assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	1	403961-404051	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	AAACTCGTCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|410aa|up_9|NZ_CP041723.1_390192_391422_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|NZ_CP041723.1_391510_392368_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|NZ_CP041723.1_392369_393314_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|NZ_CP041723.1_393476_394445_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|NZ_CP041723.1_394462_396223_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|NZ_CP041723.1_396776_398135_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|NZ_CP041723.1_398476_399595_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|NZ_CP041723.1_399642_400911_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|NZ_CP041723.1_401114_401825_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|NZ_CP041723.1_401824_403534_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|NZ_CP041723.1_404098_406732_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|NZ_CP041723.1_406748_407621_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|NZ_CP041723.1_407636_408242_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|NZ_CP041723.1_408388_409390_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|NZ_CP041723.1_409564_410572_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|NZ_CP041723.1_410888_411359_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|NZ_CP041723.1_411359_412736_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|NZ_CP041723.1_412735_413656_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|NZ_CP041723.1_414015_415953_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|NZ_CP041723.1_416416_417910_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2	968210-968296	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TGTTGGGGCCCCACCCCAACTCGCGTTGTT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|272aa|up_9|NZ_CP041723.1_958430_959246_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|185aa|up_8|NZ_CP041723.1_959428_959983_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|up_7|NZ_CP041723.1_960301_961654_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|152aa|up_6|NZ_CP041723.1_961916_962372_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|349aa|up_5|NZ_CP041723.1_962503_963550_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|358aa|up_4|NZ_CP041723.1_963622_964696_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|271aa|up_3|NZ_CP041723.1_964692_965505_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|266aa|up_2|NZ_CP041723.1_965510_966308_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|365aa|up_1|NZ_CP041723.1_966300_967395_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|180aa|up_0|NZ_CP041723.1_967409_967949_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|down_0|NZ_CP041723.1_968334_968622_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|469aa|down_1|NZ_CP041723.1_968825_970232_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|435aa|down_2|NZ_CP041723.1_970235_971540_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_3|NZ_CP041723.1_971752_972730_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|down_4|NZ_CP041723.1_972733_973846_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|210aa|down_5|NZ_CP041723.1_974012_974642_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|184aa|down_6|NZ_CP041723.1_974779_975331_+	PRK00150, def, peptide deformylase; Reviewed	NA|73aa|down_7|NZ_CP041723.1_975765_975984_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|560aa|down_8|NZ_CP041723.1_975983_977663_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|220aa|down_9|NZ_CP041723.1_978257_978917_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	3	1061009-1061103	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|116aa|up_3|NZ_CP041723.1_1058372_1058720_-,NA	NA|257aa|up_9|NZ_CP041723.1_1051721_1052492_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|615aa|up_8|NZ_CP041723.1_1052779_1054624_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|462aa|up_7|NZ_CP041723.1_1054634_1056020_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|285aa|up_6|NZ_CP041723.1_1056045_1056900_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|270aa|up_5|NZ_CP041723.1_1056896_1057706_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NZ_CP041723.1_1057720_1058356_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|116aa|up_3|NZ_CP041723.1_1058372_1058720_-	NA	NA|191aa|up_2|NZ_CP041723.1_1058913_1059486_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_1|NZ_CP041723.1_1059585_1059951_+	