The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044284	Rhodococcus erythropolis strain X5 chromosome, complete genome	6472161	2484865	2492427	6472161		Lactobacillus_phage(16.67%)	9	NA	NA
WP_030534957.1|2484865_2485432_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.9	4.3e-06
WP_030534956.1|2485487_2486315_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_003944717.1|2486606_2486837_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.0	1.1e-21
WP_003944767.1|2486919_2487399_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	30.1	4.5e-09
WP_085989958.1|2487380_2489540_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.0	1.5e-205
WP_003944723.1|2489601_2489814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085989609.1|2489826_2490651_-	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_003944744.1|2490914_2491880_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	86.8	7.7e-157
WP_007736052.1|2491953_2492427_-	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	31.2	1.9e-12
>prophage 2
NZ_CP044284	Rhodococcus erythropolis strain X5 chromosome, complete genome	6472161	4131386	4168271	6472161	integrase,terminase,protease,capsid,transposase	uncultured_Caudovirales_phage(25.0%)	34	4131282:4131304	4140411:4140433
4131282:4131304	attL	GTTCGAGTCCCGTCGCTCACCCA	NA	NA	NA	NA
WP_151098078.1|4131386_4132577_-|integrase	site-specific integrase	integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	30.1	8.6e-33
WP_151098079.1|4132563_4133025_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_151098080.1|4133074_4133293_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_151098081.1|4133375_4133789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151098551.1|4133830_4134064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070160516.1|4134060_4135263_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_116056514.1|4135733_4135994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007733306.1|4135993_4136182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151098082.1|4136174_4136630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151098083.1|4136933_4137815_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_151098552.1|4137880_4138327_+|terminase	P27 family phage terminase small subunit	terminase	NA	NA	NA	NA
WP_151098084.1|4138323_4139823_+	hypothetical protein	NA	I7KQY6	Yersinia_phage	26.4	2.7e-07
WP_141751392.1|4139955_4140207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007733298.1|4140723_4141134_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
4140411:4140433	attR	GTTCGAGTCCCGTCGCTCACCCA	NA	NA	NA	NA
WP_030538129.1|4141850_4143098_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.4	3.9e-76
WP_007733294.1|4143708_4144917_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_030537911.1|4145430_4146861_+	amidase	NA	NA	NA	NA	NA
WP_007733292.1|4147093_4147315_-	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_007733290.1|4147460_4147934_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_007733289.1|4147930_4149280_-	dipeptidase	NA	NA	NA	NA	NA
WP_003945379.1|4149570_4150272_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003945362.1|4150330_4150729_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_030537910.1|4150739_4160051_-	type I polyketide synthase	NA	NA	NA	NA	NA
WP_030537909.1|4160470_4161187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030537908.1|4161401_4162121_-	hydrogenase expression protein HupH	NA	NA	NA	NA	NA
WP_020970031.1|4162331_4162739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003945334.1|4162735_4163116_+	DUF3817 domain-containing protein	NA	NA	NA	NA	NA
WP_003945370.1|4163178_4163787_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	29.5	1.7e-08
WP_003945332.1|4163790_4164576_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_019749149.1|4164628_4165396_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_030537907.1|4165484_4166144_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_030537906.1|4166236_4167304_-	P1 family peptidase	NA	NA	NA	NA	NA
WP_003945318.1|4167300_4167891_-	DUF2017 domain-containing protein	NA	NA	NA	NA	NA
WP_029255695.1|4167959_4168271_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
>prophage 1
NZ_CP044283	Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence	526979	213482	258775	526979	transposase,integrase	Gordonia_phage(36.36%)	34	213403:213462	259818:260919
213403:213462	attL	ATCATGATATGTGGGTGATCTGACGCATCCAGTGTCAGGCTGATCATGTCGGTTGTCGGC	NA	NA	NA	NA
WP_003943780.1|213482_214508_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A7AR08	Bacillus_phage	28.7	4.0e-10
WP_006359314.1|214504_216340_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CCU8	Gordonia_phage	30.3	5.3e-05
WP_151097107.1|217108_217300_+|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	77.8	2.0e-24
