
GCF_008728735.1_ASM872873v1	NZ_CP041724	Staphylococcus lugdunensis strain SL55 chromosome, complete genome	4	2375803-2375891	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	AGCACAAAGAAATGCACCAAGCATTTCTACG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|72aa|up_6|NZ_CP041724.1_2371714_2371930_-,NA|99aa|up_2|NZ_CP041724.1_2374020_2374317_-,NA|151aa|up_1|NZ_CP041724.1_2374442_2374895_-,NA|230aa|up_0|NZ_CP041724.1_2375105_2375795_+,NA	NA|311aa|up_9|NZ_CP041724.1_2368430_2369363_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|147aa|up_8|NZ_CP041724.1_2369587_2370028_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|291aa|up_7|NZ_CP041724.1_2370409_2371282_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|72aa|up_6|NZ_CP041724.1_2371714_2371930_-	NA	NA|149aa|up_5|NZ_CP041724.1_2372304_2372751_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_4|NZ_CP041724.1_2372766_2373333_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|181aa|up_3|NZ_CP041724.1_2373364_2373907_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|99aa|up_2|NZ_CP041724.1_2374020_2374317_-	NA	NA|151aa|up_1|NZ_CP041724.1_2374442_2374895_-	NA	NA|230aa|up_0|NZ_CP041724.1_2375105_2375795_+	NA	NA|162aa|down_0|NZ_CP041724.1_2376244_2376730_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|406aa|down_1|NZ_CP041724.1_2376731_2377949_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|down_2|NZ_CP041724.1_2378034_2378889_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|207aa|down_3|NZ_CP041724.1_2379339_2379960_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|156aa|down_4|NZ_CP041724.1_2380337_2380805_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_5|NZ_CP041724.1_2380804_2381521_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_6|NZ_CP041724.1_2381754_2382114_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|715aa|down_7|NZ_CP041724.1_2382257_2384402_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|218aa|down_8|NZ_CP041724.1_2384710_2385364_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|268aa|down_9|NZ_CP041724.1_2385731_2386535_+	COG3942, COG3942, Surface antigen [General function prediction only]