COG2346, COG2346, Truncated hemoglobins [General function prediction only]	NA|266aa|up_0|NZ_CP041723.1_1059973_1060771_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|603aa|down_0|NZ_CP041723.1_1061417_1063226_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|324aa|down_1|NZ_CP041723.1_1063277_1064249_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|244aa|down_2|NZ_CP041723.1_1064349_1065081_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_3|NZ_CP041723.1_1065301_1065697_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|330aa|down_4|NZ_CP041723.1_1065984_1066974_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|252aa|down_5|NZ_CP041723.1_1067160_1067916_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|551aa|down_6|NZ_CP041723.1_1068124_1069777_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP041723.1_1069802_1070744_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|361aa|down_8|NZ_CP041723.1_1070733_1071816_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_9|NZ_CP041723.1_1071830_1072895_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	4	1605611-1605693	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	CACCCCAACTTGCTTTGCTTGGTGAA	26	1	5	1605637-1605667|1605637-1605667|1605637-1605667|1605637-1605667|1605637-1605667	NZ_CP041723.1_1390186-1390216|NZ_CP041723.1_680212-680242|NZ_CP041723.1_1940828-1940858|NZ_CP041723.1_1572072-1572042|NZ_CP041723.1_2178481-2178451	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|90aa|up_1|NZ_CP041723.1_1603738_1604008_+,NA|85aa|down_9|NZ_CP041723.1_1617001_1617256_-	NA|546aa|up_9|NZ_CP041723.1_1590291_1591929_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|482aa|up_8|NZ_CP041723.1_1592005_1593451_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|492aa|up_7|NZ_CP041723.1_1593883_1595359_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1499aa|up_6|NZ_CP041723.1_1595376_1599873_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|295aa|up_5|NZ_CP041723.1_1600016_1600901_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|372aa|up_4|NZ_CP041723.1_1600996_1602112_+	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown]	NA|261aa|up_3|NZ_CP041723.1_1602108_1602891_+	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown]	NA|132aa|up_2|NZ_CP041723.1_1603223_1603619_-	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|90aa|up_1|NZ_CP041723.1_1603738_1604008_+	NA	NA|324aa|up_0|NZ_CP041723.1_1604213_1605185_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|280aa|down_0|NZ_CP041723.1_1605991_1606831_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|220aa|down_1|NZ_CP041723.1_1606862_1607522_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|341aa|down_2|NZ_CP041723.1_1607524_1608547_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|581aa|down_3|NZ_CP041723.1_1608751_1610494_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_4|NZ_CP041723.1_1610490_1612272_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|382aa|down_5|NZ_CP041723.1_1612555_1613701_-	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|299aa|down_6|NZ_CP041723.1_1613707_1614604_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|177aa|down_7|NZ_CP041723.1_1614891_1615422_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|444aa|down_8|NZ_CP041723.1_1615528_1616860_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|85aa|down_9|NZ_CP041723.1_1617001_1617256_-	NA
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	5	1767296-1767764	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Type III-A,Type III-B,Type III-D,Type III-C	AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|118aa|down_0|NZ_CP041723.1_1767957_1768311_+,NA|109aa|down_8|NZ_CP041723.1_1782779_1783106_+,NA|96aa|down_9|NZ_CP041723.1_1783108_1783396_+	NA|292aa|up_9|NZ_CP041723.1_1757174_1758050_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	cas1|302aa|up_8|NZ_CP041723.1_1758554_1759460_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|NZ_CP041723.1_1759459_1759765_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|NZ_CP041723.1_1759780_1762054_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|NZ_CP041723.1_1762055_1762481_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|215aa|up_4|NZ_CP041723.1_1762482_1763127_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|NZ_CP041723.1_1763137_1764046_+	TIGR01903, Hypothetical_protein	csm5gr7|337aa|up_2|NZ_CP041723.1_1764049_1765060_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|370aa|up_1|NZ_CP041723.1_1765250_1766360_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|251aa|up_0|NZ_CP041723.1_1766356_1767109_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|118aa|down_0|NZ_CP041723.1_1767957_1768311_+	