The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	0	26993	2660394	holin,capsid,head,tail	Staphylococcus_phage(78.26%)	23	NA	NA
WP_014533264.1|1063_2014_+|head	phage head morphogenesis protein	head	A0A1W6JNS6	Staphylococcus_phage	79.7	1.7e-145
WP_002478891.1|3165_4086_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	89.5	5.8e-154
WP_002478892.1|4107_4377_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	80.9	2.3e-34
WP_002478893.1|4378_4708_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	80.7	6.6e-44
WP_150861611.1|4704_5007_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	83.0	1.4e-43
WP_002478895.1|5008_5368_+	hypothetical protein	NA	A0A1W6JNQ6	Staphylococcus_phage	81.0	2.6e-49
WP_002478896.1|5367_5757_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	80.6	7.1e-53
WP_002478897.1|5804_6359_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	94.0	1.5e-88
WP_002478898.1|6419_6779_+	hypothetical protein	NA	A0A1W6JNQ1	Staphylococcus_phage	91.6	8.3e-56
WP_002478899.1|6823_7168_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	95.6	3.9e-55
WP_150861612.1|7182_10716_+|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	67.9	1.4e-107
WP_002478901.1|10727_11687_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	90.3	2.3e-169
WP_002478902.1|11697_12933_+	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	88.5	2.6e-213
WP_002478903.1|12933_14808_+	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	89.6	0.0e+00
WP_150861613.1|14821_15979_+	DUF2479 domain-containing protein	NA	A0A1W6JNR8	Staphylococcus_phage	74.9	4.4e-167
WP_002478905.1|15994_16417_+	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	66.9	4.7e-50
WP_002478906.1|16397_16796_+	hypothetical protein	NA	A0A2H4JAU6	uncultured_Caudovirales_phage	51.5	6.0e-31
WP_002478908.1|17271_18981_+	CHAP domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	81.9	9.2e-262
WP_150861614.1|19034_21806_+	DUF2479 domain-containing protein	NA	Q4ZC48	Staphylococcus_virus	52.1	3.6e-215
WP_002478910.1|21862_22135_+|holin	phage holin	holin	A0A2H4JHI3	uncultured_Caudovirales_phage	85.6	2.0e-38
WP_150861615.1|22134_23544_+	CHAP domain-containing protein	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	84.0	1.3e-237
WP_002478912.1|24023_24584_+	hypothetical protein	NA	U3PBN3	Staphylococcus_phage	84.9	3.3e-91
WP_104013903.1|25580_26993_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.7	5.0e-48
>prophage 2
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	58531	60337	2660394		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002478930.1|58531_60337_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	40.0	4.0e-98
>prophage 3
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	69866	73301	2660394		Clostridium_phage(50.0%)	4	NA	NA
WP_002478940.1|69866_70313_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	50.7	2.2e-37
WP_002461274.1|70390_71101_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_002478941.1|71279_71939_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_002478942.1|71999_73301_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.3e-135
>prophage 4
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	85101	86709	2660394		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_002478950.1|85101_86709_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	6.0e-146
>prophage 5
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	94095	100041	2660394		Bacillus_virus(33.33%)	7	NA	NA
WP_002478955.1|94095_94695_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	44.6	2.5e-33
WP_002461245.1|94694_95771_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_002478956.1|95757_96597_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002478957.1|96684_97719_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	43.1	1.4e-42
WP_002478958.1|97724_98147_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_150861617.1|98255_98780_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_002478960.1|98802_100041_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.7	1.9e-99
>prophage 6
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	111074	111476	2660394		Streptococcus_pyogenes_phage(100.0%)	1	NA	NA
WP_002461219.1|111074_111476_+	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	34.7	4.2e-16
>prophage 7
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	117348	117990	2660394		Tunisvirus(100.0%)	1	NA	NA
WP_002478971.1|117348_117990_-	HD domain-containing protein	NA	V9SGZ2	Tunisvirus	30.0	1.7e-11
>prophage 8
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	125148	126663	2660394		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_002461201.1|125148_126663_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.6	1.2e-58
>prophage 9
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	131329	134758	2660394		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_002461192.1|131329_131680_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	33.3	8.2e-08
WP_002461191.1|132113_133115_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_002461190.1|133205_133532_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_002478979.1|133533_134013_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_002461188.1|133987_134758_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.6	3.2e-20
>prophage 10
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	148746	153419	2660394		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_002477910.1|148746_150297_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.2	8.6e-09
WP_150861618.1|150318_151323_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_002461439.1|151455_151689_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_002477912.1|151685_153419_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	32.7	7.8e-67
>prophage 11
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	157124	162383	2660394	tRNA	Moraxella_phage(33.33%)	3	NA	NA
WP_002477915.1|157124_158147_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.5	5.2e-63
WP_150861619.1|158471_160085_-	MutS family DNA mismatch repair protein	NA	A0A1B1IS82	uncultured_Mediterranean_phage	29.0	2.4e-17
WP_002477916.1|160439_162383_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2H4UUX5	Bodo_saltans_virus	28.9	3.3e-50
>prophage 12
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	167630	170898	2660394		Bacillus_phage(50.0%)	3	NA	NA
WP_002477918.1|167630_169115_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	24.2	2.4e-16
WP_002477919.1|169115_170090_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_002461418.1|170181_170898_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	31.0	1.5e-24
>prophage 13
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	178060	180027	2660394		uncultured_virus(100.0%)	2	NA	NA
WP_002461410.1|178060_178345_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	45.2	1.2e-12
WP_002477926.1|178404_180027_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.2	3.4e-157
>prophage 14
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	183107	185548	2660394		Staphylococcus_phage(100.0%)	3	NA	NA
WP_002461402.1|183107_183995_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.7	9.9e-18
WP_002477928.1|183991_184657_+	membrane protein	NA	NA	NA	NA	NA
WP_002461399.1|184675_185548_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.8	6.8e-27
>prophage 15
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	195685	196771	2660394		Streptomyces_phage(100.0%)	1	NA	NA
WP_012990794.1|195685_196771_+	pectate lyase	NA	D7NW65	Streptomyces_phage	31.8	9.0e-37
>prophage 16
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	201078	211316	2660394		Bacillus_virus(40.0%)	9	NA	NA
WP_002477938.1|201078_202548_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.2	1.1e-111
WP_002477939.1|202540_203380_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.1e-63
WP_002477940.1|203452_204055_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_012990796.1|204035_204215_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_002477941.1|204591_205887_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.2	2.7e-16
WP_002461369.1|205982_206285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002477942.1|206424_207117_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_002477943.1|207116_209309_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-133
WP_002477944.1|209312_211316_+	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.6	1.3e-110
>prophage 17
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	219004	224491	2660394		Catovirus(33.33%)	6	NA	NA
WP_002477949.1|219004_220003_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	26.1	5.0e-18
WP_002477950.1|220085_221471_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	42.1	3.0e-101
WP_002477951.1|221645_222194_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_002477952.1|222295_222601_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002477953.1|222642_223722_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_094449197.1|223936_224491_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	38.9	2.9e-31
>prophage 18
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	247851	251541	2660394		Aeropyrum_pernix_spindle-shaped_virus(50.0%)	3	NA	NA
WP_002477969.1|247851_248907_+	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	31.8	6.9e-26
WP_002461312.1|249004_249547_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002461311.1|249804_251541_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.0	7.3e-49
>prophage 19
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	268169	268895	2660394		Planktothrix_phage(100.0%)	1	NA	NA
WP_002477975.1|268169_268895_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.5	2.4e-38
>prophage 20
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	278907	279252	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002458766.1|278907_279252_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 21
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	289512	290250	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002477990.1|289512_290250_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.3	1.0e-20
>prophage 22
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	298241	328494	2660394	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
WP_002458784.1|298241_299636_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
WP_002477998.1|299642_300647_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|300643_300901_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002458787.1|300967_301441_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
WP_002477999.1|301421_302195_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	6.5e-98
WP_002458789.1|302258_303851_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	1.1e-274
WP_002458790.1|304222_305419_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|305517_306426_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002478000.1|306540_307374_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.4e-119
WP_002478001.1|307558_307912_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|307908_308274_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|308342_308648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478004.1|308904_309618_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|309748_310201_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002458798.1|310181_310628_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|310643_311114_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|311311_311536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|311737_312592_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_002478006.1|312975_314475_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002478007.1|314786_315893_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
WP_002458804.1|315900_316533_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|316545_317727_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|317739_318198_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_002478009.1|318275_319262_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	2.7e-133
WP_002458808.1|319478_320312_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002458809.1|320804_321206_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|321256_321820_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002458811.1|321816_322770_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
WP_002478010.1|322873_324049_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.8e-176