WP_151097108.1|217601_217949_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_151097110.1|217945_218584_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_151097376.1|218680_219913_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_151097112.1|220866_221658_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_151097379.1|222072_222399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097114.1|222832_223720_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_151097116.1|224585_224957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097118.1|225321_225627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097120.1|225765_225945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_116058469.1|228258_229403_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	35.5	1.8e-32
WP_151097122.1|230216_230642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099699101.1|231076_232018_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003941073.1|232126_232438_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_151097124.1|232530_232836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007732099.1|234812_236093_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	39.1	6.0e-32
WP_151097126.1|236460_237303_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_075835818.1|237299_237515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097128.1|237671_239447_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	36.9	3.3e-52
WP_051649789.1|239587_242269_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.6	3.0e-150
WP_003943355.1|242471_243665_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_003943380.1|243874_244849_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_070160344.1|245696_245945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070160346.1|246031_246391_-	Lsr2 family protein	NA	A0A160DEV0	Gordonia_phage	43.7	1.2e-17
WP_075836239.1|246520_248155_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_151097130.1|248454_249909_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019749850.1|250024_251137_+	NDMA-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	32.2	1.7e-38
WP_151097132.1|251248_252148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019749848.1|252482_253259_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_151097134.1|253251_255186_+	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	29.8	4.2e-53
WP_151097136.1|255224_256226_+	acryloyl-CoA reductase	NA	NA	NA	NA	NA
WP_006359314.1|256939_258775_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CCU8	Gordonia_phage	30.3	5.3e-05
259818:260919	attR	GCCGACAACCGACATGATCAGCCTGACACTGGATGCGTCAGATCACCCACATATCATGATTTTCTTCGGGGCGGAGCTCGACCGCCAGCACAAGAGATGACCGCGTTCATCGATGCCAATCGCGGCGATGTCATCGCGGGTCGGAGGCTTGGGGTCGAGCGTATCTGCAAGGCCTTGCAGATACCTCCGAGCAGCTACTACGCCACCAAAAGCCGACCGCCGTCAGCTAGATCGGTCTCCGATAGCCGGTTGCGGCCGGCGCTACGGGGGTTGTGGGAGGAGAATTACCAGGTATATGGGGTGCGGAAGCTGTGGAAAGCAGCCCGAAGATCGGGCATCGATGTCGGCCGTGACCAGGTCGCGCGGCTGATGCGTGCCGAGCAGATCGCTGGTGTGCGGCGAGGGAAGAAGGTGCGTACCACCCGAGCAACGGCCGGGGCGGATCGGCACCCCGATCTGGTTGGGCGGGATTTCACTGCGACTGAGCCGAACCAACTGTGGGTCACCGACCTCACCCACGTCCCGACCTGGGCGGGAATGGGCTACGTCTGCTTCATCACCGACGCTTACTCTCGGATGATCGTGGGCTGGCGCGTCGCGGCAAACATGCGCACCCAGGTAGTGCTCGACGCCATCGAGATGGCCCGCTTCAGTCGCGGCACACGGTTGACCGGGCTGCGCTGCCACAGCGATGCGGGCAGTCAATTCACCTCGGTCCGCTACGGCGAACGGCTCGCCGAACTCGGTGCAATACCGTCGATCGGGACCGTGGGCGATTCCTACGATAATGCTCTCGCCGAGAGCGTGAACGGCTACTACAAGTACGAACTCATCTACGGCCCAACGCATCCTGGTCCATGGCGCAGCATCGACGACCTGGAACTGGCGACACTGTCGTGGGTGCACTGGCACAATCACAGGCGGCTGCATGGTCACTGCGGCGACATCCCGCCAGCAGAGTACGAGAAGACGTTCTACGCTACTGAGCAGGGTGAGCAGGCCTTGGTTGAAATCAAATAGCCAGAGCCTCCATCAGACCCAGGGCGATTCAGCCGCCCGTACGTCATGATCTGGCTCTCGCAGGGCTACGCGACCGACTACG	NA	NA	NA	NA
>prophage 2
NZ_CP044283	Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence	526979	400764	447180	526979	transposase,integrase	Corynebacterium_phage(25.0%)	37	412469:412484	447686:447701
WP_030538129.1|400764_402012_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.4	3.9e-76
WP_030537937.1|402400_402715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007733691.1|402711_403494_-	AAA family ATPase	NA	Q8JL10	Natrialba_phage	25.1	7.9e-11
WP_007733695.1|407845_408103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097291.1|410231_411179_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA	NA
WP_128638091.1|411386_411674_-	RES domain-containing protein	NA	NA	NA	NA	NA
WP_151097294.1|411849_412032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_030537933.1|412060_412543_-	polyketide cyclase	NA	NA	NA	NA	NA
412469:412484	attL	GTCGCAGAGGACCGCG	NA	NA	NA	NA
WP_151097296.1|412719_413187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151097298.1|413866_414661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151097300.1|414976_416011_-	diiron oxygenase	NA	NA	NA	NA	NA
WP_030538129.1|416199_417447_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.4	3.9e-76
WP_151097302.1|417601_417808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151097304.1|418142_418355_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_003943396.1|418351_418708_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2K9V2U7	Faecalibacterium_phage	34.2	6.6e-05