NA	NA|209aa|down_1|NZ_CP041723.1_1768663_1769290_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|2394aa|down_2|NZ_CP041723.1_1769286_1776468_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|262aa|down_3|NZ_CP041723.1_1777912_1778698_+	pfam04507, DUF576, Csa1 family	NA|256aa|down_4|NZ_CP041723.1_1778788_1779556_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_5|NZ_CP041723.1_1779625_1780411_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_6|NZ_CP041723.1_1780672_1781458_+	pfam04507, DUF576, Csa1 family	NA|442aa|down_7|NZ_CP041723.1_1781454_1782780_+	cd00519, Lipase_3, Lipase (class 3)	NA|109aa|down_8|NZ_CP041723.1_1782779_1783106_+	NA	NA|96aa|down_9|NZ_CP041723.1_1783108_1783396_+	NA
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	6	2106578-2106661	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	AACCCCAACTTGCTTTGCTTGGCGAA	26	1	5	2106604-2106635|2106604-2106635|2106604-2106635|2106604-2106635|2106604-2106635	NZ_CP041723.1_680212-680243|NZ_CP041723.1_1572072-1572041|NZ_CP041723.1_1957252-1957221|NZ_CP041723.1_1957309-1957278|NZ_CP041723.1_2178481-2178450	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|260aa|up_9|NZ_CP041723.1_2095257_2096037_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|204aa|up_8|NZ_CP041723.1_2096057_2096669_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|300aa|up_7|NZ_CP041723.1_2096686_2097586_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|393aa|up_6|NZ_CP041723.1_2097608_2098787_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|200aa|up_5|NZ_CP041723.1_2098803_2099403_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|407aa|up_4|NZ_CP041723.1_2099707_2100928_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|257aa|up_3|NZ_CP041723.1_2101316_2102087_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|616aa|up_2|NZ_CP041723.1_2102285_2104133_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|179aa|up_1|NZ_CP041723.1_2104134_2104671_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|431aa|up_0|NZ_CP041723.1_2105027_2106320_+	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|542aa|down_0|NZ_CP041723.1_2107242_2108868_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|187aa|down_1|NZ_CP041723.1_2108920_2109481_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|497aa|down_2|NZ_CP041723.1_2109848_2111339_+	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like	NA|569aa|down_3|NZ_CP041723.1_2111430_2113137_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|393aa|down_4|NZ_CP041723.1_2113384_2114563_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|90aa|down_5|NZ_CP041723.1_2114701_2114971_+	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|150aa|down_6|NZ_CP041723.1_2114960_2115410_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|531aa|down_7|NZ_CP041723.1_2116046_2117639_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|875aa|down_8|NZ_CP041723.1_2117887_2120512_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|272aa|down_9|NZ_CP041723.1_2120516_2121332_+	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	7	2289150-2289231	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	GCAAGTTGGGGTGGGGCCCCAACAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|64aa|up_8|NZ_CP041723.1_2278125_2278317_+,NA|508aa|down_5|NZ_CP041723.1_2295021_2296545_+	NA|452aa|up_9|NZ_CP041723.1_2276586_2277942_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|64aa|up_8|NZ_CP041723.1_2278125_2278317_+	NA	NA|89aa|up_7|NZ_CP041723.1_2278471_2278738_-	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|232aa|up_6|NZ_CP041723.1_2278892_2279588_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|412aa|up_5|NZ_CP041723.1_2279787_2281023_+	PRK08596, PRK08596, acetylornithine deacetylase; Validated	NA|722aa|up_4|NZ_CP041723.1_2281521_2283687_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|513aa|up_3|NZ_CP041723.1_2283779_2285318_-	TIGR03706, exo_poly_only, exopolyphosphatase	NA|516aa|up_2|NZ_CP041723.1_2285627_2287175_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|359aa|up_1|NZ_CP041723.1_2287409_2288486_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|152aa|up_0|NZ_CP041723.1_2288651_2289107_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|427aa|down_0|NZ_CP041723.1_2289477_2290758_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|277aa|down_1|NZ_CP041723.1_2291287_2292118_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|269aa|down_2|NZ_CP041723.1_2292114_2292921_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|258aa|down_3|NZ_CP041723.1_2292922_2293696_-	