WP_002478011.1|324370_326785_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
WP_002458814.1|326803_327115_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002478012.1|327234_328494_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	3.7e-42
>prophage 23
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	338917	344175	2660394		Indivirus(33.33%)	4	NA	NA
WP_002458827.1|338917_339229_+	thioredoxin family protein	NA	A0A1V0SD63	Indivirus	34.6	1.6e-07
WP_002478019.1|339323_340184_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	85.4	1.3e-62
WP_037540620.1|340209_340806_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_002478020.1|340827_344175_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	46.4	2.8e-81
>prophage 24
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	353314	355024	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_150861622.1|353314_355024_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	86.6	9.2e-246
>prophage 25
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	358503	361465	2660394	protease,tRNA	Serratia_phage(50.0%)	2	NA	NA
WP_002458844.1|358503_359766_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	42.1	6.0e-85
WP_002478028.1|360241_361465_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	30.1	2.8e-10
>prophage 26
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	365715	370025	2660394		Staphylococcus_phage(50.0%)	4	NA	NA
WP_002478031.1|365715_367335_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	47.9	4.9e-55
WP_002478032.1|367324_368485_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_002478033.1|368753_369200_-	SACOL1771 family peroxiredoxin	NA	NA	NA	NA	NA
WP_002478034.1|369278_370025_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	30.0	1.9e-14
>prophage 27
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	386793	389988	2660394		Streptomyces_phage(100.0%)	1	NA	NA
WP_002478046.1|386793_389988_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	31.0	6.5e-136
>prophage 28
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	394462	396223	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002478049.1|394462_396223_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	76.7	1.4e-31
>prophage 29
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	401114	407621	2660394		Feldmannia_irregularis_virus(25.0%)	4	NA	NA
WP_002478052.1|401114_401825_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	1.7e-07
WP_002458881.1|401824_403534_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	28.6	4.0e-23
WP_002478053.1|404098_406732_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	34.1	9.4e-48
WP_002478054.1|406748_407621_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	38.0	4.5e-39
>prophage 30
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	412735	424050	2660394	protease,tRNA	Brevibacillus_phage(20.0%)	10	NA	NA
WP_002478058.1|412735_413656_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	30.9	6.7e-33
WP_002458891.1|414015_415953_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.8	4.9e-118
WP_002458892.1|416416_417910_+	amino acid permease	NA	NA	NA	NA	NA
WP_002478060.1|418121_418649_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.6	8.2e-12
WP_002458894.1|418677_418878_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002458895.1|418925_419282_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002478061.1|419561_420173_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.7	1.7e-21
WP_002478062.1|420189_421113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478063.1|421276_422584_+	trigger factor	NA	NA	NA	NA	NA
WP_002458899.1|422787_424050_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.3	5.0e-140
>prophage 31
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	433281	435912	2660394	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_002478071.1|433281_435912_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	40.8	8.0e-156
>prophage 32
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	445277	479399	2660394	tRNA	uncultured_Mediterranean_phage(18.75%)	29	NA	NA
WP_002478078.1|445277_446282_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002478079.1|446284_447310_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002478080.1|447328_448468_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
WP_002458927.1|448486_448747_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_002478081.1|448932_451221_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_002478082.1|451481_453758_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.7e-66
WP_002458930.1|453777_454296_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
WP_002478083.1|454555_456745_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.1	1.8e-12
WP_002478084.1|456760_457213_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_150861624.1|457209_458085_+	SH3 domain-containing protein	NA	A0A0N9SGH1	Paenibacillus_phage	34.9	2.1e-12
WP_150861625.1|458419_459679_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002478087.1|459701_461468_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	22.5	4.7e-19
WP_002458936.1|461855_462647_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_002478088.1|462678_463947_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.0	2.0e-104
WP_002458938.1|464030_464453_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458939.1|464562_464703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478089.1|464904_465906_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002458941.1|466135_467278_+	cysteine desulfurase	NA	A0A141ZJV0	Faustovirus	29.5	5.2e-27
WP_002458942.1|467277_468390_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_002478090.1|468531_469203_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002478091.1|469204_471592_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	28.6	1.2e-65
WP_002478092.1|471859_474490_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.7	1.4e-64
WP_002458946.1|474555_474816_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002458947.1|474819_475248_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002458948.1|475260_475569_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002478093.1|475931_476573_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_002478094.1|476569_477493_+	U32 family peptidase	NA	Q6DW11	Phage_TP	29.3	9.4e-19
WP_002478095.1|477504_478773_+	U32 family peptidase	NA	Q6DW11	Phage_TP	30.8	2.0e-35
WP_002458952.1|478772_479399_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.6	3.7e-35
>prophage 33
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	492673	498859	2660394		Bacillus_phage(33.33%)	6	NA	NA
WP_002458970.1|492673_493135_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	55.4	5.1e-34
WP_002478105.1|493140_495342_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	33.1	9.0e-28
WP_002478106.1|495408_496383_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_002458974.1|496430_496679_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_141739458.1|496697_496910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478107.1|497035_498859_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	40.1	1.5e-20
>prophage 34
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	501951	505122	2660394		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
WP_002478110.1|501951_503787_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.1	1.1e-138
WP_002478111.1|503988_505122_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.2	2.5e-29
>prophage 35
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	511684	512635	2660394		Erwinia_phage(100.0%)	1	NA	NA
WP_002478116.1|511684_512635_+	PhoH family protein	NA	W8D063	Erwinia_phage	42.1	1.4e-46
>prophage 36
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	515658	529287	2660394	tRNA	Catovirus(14.29%)	13	NA	NA
WP_002478117.1|515658_517050_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SAN4	Catovirus	27.3	4.7e-46
WP_014533295.1|517373_517997_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002458996.1|518010_518829_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002478118.1|518889_520704_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	8.7e-53
WP_002478119.1|520996_522103_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.8e-37
WP_002478120.1|522171_522861_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002478121.1|522850_523951_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002478122.1|523987_525331_+	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	32.9	1.1e-52
WP_002478123.1|525340_526231_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.1	2.4e-27
WP_002478124.1|526342_527119_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.0	4.6e-19
WP_002478125.1|527197_528037_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002459005.1|528039_528459_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002459006.1|528684_529287_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	51.7	4.8e-56
>prophage 37
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	541683	544498	2660394		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_002478134.1|541683_543033_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	37.9	1.0e-61
WP_002478135.1|543022_544498_+	glycine dehydrogenase subunit 2	NA	E3ST28	Prochlorococcus_phage	42.0	5.6e-82
>prophage 38
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	552086	553424	2660394		Klosneuvirus(100.0%)	1	NA	NA
WP_002478139.1|552086_553424_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	30.0	5.9e-38
>prophage 39
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	558087	559512	2660394		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002478143.1|558087_559512_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.3	2.9e-35
>prophage 40
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	564665	567272	2660394		Brevibacillus_phage(50.0%)	2	NA	NA
WP_002478148.1|564665_565790_+	M20/M25/M40 family metallo-hydrolase	NA	A0A0K2CPK3	Brevibacillus_phage	27.4	3.4e-07
WP_002478149.1|565865_567272_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	1.6e-30
>prophage 41
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	571486	572971	2660394		Cyanophage(100.0%)	1	NA	NA
WP_002478153.1|571486_572971_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	38.3	1.6e-81
>prophage 42
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	578484	588690	2660394		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002478160.1|578484_579372_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	32.1	1.1e-37
WP_002478161.1|579384_579900_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_002459061.1|579993_580725_+	segregation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_012990840.1|580717_581251_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
WP_002478163.1|581253_581991_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|582140_582866_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002478164.1|582849_584598_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|585321_585864_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|586005_586254_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002459068.1|586364_587324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459069.1|587310_588690_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 43
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	598897	602300	2660394		Bacillus_phage(33.33%)	5	NA	NA
WP_002478172.1|598897_599170_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	72.2	6.1e-27
WP_002478173.1|599445_600012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478174.1|600024_600750_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_094449174.1|600691_601708_+	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.9	7.4e-09
WP_094449196.1|601829_602300_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	44.7	4.6e-30
>prophage 44
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	611092	618228	2660394	tRNA	Bacillus_virus(25.0%)	5	NA	NA
WP_002459092.1|611092_612295_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	34.0	1.7e-28
WP_002478183.1|612281_613253_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_002478184.1|613276_615958_+	ATP-dependent helicase	NA	A0A127AW80	Bacillus_phage	23.3	1.0e-28
WP_002459095.1|616065_617358_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	29.9	9.6e-54
WP_002459096.1|617541_618228_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	30.9	4.2e-08
>prophage 45
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	621497	623271	2660394		Geobacillus_phage(50.0%)	3	NA	NA