WP_007728194.1|418905_419295_-	helix-turn-helix transcriptional regulator	NA	G9FH51	Rhodococcus_phage	29.4	3.2e-05
WP_149357472.1|420367_420820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_116058469.1|421565_422710_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	35.5	1.8e-32
WP_024488231.1|423169_423610_-	hypothetical protein	NA	G9FGX7	Rhodococcus_phage	31.0	1.1e-06
WP_021343300.1|424337_424583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127160070.1|424812_425361_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_151097306.1|425457_425700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097308.1|425887_426121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097310.1|428847_429885_-	methionine synthase	NA	NA	NA	NA	NA
WP_151097312.1|429905_430898_-	DUF1852 domain-containing protein	NA	NA	NA	NA	NA
WP_151097314.1|431023_431971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_151097316.1|433598_434255_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_151097318.1|434251_434920_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_151097320.1|435037_435271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097322.1|435288_435795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151097324.1|436176_436980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151097326.1|437252_438194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094610787.1|440201_441881_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	M4T586	Rhodobacter_phage	24.6	5.1e-07
WP_094610788.1|441885_442824_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_094610789.1|442820_444053_+	TniQ family protein	NA	NA	NA	NA	NA
WP_064075584.1|444376_445099_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
WP_064075566.1|445095_447180_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
447686:447701	attR	CGCGGTCCTCTGCGAC	NA	NA	NA	NA
>prophage 3
NZ_CP044283	Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence	526979	463610	498569	526979	transposase,integrase	Enterobacteria_phage(40.0%)	33	455994:456011	504470:504487
455994:456011	attL	CGCCGACCTCGCCGTCGC	NA	NA	NA	NA
WP_151097409.1|463610_464807_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_151097328.1|464839_465859_+	recombinase	NA	NA	NA	NA	NA
WP_151097330.1|466446_467124_-	zf-HC2 domain-containing protein	NA	NA	NA	NA	NA
WP_039868167.1|467120_467609_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_081598159.1|467672_468659_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_039868154.1|468880_469312_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_151097332.1|469372_471601_+	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_151097334.1|471858_472494_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_006898186.1|472925_473171_-	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_151097335.1|473306_475487_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_006898188.1|475608_475872_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_006898189.1|475965_476502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_151097337.1|476498_477704_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006898191.1|478283_479678_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_151097339.1|480163_480952_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_006898193.1|480980_481319_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_006898194.1|481320_482163_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_058228376.1|484015_484489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051649768.1|485122_485851_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_006898201.1|486031_486247_+	DUF2892 domain-containing protein	NA	NA	NA	NA	NA
WP_151097341.1|486269_487442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006898203.1|487442_487850_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_006898204.1|487928_488441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042925970.1|488545_489274_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_042925969.1|489285_490158_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
WP_042925967.1|490195_490543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042926436.1|491273_491900_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_081558932.1|491946_492636_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_128638085.1|493224_494421_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.5	5.2e-30
WP_151097343.1|494618_495329_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	47.3	5.1e-49
WP_006359314.1|495347_497183_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CCU8	Gordonia_phage	30.3	5.3e-05
WP_003943780.1|497179_498205_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A7AR08	Bacillus_phage	28.7	4.0e-10
WP_151097345.1|498278_498569_-|transposase	transposase	transposase	Q9ETV7	Enterobacteria_phage	48.9	2.2e-14
504470:504487	attR	GCGACGGCGAGGTCGGCG	NA	NA	NA	NA