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|318aa|down_4|NZ_CP041723.1_2293821_2294775_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|508aa|down_5|NZ_CP041723.1_2295021_2296545_+	NA	NA|513aa|down_6|NZ_CP041723.1_2296561_2298100_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|526aa|down_7|NZ_CP041723.1_2298351_2299929_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|255aa|down_8|NZ_CP041723.1_2300244_2301009_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|260aa|down_9|NZ_CP041723.1_2301031_2301811_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	8	2321458-2321538	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	ACGGATAACGCAAGCTGGGGTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|122aa|up_7|NZ_CP041723.1_2315629_2315995_+,NA|315aa|down_9|NZ_CP041723.1_2333645_2334590_+	NA|227aa|up_9|NZ_CP041723.1_2314351_2315032_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|91aa|up_8|NZ_CP041723.1_2315341_2315614_+	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family	NA|122aa|up_7|NZ_CP041723.1_2315629_2315995_+	NA	NA|486aa|up_6|NZ_CP041723.1_2315984_2317442_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|209aa|up_5|NZ_CP041723.1_2317444_2318071_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|219aa|up_4|NZ_CP041723.1_2318120_2318777_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|104aa|up_3|NZ_CP041723.1_2318773_2319085_+	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|up_2|NZ_CP041723.1_2319218_2319860_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|234aa|up_1|NZ_CP041723.1_2320131_2320833_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|154aa|up_0|NZ_CP041723.1_2320832_2321294_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|254aa|down_0|NZ_CP041723.1_2321804_2322566_-	PRK14084, PRK14084, DNA-binding response regulator	NA|585aa|down_1|NZ_CP041723.1_2322566_2324321_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|465aa|down_2|NZ_CP041723.1_2324628_2326023_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|311aa|down_3|NZ_CP041723.1_2326205_2327138_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|89aa|down_4|NZ_CP041723.1_2327319_2327586_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|284aa|down_5|NZ_CP041723.1_2327789_2328641_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|274aa|down_6|NZ_CP041723.1_2328704_2329526_-	PRK01622, PRK01622, membrane protein insertase YidC	NA|504aa|down_7|NZ_CP041723.1_2329637_2331149_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|609aa|down_8|NZ_CP041723.1_2331430_2333257_+	pfam13520, AA_permease_2, Amino acid permease	NA|315aa|down_9|NZ_CP041723.1_2333645_2334590_+	NA
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	9	2409672-2409820	2	PILER-CR	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG	48	1	2	2409729-2409745|2409729-2409745	NZ_CP041723.1_110326-110342|NZ_CP041723.1_1333570-1333554	NA	2	2	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|126aa|down_2|NZ_CP041723.1_2412830_2413208_-,NA|71aa|down_3|NZ_CP041723.1_2413225_2413438_-,NA|102aa|down_4|NZ_CP041723.1_2413912_2414218_-	NA|151aa|up_9|NZ_CP041723.1_2397952_2398405_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|572aa|up_8|NZ_CP041723.1_2398417_2400133_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|136aa|up_7|NZ_CP041723.1_2400132_2400540_-	PRK13201, ureB, urease subunit beta; Reviewed	NA|101aa|up_6|NZ_CP041723.1_2400552_2400855_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|299aa|up_5|NZ_CP041723.1_2401062_2401959_+	TIGR03441, urea_trans_yut, urea transporter, Yersinia type	NA|196aa|up_4|NZ_CP041723.1_2402178_2402766_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|up_3|NZ_CP041723.1_2402969_2404745_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|579aa|up_2|NZ_CP041723.1_2405462_2407199_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|302aa|up_1|NZ_CP041723.1_2407753_2408659_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|215aa|up_0|NZ_CP041723.1_2408889_2409534_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|211aa|down_0|NZ_CP041723.1_2410056_2410689_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|538aa|down_1|NZ_CP041723.1_2411016_2412630_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|126aa|down_2|NZ_CP041723.1_2412830_2413208_-	NA	NA|71aa|down_3|NZ_CP041723.1_2413225_2413438_-	NA	NA|102aa|down_4|NZ_CP041723.1_2413912_2414218_-	NA	NA|212aa|down_5|NZ_CP041723.1_2414416_2415052_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|383aa|down_6|NZ_CP041723.1_2415259_2416408_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|284aa|down_7|NZ_CP041723.1_2416547_2417399_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|177aa|down_8|NZ_CP041723.1_2417442_2417973_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|204aa|down_9|NZ_CP041723.1_2418399_2419011_-	pfam01381, HTH_3, Helix-turn-helix