WP_002459100.1|621497_622124_-	Holliday junction resolvase RecU	NA	Q0H273	Geobacillus_phage	32.0	1.1e-15
WP_002478186.1|622373_622715_+	DUF1798 family protein	NA	NA	NA	NA	NA
WP_002459102.1|622716_623271_+	DUF1273 domain-containing protein	NA	U5J9F7	Bacillus_phage	27.2	2.2e-07
>prophage 46
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	629814	635321	2660394		Acinetobacter_phage(75.0%)	5	NA	NA
WP_002478190.1|629814_630696_+	5'-3' exonuclease	NA	A0A0N7ACJ6	Bacillus_phage	36.2	2.7e-39
WP_002478191.1|631560_632964_+	anthranilate synthase component I	NA	NA	NA	NA	NA
WP_002478192.1|632960_633527_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	34.7	4.1e-25
WP_002478193.1|633534_634536_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	32.6	2.1e-32
WP_002478194.1|634535_635321_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.2	3.8e-29
>prophage 47
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	644145	647588	2660394		Streptococcus_phage(50.0%)	3	NA	NA
WP_002478201.1|644145_645954_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	44.8	2.4e-143
WP_002459122.1|646032_646683_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_002459123.1|646688_647588_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.8	7.2e-16
>prophage 48
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	651975	653577	2660394		Klosneuvirus(100.0%)	1	NA	NA
WP_002459128.1|651975_653577_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	1.6e-50
>prophage 49
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	661497	667625	2660394	lysis	Yellowstone_lake_phycodnavirus(33.33%)	7	NA	NA
WP_002478212.1|661497_662763_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	22.7	2.6e-11
WP_014533307.1|663442_664261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002433901.1|664671_664872_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	6.5e-18
WP_002459141.1|665076_665385_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_002459142.1|665552_665822_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002478214.1|665837_666461_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_002478215.1|666485_667625_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	29.1	1.9e-29
>prophage 50
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	671056	671848	2660394		Halovirus(100.0%)	1	NA	NA
WP_002478216.1|671056_671848_-	MoxR family ATPase	NA	R4TG24	Halovirus	27.9	3.6e-11
>prophage 51
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	679011	691038	2660394		Staphylococcus_phage(50.0%)	16	NA	NA
WP_002459153.1|679011_679671_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	2.1e-36
WP_002459155.1|680321_680945_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002459156.1|680959_682033_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002459157.1|682050_682554_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002478221.1|682569_684021_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	29.9	3.1e-24
WP_002478222.1|684189_684411_-	YozE family protein	NA	NA	NA	NA	NA
WP_002459160.1|684410_684911_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002459161.1|684923_685352_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002459162.1|685344_685872_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002459163.1|685966_686806_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	73.6	5.1e-48
WP_002459164.1|687291_687777_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	2.2e-72
WP_002478224.1|687817_688774_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	79.2	2.3e-153
WP_002478225.1|688967_689405_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_002459167.1|689637_689892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459168.1|689902_690097_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_002478226.1|690333_691038_+	queuosine precursor transporter	NA	A0A1W7AG82	Streptococcus_virus	24.7	2.5e-08
>prophage 52
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	702168	703431	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002459182.1|702168_703431_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	45.8	1.2e-96
>prophage 53
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	713817	718217	2660394		Bacillus_virus(100.0%)	2	NA	NA
WP_002478236.1|713817_716220_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.9	6.1e-102
WP_002459194.1|716216_718217_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	2.3e-118
>prophage 54
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	723508	725149	2660394		Vibrio_phage(100.0%)	1	NA	NA
WP_002459199.1|723508_725149_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.6	7.7e-24
>prophage 55
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	728873	729998	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002478241.1|728873_729998_-	exonuclease SbcCD subunit D	NA	A1YTR7	Staphylococcus_phage	25.0	1.8e-08
>prophage 56
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	734311	739491	2660394		Phage_Wrath(33.33%)	7	NA	NA
WP_002459208.1|734311_734935_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	7.7e-17
WP_111703888.1|734950_735088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002492002.1|735148_736081_-	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_002459210.1|736185_737163_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	90.5	1.0e-169
WP_002459211.1|737326_737596_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002459212.1|737756_737906_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002478245.1|737985_739491_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.1	1.1e-88
>prophage 57
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	749730	750273	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002459223.1|749730_750273_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	45.8	2.0e-21
>prophage 58
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	753456	754329	2660394		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_002478253.1|753456_754329_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	32.1	5.5e-21
>prophage 59
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	762347	762824	2660394		Fowlpox_virus(100.0%)	1	NA	NA
WP_002459237.1|762347_762824_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	37.6	1.1e-23
>prophage 60
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	768775	775011	2660394		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_002459244.1|768775_769594_-	aquaporin family protein	NA	M1HH19	Acanthocystis_turfacea_Chlorella_virus	39.6	8.8e-37
WP_002459245.1|769923_770457_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_002478263.1|770471_772385_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.8	5.2e-64
WP_002478264.1|772401_775011_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	24.5	5.9e-42
>prophage 61
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	778156	778780	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014533313.1|778156_778780_-	hypothetical protein	NA	A0A0D3MVF0	Staphylococcus_phage	42.4	1.1e-42
>prophage 62
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	785432	786479	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002478267.1|785432_786479_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	68.5	1.2e-123
>prophage 63
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	790607	796346	2660394		Bodo_saltans_virus(33.33%)	4	NA	NA
WP_002478269.1|790607_791900_-	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	27.1	1.3e-05
WP_002478270.1|791892_793161_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	28.9	8.3e-42
WP_002459267.1|793238_793973_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002478271.1|793976_796346_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.2	1.1e-82
>prophage 64
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	803751	812627	2660394		Cafeteria_roenbergensis_virus(50.0%)	6	NA	NA
WP_002478274.1|803751_805908_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.0	5.9e-24
WP_002478275.1|805912_806230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037540354.1|806226_806511_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002478276.1|806528_807692_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002478277.1|807712_808180_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_060795586.1|808316_812627_-	PolC-type DNA polymerase III	NA	A0A1X9I5C8	Streptococcus_phage	38.9	2.1e-20
>prophage 65
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	819983	820745	2660394		Flavobacterium_phage(100.0%)	1	NA	NA
WP_002478281.1|819983_820745_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	40.0	4.7e-24
>prophage 66
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	825368	839029	2660394	protease,tRNA	Erwinia_phage(16.67%)	11	NA	NA
WP_002478282.1|825368_826772_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.7	6.2e-30
WP_002478283.1|826818_827361_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_002459293.1|827361_828255_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.8	2.1e-28
WP_002459294.1|828386_829694_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_002478284.1|829745_831815_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.4	1.4e-107
WP_012990865.1|831986_832859_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_002478287.1|833460_834696_-	aminoacyltransferase	NA	NA	NA	NA	NA
WP_002478288.1|834709_835858_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	64.0	6.8e-51
WP_002478289.1|836054_836963_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	34.2	1.7e-17
WP_002478290.1|836984_838151_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_002478291.1|838261_839029_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	39.6	1.0e-23
>prophage 67
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	857916	859917	2660394		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_002459316.1|857916_858648_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	30.3	1.2e-24
WP_001830184.1|858766_859000_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_002459317.1|859182_859917_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.6	1.7e-18
>prophage 68
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	869910	871914	2660394		Indivirus(100.0%)	1	NA	NA
WP_002478308.1|869910_871914_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	33.9	4.7e-23
>prophage 69
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	875061	875994	2660394	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002478312.1|875061_875994_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	29.2	9.5e-11
>prophage 70
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	879233	881495	2660394		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_002478315.1|879233_880433_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.8	8.1e-39
WP_002459336.1|880659_880872_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002459337.1|880871_881495_-	guanylate kinase	NA	A0A0M5KCK5	Mollivirus	38.9	1.4e-10
>prophage 71
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	884547	885159	2660394		Pandoravirus(100.0%)	1	NA	NA
WP_002459341.1|884547_885159_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	32.8	4.4e-25
>prophage 72
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	889194	893801	2660394		Halovirus(33.33%)	4	NA	NA
WP_002478321.1|889194_890295_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.3	1.6e-62
WP_002459345.1|890296_891571_-	dihydroorotase	NA	NA	NA	NA	NA
WP_037553650.1|891570_892467_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HQL8	Paramecium_bursaria_Chlorella_virus	30.9	8.2e-28
WP_002459347.1|892490_893801_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.9	9.7e-54
>prophage 73
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	897805	900556	2660394	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002478326.1|897805_900556_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	27.6	2.4e-86
>prophage 74
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	920138	920720	2660394		Cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_002478337.1|920138_920720_-	XTP/dITP diphosphatase	NA	D2KCJ6	Cassava_brown_streak_virus	34.2	2.3e-15
>prophage 75
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	927419	931970	2660394		Staphylococcus_phage(33.33%)	3	NA	NA
WP_002459379.1|927419_927734_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	49.5	1.6e-26
WP_002478341.1|927896_930248_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	38.9	5.1e-13
WP_002478342.1|930257_931970_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	23.5	2.5e-17
>prophage 76
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	936861	937920	2660394	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002459387.1|936861_937920_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	36.3	1.8e-29
>prophage 77
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	941447	944285	2660394		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_002459391.1|941447_941930_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.4	9.2e-26
WP_002478348.1|941922_942474_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_002478349.1|942542_942932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459394.1|942948_943200_-	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
WP_002478350.1|943358_944285_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.6	2.6e-13
>prophage 78
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	956113	957961	2660394		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002459409.1|956113_957961_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	24.2	4.8e-22
>prophage 79
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	966300	975331	2660394		Synechococcus_phage(50.0%)	9	NA	NA
WP_014533325.1|966300_967395_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.0	4.8e-38
WP_002478365.1|967409_967949_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002459421.1|968334_968622_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_002459422.1|968825_970232_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.8	4.5e-49
WP_002478366.1|970235_971540_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_002459424.1|971752_972730_-	alpha-ketoacid dehydrogenase subunit beta	NA	E3SJ83	Synechococcus_phage	25.5	3.9e-07
WP_002459425.1|972733_973846_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_002459426.1|974012_974642_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_002478367.1|974779_975331_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	1.9e-14
>prophage 80
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	983375	984548	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002478374.1|983375_984548_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.1	2.2e-73
>prophage 81
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	987843	1002664	2660394		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_002459442.1|987843_989247_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	28.6	5.2e-13
WP_002459443.1|989239_990049_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_012990886.1|990362_991610_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002478376.1|991632_993111_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.0	1.5e-74
WP_002478377.1|993126_993693_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|993692_994724_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_002459448.1|994716_996201_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
WP_002478379.1|996179_998369_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|998361_999033_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|999034_999295_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|999294_999999_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002478382.1|999999_1001127_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002478383.1|1001113_1001596_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
WP_002478384.1|1001806_1002664_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	40.2	4.4e-39
>prophage 82
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1014696	1018509	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002478390.1|1014696_1018509_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	45.4	3.1e-52
>prophage 83
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1030264	1030804	2660394	capsid	Staphylococcus_phage(100.0%)	1	NA	NA
WP_012990891.1|1030264_1030804_-|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	51.7	2.1e-42
>prophage 84
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1037653	1042497	2660394	protease	uncultured_Mediterranean_phage(33.33%)	3	NA	NA
WP_002478406.1|1037653_1039630_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	24.7	1.9e-13
WP_002459489.1|1039829_1040627_-	TerC family protein	NA	S5MAL1	Bacillus_phage	39.6	2.0e-30
WP_002478407.1|1040934_1042497_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.6	4.9e-36
>prophage 85
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1061417	1063226	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002478419.1|1061417_1063226_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	25.3	2.2e-48
>prophage 86
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1069802	1071816	2660394		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_002459519.1|1069802_1070744_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.6	2.1e-05
WP_002478424.1|1070733_1071816_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	1.3e-19
>prophage 87
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1077276	1079886	2660394		Escherichia_phage(100.0%)	1	NA	NA
WP_012990895.1|1077276_1079886_-	ATP-dependent chaperone ClpB	NA	A0A1C3S747	Escherichia_phage	33.2	1.7e-118
>prophage 88
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1084823	1088474	2660394		Bacillus_virus(100.0%)	1	NA	NA
WP_002478433.1|1084823_1088474_-	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	22.7	3.1e-17
>prophage 89
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1105139	1105733	2660394		Aureococcus_anophage(100.0%)	1	NA	NA
WP_002459548.1|1105139_1105733_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	38.3	3.3e-25
>prophage 90
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1115430	1124651	2660394		Bacillus_phage(50.0%)	6	NA	NA
WP_002478454.1|1115430_1116909_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	35.3	6.7e-51
WP_002459561.1|1117124_1118333_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002478455.1|1118616_1119654_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_002478456.1|1119654_1121388_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.0	1.7e-29
WP_002459564.1|1121412_1123167_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.8	1.4e-36
WP_002478457.1|1123190_1124651_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	28.7	1.8e-11
>prophage 91
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1131532	1137556	2660394		Tupanvirus(100.0%)	1	NA	NA
WP_014533331.1|1131532_1137556_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	28.0	1.1e-40
>prophage 92
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1140824	1141184	2660394		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_037540859.1|1140824_1141184_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 93
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1145330	1147999	2660394		Pseudomonas_phage(50.0%)	2	NA	NA
WP_002459581.1|1145330_1146545_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.3	3.8e-20
WP_002459582.1|1146541_1147999_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	27.4	8.6e-35
>prophage 94
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1165275	1169351	2660394	integrase	Clostridium_phage(50.0%)	4	1160124:1160139	1175337:1175352
1160124:1160139	attL	GAACAAGAAATTGATA	NA	NA	NA	NA
WP_002478483.1|1165275_1166379_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	30.6	1.8e-13
WP_002478484.1|1166389_1168462_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002478485.1|1168470_1168836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478486.1|1168937_1169351_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	52.6	4.0e-30
1175337:1175352	attR	TATCAATTTCTTGTTC	NA	NA	NA	NA
>prophage 95
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1183365	1187799	2660394		Mycobacterium_phage(100.0%)	1	NA	NA
WP_150861635.1|1183365_1187799_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	20.6	7.2e-24
>prophage 96
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1198956	1202514	2660394		environmental_halophage(50.0%)	3	NA	NA
WP_002459625.1|1198956_1200198_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.5	6.9e-118
WP_002479299.1|1200327_1201635_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002459627.1|1201752_1202514_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.8	6.8e-07
>prophage 97
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1207046	1219458	2660394		Planktothrix_phage(16.67%)	20	NA	NA
WP_002479303.1|1207046_1208072_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.6e-27
WP_002459654.1|1208320_1208620_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002479304.1|1208612_1208999_-	topiosmerase	NA	NA	NA	NA	NA
WP_002459656.1|1209221_1209602_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_002479305.1|1209726_1210083_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	49.5	3.8e-21
WP_002459658.1|1210225_1210549_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	37.7	8.3e-07
WP_002479306.1|1210601_1211141_-	nitroreductase	NA	NA	NA	NA	NA
WP_002459660.1|1211203_1211935_-	type I 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_002459661.1|1212077_1212500_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002479307.1|1212807_1213317_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002479308.1|1213542_1214127_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.3	9.7e-30
WP_002459664.1|1214362_1214605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459665.1|1214596_1214800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459666.1|1215247_1215436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479309.1|1215682_1216246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459669.1|1216667_1216901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459670.1|1217107_1217848_+	hypothetical protein	NA	A0A2H4IZ42	uncultured_Caudovirales_phage	39.5	1.6e-40
WP_002479310.1|1217938_1218223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459672.1|1218259_1218478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479312.1|1219038_1219458_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	59.8	2.2e-36
>prophage 98
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1225627	1226581	2660394		Indivirus(100.0%)	1	NA	NA
WP_002459680.1|1225627_1226581_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.0	1.1e-11
>prophage 99
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1232130	1238287	2660394		Staphylococcus_phage(33.33%)	6	NA	NA
WP_002479322.1|1232130_1232595_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	94.2	2.9e-77
WP_002479323.1|1232616_1234992_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.1	5.1e-93
WP_002479324.1|1235032_1235773_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002459689.1|1235919_1236153_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_002479325.1|1236222_1236684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459691.1|1236973_1238287_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	81.3	4.6e-197
>prophage 100
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1247016	1251962	2660394		Streptococcus_phage(40.0%)	5	NA	NA
WP_002459699.1|1247016_1247604_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	1.3e-53
WP_002479330.1|1247962_1248907_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.3	5.4e-54
WP_002459701.1|1248952_1249960_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.8	3.7e-53
WP_002459702.1|1249956_1250868_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	35.3	1.7e-09
WP_002479331.1|1251023_1251962_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	50.3	1.3e-84
>prophage 101
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1256108	1258943	2660394		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002479335.1|1256108_1258943_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.8	0.0e+00
>prophage 102
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1268107	1276370	2660394		Streptococcus_phage(40.0%)	8	NA	NA
WP_002479341.1|1268107_1268887_-	autolysin	NA	X4YES5	Lactococcus_phage	27.9	1.4e-07
WP_002479342.1|1269303_1269876_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002479343.1|1269934_1270609_-	ComF family protein	NA	NA	NA	NA	NA
WP_002479344.1|1270571_1271897_-	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	31.2	8.6e-42
WP_002459719.1|1271959_1272826_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	39.4	1.9e-13
WP_002479345.1|1273223_1273865_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.0	1.4e-34