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	10	2462394-2462480	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	GCAAGTTGGGGTGGGGCCCCAACACAAAGA	30	1	3	2462424-2462450|2462424-2462450|2462424-2462450	NZ_CP041723.1_1882346-1882372|NZ_CP041723.1_2505245-2505271|NZ_CP041723.1_2505302-2505328	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|130aa|down_2|NZ_CP041723.1_2464542_2464932_-	NA|225aa|up_9|NZ_CP041723.1_2451611_2452286_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_8|NZ_CP041723.1_2452413_2453475_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_7|NZ_CP041723.1_2453471_2454140_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_6|NZ_CP041723.1_2454230_2455184_-	cd06259, YdcF-like, YdcF-like	NA|154aa|up_5|NZ_CP041723.1_2455359_2455821_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|458aa|up_4|NZ_CP041723.1_2455918_2457292_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|NZ_CP041723.1_2457393_2458599_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|NZ_CP041723.1_2459040_2459592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|NZ_CP041723.1_2459724_2460372_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|NZ_CP041723.1_2460384_2462349_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|NZ_CP041723.1_2462685_2463393_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|303aa|down_1|NZ_CP041723.1_2463601_2464510_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|NZ_CP041723.1_2464542_2464932_-	NA	NA|156aa|down_3|NZ_CP041723.1_2464937_2465405_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|NZ_CP041723.1_2465523_2466471_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|NZ_CP041723.1_2466516_2467569_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|NZ_CP041723.1_2467693_2468302_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|72aa|down_7|NZ_CP041723.1_2468539_2468755_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|NZ_CP041723.1_2469309_2470320_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|NZ_CP041723.1_2470395_2471049_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008728715.1_ASM872871v1	NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	11	2498350-2498429	10	CRISPRCasFinder	no	WYL	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Unclear	TCGATCAAAGCAAGTTGGGGTGG	23	1	6	2498373-2498406|2498373-2498406|2498373-2498406|2498373-2498406|2498373-2498406|2498373-2498406	NZ_CP041723.1_1279646-1279679|NZ_CP041723.1_198799-198766|NZ_CP041723.1_360023-360056|NZ_CP041723.1_949047-949080|NZ_CP041723.1_1302924-1302957|NZ_CP041723.1_1746917-1746884	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|78aa|up_1|NZ_CP041723.1_2496950_2497184_+,NA|61aa|down_7|NZ_CP041723.1_2505180_2505363_+	NA|463aa|up_9|NZ_CP041723.1_2486614_2488003_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|296aa|up_8|NZ_CP041723.1_2488016_2488904_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|350aa|up_7|NZ_CP041723.1_2488900_2489950_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	WYL|230aa|up_6|NZ_CP041723.1_2490118_2490808_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|259aa|up_5|NZ_CP041723.1_2491198_2491975_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|317aa|up_4|NZ_CP041723.1_2492093_2493044_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_CP041723.1_2493343_2496298_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|157aa|up_2|NZ_CP041723.1_2496297_2496768_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_CP041723.1_2496950_2497184_+	NA	NA|258aa|up_0|NZ_CP041723.1_2497203_2497977_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|318aa|down_0|NZ_CP041723.1_2498701_2499655_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|105aa|down_1|NZ_CP041723.1_2499723_2500038_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|111aa|down_2|NZ_CP041723.1_2500037_2500370_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|179aa|down_3|NZ_CP041723.1_2500782_2501319_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_4|NZ_CP041723.1_2501617_2502040_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|358aa|down_5|NZ_CP041723.1_2502271_2503345_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|464aa|down_6|NZ_CP041723.1_2503387_2504779_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|61aa|down_7|NZ_CP041723.1_2505180_2505363_+	NA	NA|246aa|down_8|NZ_CP041723.1_2505489_2506227_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|659aa|down_9|NZ_CP041723.1_2506797_2508774_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