WP_002479346.1|1273917_1274976_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002459722.1|1275296_1276370_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.1	8.6e-16
>prophage 103
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1286269	1316282	2660394		uncultured_Caudovirales_phage(38.89%)	23	NA	NA
WP_002479350.1|1286269_1287052_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.7	1.5e-14
WP_002479351.1|1287048_1288002_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
WP_002492143.1|1287988_1288966_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
WP_002459737.1|1289525_1290560_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002459738.1|1290676_1291459_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.2	1.5e-14
WP_002479353.1|1291455_1292415_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
WP_002459740.1|1292395_1293373_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|1293741_1294710_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|1294949_1297055_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|1297017_1297416_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_014533353.1|1298289_1299159_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|1299171_1299672_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_037553882.1|1299956_1301462_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002479357.1|1301789_1302704_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002479359.1|1303134_1303665_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|1303902_1304958_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
WP_002459752.1|1305080_1306595_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.0	1.5e-69
WP_002479360.1|1306875_1308390_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_002459754.1|1308386_1309355_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	3.3e-22
WP_002459755.1|1309571_1311353_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.1	4.5e-78
WP_002479361.1|1311366_1313250_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	1.3e-54
WP_002479362.1|1313361_1314177_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_002479363.1|1314344_1316282_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	37.5	1.2e-105
>prophage 104
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1319480	1326101	2660394		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|1319480_1320632_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|1320615_1321212_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002459764.1|1321547_1322219_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
WP_002459765.1|1322220_1322640_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|1322639_1323356_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002459767.1|1323454_1324045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479367.1|1324085_1325108_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	4.2e-60
WP_002479368.1|1325264_1326101_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
>prophage 105
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1336327	1337710	2660394		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_002479375.1|1336327_1337710_-	deoxyribodipyrimidine photo-lyase	NA	F2Y1K1	Organic_Lake_phycodnavirus	30.1	5.1e-45
>prophage 106
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1345949	1346516	2660394		Enterococcus_phage(100.0%)	1	NA	NA
WP_002479382.1|1345949_1346516_+	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	36.0	2.0e-19
>prophage 107
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1353683	1354151	2660394		Pandoravirus(100.0%)	1	NA	NA
WP_002459798.1|1353683_1354151_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	40.3	1.0e-13
>prophage 108
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1364433	1365195	2660394		Planktothrix_phage(100.0%)	1	NA	NA
WP_002479391.1|1364433_1365195_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	1.0e-34
>prophage 109
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1368717	1369767	2660394		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_002479393.1|1368717_1369767_-	alpha/beta hydrolase	NA	A0A0G2Y6Q1	Acanthamoeba_polyphaga_mimivirus	26.3	2.0e-17
>prophage 110
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1374859	1376904	2660394		Planktothrix_phage(50.0%)	2	NA	NA
WP_012990953.1|1374859_1375657_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	3.3e-20
WP_002479397.1|1376070_1376904_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	38.0	3.8e-43
>prophage 111
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1383721	1387773	2660394		Bacillus_phage(50.0%)	3	NA	NA
WP_002479400.1|1383721_1385449_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	40.8	5.9e-107
WP_002479401.1|1385742_1387041_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002459827.1|1387374_1387773_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.2	2.7e-15
>prophage 112
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1392959	1397468	2660394		Catovirus(50.0%)	5	NA	NA
WP_002479403.1|1392959_1393985_+	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	32.4	3.8e-29
WP_002479404.1|1394130_1394901_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_002479405.1|1395101_1395848_+	membrane protein	NA	NA	NA	NA	NA
WP_002459837.1|1395997_1396645_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002479406.1|1396814_1397468_+	metal ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.5	1.6e-12
>prophage 113
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1407770	1408328	2660394	integrase	Streptococcus_phage(100.0%)	1	1402755:1402768	1408936:1408949
1402755:1402768	attL	TAATAATAATCAAT	NA	NA	NA	NA
WP_002479410.1|1407770_1408328_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	32.6	1.2e-21
WP_002479410.1|1407770_1408328_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	32.6	1.2e-21
1408936:1408949	attR	ATTGATTATTATTA	NA	NA	NA	NA
>prophage 114
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1412108	1412891	2660394		Mycobacterium_phage(100.0%)	1	NA	NA
WP_002479414.1|1412108_1412891_-	alpha/beta hydrolase	NA	A0A291AV30	Mycobacterium_phage	33.0	5.3e-07
>prophage 115
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1424492	1432273	2660394		Tupanvirus(33.33%)	8	NA	NA
WP_002479422.1|1424492_1425503_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	6.8e-31
WP_002479423.1|1426065_1426572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002479424.1|1426670_1427969_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.2	3.3e-22
WP_002459873.1|1428034_1428514_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012990957.1|1428699_1429248_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002459875.1|1429430_1430369_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_002493021.1|1430520_1430946_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479426.1|1430950_1432273_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	48.2	7.2e-105
>prophage 116
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1444761	1445430	2660394		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_002479436.1|1444761_1445430_-	uracil-DNA glycosylase	NA	U5U481	Elephant_endotheliotropic_herpesvirus	43.2	2.6e-42
>prophage 117
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1450274	1451687	2660394		Burkholderia_virus(100.0%)	1	NA	NA
WP_002459902.1|1450274_1451687_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	34.5	1.5e-60
>prophage 118
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1471390	1472065	2660394		Enterococcus_phage(100.0%)	1	NA	NA
WP_002479451.1|1471390_1472065_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	34.6	2.4e-24
>prophage 119
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1483701	1484892	2660394		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_002479459.1|1483701_1484892_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.4	3.7e-44
>prophage 120
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1488145	1499249	2660394		Streptococcus_phage(33.33%)	6	NA	NA
WP_002479461.1|1488145_1490227_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.7	3.9e-65
WP_001137495.1|1490346_1490817_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002459933.1|1490887_1491301_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_002479463.1|1491390_1491651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459935.1|1491912_1495536_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.5	1.2e-66
WP_002459936.1|1495694_1499249_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	22.9	1.0e-49
>prophage 121
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1503049	1507870	2660394	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_002459942.1|1503049_1503598_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.9	4.5e-13
WP_002459943.1|1503615_1503810_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_002459944.1|1503903_1504047_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002479466.1|1504143_1504686_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002459946.1|1504796_1505324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002459947.1|1505323_1506070_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_012991025.1|1506072_1506468_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_002479468.1|1506469_1507870_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.0e-53
>prophage 122
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1513338	1515798	2660394	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_002459954.1|1513338_1515798_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.0	8.9e-133
>prophage 123
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1521004	1522387	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_014533365.1|1521004_1522387_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	26.0	2.1e-22
>prophage 124
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1534669	1544903	2660394	tRNA	Tupanvirus(16.67%)	9	NA	NA
WP_002479499.1|1534669_1536157_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	39.4	7.1e-93
WP_002479498.1|1536681_1537161_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_002479497.1|1537161_1537527_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_002479496.1|1537504_1538308_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	31.5	2.7e-22
WP_002479495.1|1538529_1539462_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.0	2.9e-108
WP_002461457.1|1539638_1540523_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002461458.1|1540703_1542791_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.3e-112
WP_002461459.1|1543068_1543608_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	31.5	3.1e-14
WP_002479494.1|1543610_1544903_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	M1I2W1	Paramecium_bursaria_Chlorella_virus	22.7	3.3e-06
>prophage 125
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1554190	1556664	2660394		Hokovirus(50.0%)	2	NA	NA
WP_002479488.1|1554190_1555156_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.8	1.4e-46
WP_002479487.1|1555308_1556664_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	36.1	1.1e-31
>prophage 126
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1562314	1565612	2660394	tRNA	Hokovirus(33.33%)	3	NA	NA
WP_002479482.1|1562314_1564288_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.3	6.3e-97
WP_002479481.1|1564516_1565362_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	43.2	1.6e-49
WP_002479480.1|1565363_1565612_-	GIY-YIG nuclease family protein	NA	S6DF82	Invertebrate_iridovirus	44.4	4.4e-08
>prophage 127
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1569170	1569788	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002461493.1|1569170_1569788_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.7	6.0e-46
>prophage 128
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1578279	1579596	2660394	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_002479474.1|1578279_1579596_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.4	4.6e-43
>prophage 129
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1586537	1588268	2660394		Streptococcus_virus(100.0%)	1	NA	NA
WP_002461173.1|1586537_1588268_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	39.6	9.9e-54
>prophage 130
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1604213	1614604	2660394		Bacillus_phage(40.0%)	8	NA	NA
WP_002479270.1|1604213_1605185_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	44.6	4.1e-25
WP_002479269.1|1605991_1606831_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_002479268.1|1606862_1607522_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002479267.1|1607524_1608547_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	2.0e-30
WP_002461152.1|1608751_1610494_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	6.9e-39
WP_002479266.1|1610490_1612272_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.4	5.2e-26
WP_002479265.1|1612555_1613701_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_012991034.1|1613707_1614604_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	42.1	5.3e-51
>prophage 131
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1628267	1631404	2660394		Hokovirus(50.0%)	2	NA	NA
WP_002479253.1|1628267_1629809_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	2.8e-23
WP_002479252.1|1629937_1631404_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	1.4e-93
>prophage 132
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1641189	1642713	2660394		Enterococcus_phage(100.0%)	1	NA	NA
WP_002461113.1|1641189_1642713_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	34.5	7.9e-39
>prophage 133
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1649949	1657448	2660394		uncultured_Caudovirales_phage(40.0%)	9	NA	NA
WP_002461102.1|1649949_1650459_-	single-stranded DNA-binding protein	NA	A0A2H4JCF2	uncultured_Caudovirales_phage	79.9	3.8e-62
WP_002461101.1|1650480_1650777_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002479241.1|1651094_1651880_+	lysozyme	NA	A0A291I9H5	Lactobacillus_phage	45.6	6.1e-35
WP_002479240.1|1651941_1652133_+	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	78.3	3.7e-23
WP_002479239.1|1652372_1653470_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002479238.1|1653469_1653685_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002479237.1|1653702_1654584_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_002479236.1|1654792_1655620_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	38.1	6.4e-11
WP_002479235.1|1656353_1657448_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.2	5.3e-13
>prophage 134
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1668450	1677715	2660394		Bacillus_phage(50.0%)	10	NA	NA
WP_002479228.1|1668450_1669146_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	2.7e-34
WP_002479227.1|1669142_1670264_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002461082.1|1670431_1670848_+	VOC family protein	NA	NA	NA	NA	NA
WP_002479226.1|1671094_1671343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002479225.1|1671379_1672282_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.7	6.8e-14
WP_002479224.1|1672304_1673054_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002461078.1|1673046_1673961_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.2	4.7e-31
WP_002479223.1|1674051_1674723_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002479222.1|1675001_1676279_+	MFS transporter	NA	NA	NA	NA	NA
WP_002479221.1|1676299_1677715_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	26.2	9.3e-26
>prophage 135
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1680882	1681446	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002479217.1|1680882_1681446_-	GNAT family N-acetyltransferase	NA	D0R097	Streptococcus_phage	22.7	2.7e-05
>prophage 136
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1685772	1686531	2660394		Planktothrix_phage(100.0%)	1	NA	NA
WP_002479214.1|1685772_1686531_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	4.5e-35
>prophage 137
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1690825	1691608	2660394		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_002479212.1|1690825_1691608_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.7	3.4e-22
>prophage 138
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1698080	1698920	2660394		Gordonia_phage(100.0%)	1	NA	NA
WP_002461047.1|1698080_1698920_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	31.4	3.0e-08
>prophage 139
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1708861	1716297	2660394	tRNA	Bacillus_virus(66.67%)	4	NA	NA
WP_002461035.1|1708861_1710796_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	45.4	5.7e-143
WP_002479199.1|1710832_1713517_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	36.3	7.2e-120
WP_002461032.1|1713673_1714492_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_002479198.1|1715013_1716297_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.5	8.5e-87
>prophage 140
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1722432	1728899	2660394		Bacillus_phage(50.0%)	4	NA	NA
WP_002461019.1|1722432_1723830_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	49.0	5.8e-113
WP_002461018.1|1724115_1725399_+	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	34.6	2.3e-68
WP_002479194.1|1726361_1727063_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.8	1.7e-41
WP_150861642.1|1727075_1728899_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	30.5	6.1e-30
>prophage 141
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1736494	1737295	2660394		Bacteriophage(100.0%)	1	NA	NA
WP_150861644.1|1736494_1737295_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	36.3	1.2e-38
>prophage 142
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1741036	1742026	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002479185.1|1741036_1742026_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	54.4	2.3e-84
>prophage 143
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1757174	1758050	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_014533183.1|1757174_1758050_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.7	1.8e-24
>prophage 144
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1769286	1776468	2660394		Tupanvirus(100.0%)	1	NA	NA
WP_012990658.1|1769286_1776468_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	27.3	3.4e-148
>prophage 145
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1791819	1792518	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002491992.1|1791819_1792518_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.1	3.5e-18
>prophage 146
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1797138	1799160	2660394		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002479143.1|1797138_1799160_+	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.7	8.0e-31
>prophage 147
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1810855	1816572	2660394		uncultured_Caudovirales_phage(66.67%)	6	NA	NA
WP_002460918.1|1810855_1811830_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	25.7	3.3e-14
WP_002460916.1|1811810_1812590_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.0	2.7e-11
WP_002479133.1|1812586_1813309_+	class B sortase	NA	NA	NA	NA	NA
WP_002460913.1|1813326_1813650_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_002479132.1|1813723_1815220_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_002479131.1|1815573_1816572_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.7	7.5e-14
>prophage 148
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1822134	1823253	2660394		Planktothrix_phage(100.0%)	1	NA	NA
WP_002479126.1|1822134_1823253_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.3	1.3e-19
>prophage 149
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1829939	1832517	2660394		Lactococcus_phage(50.0%)	3	NA	NA
WP_002460886.1|1829939_1830518_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	38.1	4.2e-25
WP_002479121.1|1830789_1831836_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002479120.1|1831836_1832517_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.5	3.5e-39
>prophage 150
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1837684	1845968	2660394		Bacillus_virus(33.33%)	8	NA	NA
WP_002479113.1|1837684_1838722_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	8.9e-26
WP_002479112.1|1838726_1839749_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002479111.1|1839750_1841409_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002479110.1|1841450_1842065_+	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	27.5	8.7e-13
WP_080513633.1|1842500_1843232_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479108.1|1843228_1844179_+	sugar kinase	NA	NA	NA	NA	NA
WP_002479107.1|1844186_1844810_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_002479106.1|1844822_1845968_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	34.8	7.2e-61
>prophage 151
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1849108	1851025	2660394	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_002479104.1|1849108_1851025_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	40.5	5.5e-146
>prophage 152
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1855755	1858368	2660394		Bacillus_virus(100.0%)	1	NA	NA
WP_002479099.1|1855755_1858368_+	AAA family ATPase	NA	G3MAX6	Bacillus_virus	36.2	1.7e-41
>prophage 153
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1865043	1866601	2660394		Planktothrix_phage(50.0%)	2	NA	NA
WP_002479095.1|1865043_1865859_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.4e-10
WP_002479094.1|1865851_1866601_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	2.4e-09
>prophage 154
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1872706	1873387	2660394		Tupanvirus(100.0%)	1	NA	NA
WP_002479091.1|1872706_1873387_+	type 1 glutamine amidotransferase	NA	A0A2K9L2L9	Tupanvirus	29.0	1.7e-09
>prophage 155
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1881059	1882295	2660394		Stx2-converting_phage(100.0%)	1	NA	NA
WP_002479086.1|1881059_1882295_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	29.0	5.4e-14
>prophage 156
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1888448	1893202	2660394		Staphylococcus_phage(66.67%)	4	NA	NA
WP_002479083.1|1888448_1890695_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.8e-185
WP_002479082.1|1890716_1891472_+	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
WP_002460816.1|1891595_1891913_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	52.9	8.1e-23
WP_002479081.1|1891909_1893202_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	68.9	1.0e-159
>prophage 157
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1896275	1896476	2660394		Lactococcus_phage(100.0%)	1	NA	NA
WP_002479078.1|1896275_1896476_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	68.3	1.5e-19
>prophage 158
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1909922	1910594	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002460794.1|1909922_1910594_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.3e-25
>prophage 159
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1919446	1920773	2660394		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_002479059.1|1919446_1920163_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.5	1.4e-14
WP_002460781.1|1920149_1920773_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	26.4	2.9e-08
>prophage 160
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1924208	1924904	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002479058.1|1924208_1924904_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.9	5.2e-38
>prophage 161
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1942349	1945382	2660394		Lactobacillus_phage(100.0%)	1	NA	NA
WP_002479043.1|1942349_1945382_-	NADH-dependent flavin oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	55.9	8.5e-194
>prophage 162
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1950210	1952599	2660394		Erysipelothrix_phage(50.0%)	2	NA	NA
WP_002479038.1|1950210_1951563_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.5	2.0e-30
WP_002479037.1|1951651_1952599_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	E3SJ83	Synechococcus_phage	24.8	9.6e-11
>prophage 163
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1975323	1978035	2660394		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_002479020.1|1975323_1976346_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	27.3	4.7e-11
WP_002479019.1|1976357_1977248_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_002479018.1|1977237_1978035_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	48.9	4.0e-42
>prophage 164
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	1982119	1983736	2660394		Vibrio_phage(100.0%)	1	NA	NA
WP_002479014.1|1982119_1983736_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.8	1.6e-21
>prophage 165
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2003424	2004405	2660394		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002479000.1|2003424_2004405_-	choloylglycine hydrolase family protein	NA	M1H8K9	Paramecium_bursaria_Chlorella_virus	27.4	2.2e-26
>prophage 166
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2023356	2025363	2660394		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_002478985.1|2023356_2025363_-	amidase domain-containing protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.2	2.8e-12
>prophage 167
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2030091	2034167	2660394	integrase	Clostridium_phage(50.0%)	4	2021107:2021121	2036071:2036085
2021107:2021121	attL	AACAATTTGAGAAAC	NA	NA	NA	NA
WP_002478483.1|2030091_2031195_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	30.6	1.8e-13
WP_002478484.1|2031205_2033278_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002478485.1|2033286_2033652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478486.1|2033753_2034167_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	52.6	4.0e-30
2036071:2036085	attR	GTTTCTCAAATTGTT	NA	NA	NA	NA
>prophage 168
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2040155	2051459	2660394		Catovirus(28.57%)	12	NA	NA
WP_002478495.1|2040155_2041295_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	50.5	4.6e-108
WP_002478496.1|2041469_2042312_+	hypothetical protein	NA	A0A2H4IZ42	uncultured_Caudovirales_phage	38.9	4.7e-33
WP_002478497.1|2042343_2042970_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_002478498.1|2043213_2043315_+	DUF2648 domain-containing protein	NA	NA	NA	NA	NA
WP_002460638.1|2043581_2044244_+	capsular polysaccharide biosynthesis protein CapA	NA	NA	NA	NA	NA
WP_002478499.1|2044255_2044951_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	33.7	4.6e-26
WP_002460634.1|2044951_2045719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478500.1|2045753_2047553_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	30.1	7.9e-30
WP_002478501.1|2047563_2048586_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI8	Catovirus	35.0	8.2e-40
WP_002478502.1|2048597_2049707_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002460630.1|2049711_2050839_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.3	2.0e-127
WP_150861647.1|2050835_2051459_+	CatB-related O-acetyltransferase	NA	A0A1V0SJ47	Klosneuvirus	34.9	7.0e-18
>prophage 169
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2057772	2060226	2660394		Bacillus_phage(50.0%)	2	NA	NA
WP_002478509.1|2057772_2059044_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	1.8e-20
WP_002478510.1|2059086_2060226_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.6	3.8e-22
>prophage 170
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2064083	2064833	2660394		Planktothrix_phage(100.0%)	1	NA	NA
WP_002478514.1|2064083_2064833_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	5.6e-30
>prophage 171
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2090795	2091527	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002478529.1|2090795_2091527_+	phosphoadenylyl-sulfate reductase	NA	A0A109Z8C1	Bacillus_phage	24.3	1.7e-07
>prophage 172
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2097608	2098787	2660394		Moumouvirus(100.0%)	1	NA	NA
WP_002478534.1|2097608_2098787_+	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	31.2	1.3e-49
>prophage 173
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2102285	2104671	2660394		Enterococcus_phage(100.0%)	2	NA	NA
WP_002478538.1|2102285_2104133_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.1	6.5e-237
WP_150861650.1|2104134_2104671_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	45.3	6.0e-34
>prophage 174
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2111430	2124121	2660394	holin	Klosneuvirus(25.0%)	9	NA	NA
WP_002478544.1|2111430_2113137_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.8	2.0e-59
WP_002478545.1|2113384_2114563_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002460576.1|2114701_2114971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478546.1|2114960_2115410_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002478547.1|2116046_2117639_+	acyl--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	34.5	1.4e-75
WP_002478548.1|2117887_2120512_+	pyruvate, phosphate dikinase	NA	A0A2D2W2B1	Stenotrophomonas_phage	42.1	3.6e-92
WP_002478549.1|2120516_2121332_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002478550.1|2121637_2123137_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_002460569.1|2123416_2124121_-	GntR family transcriptional regulator	NA	A0A291LID1	Streptomyces_phage	42.4	1.2e-05
>prophage 175
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2132935	2133826	2660394		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002478556.1|2132935_2133826_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.4e-06
>prophage 176
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2137106	2141241	2660394		Klosneuvirus(50.0%)	3	NA	NA
WP_002478560.1|2137106_2138444_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.2	1.4e-18
WP_150861651.1|2138755_2140117_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002478562.1|2140116_2141241_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.0	1.7e-06
>prophage 177
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2159304	2160009	2660394		Tetraselmis_virus(100.0%)	1	NA	NA
WP_002478573.1|2159304_2160009_-	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2P0VP75	Tetraselmis_virus	28.6	8.7e-09
>prophage 178
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2172676	2181346	2660394		Staphylococcus_phage(25.0%)	6	NA	NA
WP_002460510.1|2172676_2173378_+	transglycosylase SLT domain-containing protein	NA	Q4Z8Z7	Staphylococcus_phage	43.2	1.5e-32
WP_012990709.1|2173678_2175487_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	32.3	6.7e-37
WP_002478583.1|2176124_2177291_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002478584.1|2177307_2178306_+	D-lactate dehydrogenase	NA	M1HFV8	Paramecium_bursaria_Chlorella_virus	29.9	1.4e-31
WP_002478585.1|2178677_2178884_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002478586.1|2178958_2181346_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	39.9	6.4e-128
>prophage 179
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2185374	2186313	2660394		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_002478589.1|2185374_2186313_-	NAD-dependent epimerase/dehydratase family protein	NA	E3T4Y8	Cafeteria_roenbergensis_virus	37.1	2.0e-48
>prophage 180
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2193216	2196607	2660394		Streptococcus_phage(50.0%)	6	NA	NA
WP_002478594.1|2193216_2193738_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	45.1	6.9e-27
WP_002460486.1|2193817_2193949_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002478595.1|2194010_2194142_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002460483.1|2194191_2194323_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002460481.1|2194793_2195879_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002460479.1|2195875_2196607_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	8.7e-28
>prophage 181
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2206661	2211294	2660394		Acanthamoeba_polyphaga_mimivirus(50.0%)	5	NA	NA
WP_002478604.1|2206661_2207717_-	zinc-dependent alcohol dehydrogenase family protein	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	28.6	2.6e-12
WP_002478605.1|2207929_2208334_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_002460463.1|2208342_2208702_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002478606.1|2209058_2210024_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002478607.1|2210322_2211294_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	22.8	1.7e-10
>prophage 182
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2235550	2237223	2660394	transposase	Lactococcus_phage(50.0%)	2	NA	NA
WP_002478621.1|2235550_2236033_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.1	2.9e-19
WP_002460442.1|2236230_2237223_-	D-lactate dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	31.7	1.1e-38
>prophage 183
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2270840	2274505	2660394		Bacillus_phage(50.0%)	4	NA	NA
WP_002460395.1|2270840_2271707_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.9	4.1e-77
WP_141760435.1|2272153_2272426_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_002478646.1|2272495_2272696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478647.1|2272864_2274505_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	38.3	1.2e-93
>prophage 184
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2278892	2279588	2660394		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002478651.1|2278892_2279588_+	SDR family oxidoreductase	NA	A0A0K0KVL6	Prochlorococcus_phage	28.0	3.6e-07
>prophage 185
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2289477	2293696	2660394		Pandoravirus(50.0%)	4	NA	NA
WP_002478657.1|2289477_2290758_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	A0A0B5JD48	Pandoravirus	26.7	5.6e-14
WP_002478658.1|2291287_2292118_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002460370.1|2292114_2292921_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_002460368.1|2292922_2293696_-	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	8.4e-13
>prophage 186
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2301937	2305323	2660394		Bacillus_phage(100.0%)	3	NA	NA
WP_002478663.1|2301937_2302600_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	35.7	4.3e-18
WP_002478664.1|2302592_2303369_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_014533223.1|2303859_2305323_-	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	21.8	4.8e-09
>prophage 187
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2310063	2312753	2660394		Tupanvirus(50.0%)	2	NA	NA
WP_002492437.1|2310063_2311116_-	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.2	5.3e-10
WP_002478670.1|2311502_2312753_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	51.6	1.4e-20
>prophage 188
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2318773	2319085	2660394		Streptococcus_phage(100.0%)	1	NA	NA
WP_002460342.1|2318773_2319085_+	DUF4176 domain-containing protein	NA	A0A1X9I6T6	Streptococcus_phage	43.0	2.7e-15
>prophage 189
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2322566	2324321	2660394		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002460334.1|2322566_2324321_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.4	2.7e-67
>prophage 190
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2329637	2331149	2660394		Mycobacterium_phage(100.0%)	1	NA	NA
WP_012990737.1|2329637_2331149_-	serine hydrolase FLP	NA	A0A076YS03	Mycobacterium_phage	25.1	4.6e-07
>prophage 191
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2343081	2346485	2660394		Streptococcus_phage(50.0%)	4	NA	NA
WP_002478690.1|2343081_2344257_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	40.0	1.0e-49
WP_002478691.1|2344411_2344798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_002460309.1|2344957_2345824_+	cation transporter	NA	NA	NA	NA	NA
WP_002478692.1|2346059_2346485_-	hypothetical protein	NA	A0A2R3ZXP9	Staphylococcus_phage	50.6	1.2e-16
>prophage 192
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2350951	2351683	2660394		Bacillus_virus(100.0%)	1	NA	NA
WP_002460301.1|2350951_2351683_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	2.0e-24
>prophage 193
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2355527	2357671	2660394		Staphylococcus_phage(100.0%)	3	NA	NA
WP_002478701.1|2355527_2356220_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	35.5	1.2e-34
WP_002478702.1|2356216_2356978_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	44.7	5.7e-54
WP_002478703.1|2356981_2357671_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	72.3	1.2e-84
>prophage 194
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2368646	2370200	2660394		Escherichia_phage(100.0%)	1	NA	NA
WP_002460280.1|2368646_2370200_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	42.9	3.1e-22
>prophage 195
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2390835	2391468	2660394		Indivirus(100.0%)	1	NA	NA
WP_002478719.1|2390835_2391468_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	26.2	5.8e-12
>prophage 196
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2411016	2412630	2660394		Tupanvirus(100.0%)	1	NA	NA
WP_002478735.1|2411016_2412630_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.1	2.7e-53
>prophage 197
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2417442	2417973	2660394		Bacillus_phage(100.0%)	1	NA	NA
WP_002478741.1|2417442_2417973_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	55.9	1.8e-51
>prophage 198
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2422487	2425212	2660394		Staphylococcus_phage(100.0%)	2	NA	NA
WP_002478745.1|2422487_2423663_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.6	2.2e-44
WP_002478746.1|2423655_2425212_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	68.5	7.9e-204
>prophage 199
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2429823	2432914	2660394	protease	uncultured_Caudovirales_phage(33.33%)	4	NA	NA
WP_002478750.1|2429823_2430162_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.3	1.3e-05
WP_002478751.1|2430199_2431033_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002492278.1|2431165_2431570_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	46.3	1.2e-05
WP_002478752.1|2431882_2432914_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	25.2	7.0e-15
>prophage 200
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2451611	2454140	2660394		Bacillus_phage(50.0%)	3	NA	NA
WP_002460180.1|2451611_2452286_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	46.5	1.8e-51
WP_002478767.1|2452413_2453475_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002478768.1|2453471_2454140_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	7.7e-39
>prophage 201
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2457393	2462349	2660394		Salmonella_phage(50.0%)	4	NA	NA
WP_002478771.1|2457393_2458599_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.6	3.0e-33
WP_002478772.1|2459040_2459592_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002460169.1|2459724_2460372_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002478773.1|2460384_2462349_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A2H4PQR6	Staphylococcus_phage	23.3	9.6e-05
>prophage 202
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2474828	2475710	2660394		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_002478785.1|2474828_2475710_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.6	1.5e-66
>prophage 203
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2497203	2501319	2660394		Staphylococcus_virus(33.33%)	5	NA	NA
WP_002478796.1|2497203_2497977_+	autolysin	NA	Q4ZC50	Staphylococcus_virus	50.0	3.5e-35
WP_002492284.1|2498701_2499655_-	2-hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	33.5	2.7e-29
WP_002478798.1|2499723_2500038_-	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_002478799.1|2500037_2500370_-	multidrug resistance protein SMR	NA	NA	NA	NA	NA
WP_002478800.1|2500782_2501319_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	38.3	1.1e-06
>prophage 204
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2510771	2512865	2660394	protease	Cronobacter_phage(100.0%)	1	NA	NA
WP_002478809.1|2510771_2512865_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	37.9	8.7e-113
>prophage 205
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2520429	2521035	2660394		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_002460098.1|2520429_2521035_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.0	3.8e-13
>prophage 206
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2532399	2540635	2660394		Leptospira_phage(50.0%)	5	NA	NA
WP_002478824.1|2532399_2535585_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.7	2.0e-60
WP_002478825.1|2535664_2535982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478826.1|2536347_2537259_+	AEC family transporter	NA	NA	NA	NA	NA
WP_002478827.1|2537464_2538349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012990770.1|2538484_2540635_+	DNA topoisomerase III	NA	R4TFQ7	Phaeocystis_globosa_virus	25.9	5.4e-17
>prophage 207
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2557298	2558962	2660394		Bacillus_virus(50.0%)	2	NA	NA
WP_150861652.1|2557298_2558108_+	energy-coupling factor transporter ATPase	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_002478834.1|2558104_2558962_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.4	1.9e-10
>prophage 208
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2562894	2563785	2660394		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002478838.1|2562894_2563785_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	5.4e-32
>prophage 209
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2567648	2593879	2660394		Tupanvirus(80.0%)	8	NA	NA
WP_002478842.1|2567648_2574773_+	lugdunin non-ribosomal peptide synthetase LugA	NA	A0A2K9L3I8	Tupanvirus	26.1	2.9e-59
WP_150861653.1|2574762_2578983_+	AMP-binding protein	NA	A0A2K9KZV5	Tupanvirus	24.7	2.4e-53
WP_002478844.1|2579000_2587814_+	lugdunin non-ribosomal peptide synthetase LugC	NA	A0A2K9KZV5	Tupanvirus	24.2	1.8e-47
WP_002460022.1|2587810_2588497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478846.1|2588534_2590274_+	lugdunin non-ribosomal peptide synthetase LugD	NA	A0A2K9KZV5	Tupanvirus	25.3	6.4e-45
WP_002478847.1|2590281_2590935_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_002478848.1|2592187_2592847_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002478849.1|2593144_2593879_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.8	1.3e-15
>prophage 210
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2599190	2649690	2660394	holin,capsid,terminase,head,tail	Staphylococcus_phage(68.33%)	64	NA	NA
WP_002478853.1|2599190_2600573_-	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	64.0	6.9e-167
WP_002478854.1|2600629_2601553_-	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	76.1	1.7e-92
WP_002478855.1|2601608_2602220_-	helix-turn-helix domain-containing protein	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	95.6	1.1e-105
WP_002474229.1|2602391_2602619_+	hypothetical protein	NA	A0A1Q1PVU3	Staphylococcus_phage	97.3	8.1e-33
WP_002478856.1|2602646_2603600_+	hypothetical protein	NA	H9A0Q6	Staphylococcus_phage	49.2	2.5e-43
WP_002478857.1|2603596_2604364_+	hypothetical protein	NA	U3PJ35	Staphylococcus_phage	68.8	1.0e-95
WP_002478858.1|2604432_2604744_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.1	9.4e-40
WP_002478859.1|2604691_2605075_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	30.8	7.3e-10
WP_002478860.1|2605132_2605885_+	hypothetical protein	NA	S4SW96	Staphylococcus_phage	98.4	3.1e-137
WP_002478861.1|2605900_2606044_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.6e-16
WP_150861605.1|2606053_2606656_-	hypothetical protein	NA	B7T096	Staphylococcus_virus	93.4	1.5e-97
WP_002478864.1|2606883_2607063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478865.1|2607131_2607617_+	siphovirus Gp157 family protein	NA	H9A0R4	Staphylococcus_phage	76.4	1.8e-61
WP_002478866.1|2607617_2608292_+	single-stranded DNA-binding protein	NA	I6T7Q2	Staphylococcus_virus	91.0	7.1e-109
WP_150861606.1|2608288_2608726_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	70.1	8.3e-50
WP_002478868.1|2608803_2609610_+	DnaD domain protein	NA	I6SB74	Staphylococcus_virus	91.4	1.1e-100
WP_085317574.1|2609609_2609969_+	hypothetical protein	NA	A0A141VTR9	Staphylococcus_phage	82.4	1.4e-50
WP_085317572.1|2609961_2611197_+	AAA family ATPase	NA	A0A2H4J996	uncultured_Caudovirales_phage	86.9	2.2e-201
WP_002478871.1|2611193_2611421_+	hypothetical protein	NA	H9A0Z4	Staphylococcus_phage	41.5	1.2e-07
WP_002478872.1|2611410_2611650_+	DUF3269 family protein	NA	NA	NA	NA	NA
WP_002478873.1|2611659_2612067_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_014533256.1|2612063_2612378_+	hypothetical protein	NA	A0A2H4JG42	uncultured_Caudovirales_phage	83.0	4.3e-16
WP_150861607.1|2612380_2612632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150861608.1|2612638_2613061_+	DUF3310 domain-containing protein	NA	A0A2H4JE87	uncultured_Caudovirales_phage	68.2	2.3e-28
WP_150861609.1|2613783_2613936_+	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_070481527.1|2614235_2614652_+	transcriptional regulator	NA	A0A1W6JP87	Staphylococcus_phage	81.9	3.6e-63
WP_012990985.1|2614953_2615382_+	hypothetical protein	NA	A0A1P8BLJ8	Lactococcus_phage	47.2	8.4e-23
WP_150861654.1|2615368_2616649_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	88.0	1.5e-224
WP_150861610.1|2617912_2618542_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	43.6	8.8e-37
WP_014533264.1|2619179_2620130_+|head	phage head morphogenesis protein	head	A0A1W6JNS6	Staphylococcus_phage	79.7	1.7e-145
WP_002478890.1|2620661_2621267_+	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	51.7	9.2e-15
WP_002478891.1|2621284_2622205_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	89.5	5.8e-154
WP_002478892.1|2622226_2622496_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	80.9	2.3e-34
WP_002478893.1|2622497_2622827_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	80.7	6.6e-44
WP_150861611.1|2622823_2623126_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	83.0	1.4e-43
WP_002478895.1|2623127_2623487_+	hypothetical protein	NA	A0A1W6JNQ6	Staphylococcus_phage	81.0	2.6e-49
WP_002478896.1|2623486_2623876_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	80.6	7.1e-53
WP_002478897.1|2623923_2624478_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	94.0	1.5e-88
WP_002478898.1|2624538_2624898_+	hypothetical protein	NA	A0A1W6JNQ1	Staphylococcus_phage	91.6	8.3e-56
WP_002478899.1|2624942_2625287_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	95.6	3.9e-55
WP_150861612.1|2625301_2628835_+|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	67.9	1.4e-107
WP_002478901.1|2628846_2629806_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	90.3	2.3e-169
WP_002478902.1|2629816_2631052_+	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	88.5	2.6e-213
WP_002478903.1|2631052_2632927_+	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	89.6	0.0e+00
WP_150861613.1|2632940_2634098_+	DUF2479 domain-containing protein	NA	A0A1W6JNR8	Staphylococcus_phage	74.9	4.4e-167
WP_002478905.1|2634113_2634536_+	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	66.9	4.7e-50
WP_002478906.1|2634516_2634915_+	hypothetical protein	NA	A0A2H4JAU6	uncultured_Caudovirales_phage	51.5	6.0e-31
WP_002478908.1|2635390_2637100_+	CHAP domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	81.9	9.2e-262
WP_150861614.1|2637153_2639925_+	DUF2479 domain-containing protein	NA	Q4ZC48	Staphylococcus_virus	52.1	3.6e-215
WP_002478910.1|2639981_2640254_+|holin	phage holin	holin	A0A2H4JHI3	uncultured_Caudovirales_phage	85.6	2.0e-38
WP_150861615.1|2640253_2641663_+	CHAP domain-containing protein	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	84.0	1.3e-237
WP_002478912.1|2642142_2642703_+	hypothetical protein	NA	U3PBN3	Staphylococcus_phage	84.9	3.3e-91
WP_002478853.1|2642844_2644227_-	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	64.0	6.9e-167
WP_002478854.1|2644283_2645207_-	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	76.1	1.7e-92
WP_002478855.1|2645262_2645874_-	helix-turn-helix domain-containing protein	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	95.6	1.1e-105
WP_150891371.1|2646045_2646264_+	BetR domain protein	NA	A0A1Q1PVU3	Staphylococcus_phage	94.4	1.0e-29
WP_150891372.1|2646299_2646914_+	hypothetical protein	NA	H9A0Q6	Staphylococcus_phage	55.2	1.5e-49
WP_150891373.1|2646924_2647251_+	hypothetical protein	NA	U3PG28	Staphylococcus_phage	56.0	2.2e-23
WP_150891374.1|2647247_2647478_+	hypothetical protein	NA	U3PJ35	Staphylococcus_phage	74.3	3.5e-23
WP_150891375.1|2647591_2648014_+	hypothetical protein	NA	U3PJ35	Staphylococcus_phage	62.3	6.5e-44
WP_002478858.1|2648082_2648394_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.1	9.4e-40
WP_150891376.1|2648385_2648724_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	32.1	2.5e-09
WP_150891378.1|2649244_2649589_+	oxidoreductase	NA	C8CGY2	Staphylococcus_phage	97.8	9.1e-44
WP_002478861.1|2649546_2649690_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.6e-16
>prophage 211
NZ_CP041723	Staphylococcus lugdunensis strain SL29 chromosome, complete genome	2660394	2654819	2660272	2660394	terminase	Staphylococcus_phage(75.0%)	6	NA	NA
WP_002478871.1|2654819_2655047_+	hypothetical protein	NA	H9A0Z4	Staphylococcus_phage	41.5	1.2e-07
WP_002478872.1|2655036_2655276_+	DUF3269 family protein	NA	NA	NA	NA	NA
WP_002478873.1|2655285_2655693_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_150861609.1|2657406_2657559_+	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_012990985.1|2658576_2659005_+	hypothetical protein	NA	A0A1P8BLJ8	Lactococcus_phage	47.2	8.4e-23
WP_150861654.1|2658991_2660272_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	88.0	1.5e-224
