assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727835.1_ASM872783v1	NZ_CP044228	Lactobacillus rhamnosus strain hsryfm 1301 chromosome, complete genome	1	158773-158887	1	CRISPRCasFinder	no		cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	Orphan	GCGTTATGGGCATAAGCTAGAATGTAAG	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	NA,NA|100aa|down_1|NZ_CP044228.1_159691_159991_-,NA|151aa|down_2|NZ_CP044228.1_160013_160466_-,NA|60aa|down_3|NZ_CP044228.1_160784_160964_+,NA|74aa|down_6|NZ_CP044228.1_162878_163100_+	NA|390aa|up_9|NZ_CP044228.1_146256_147426_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|615aa|up_8|NZ_CP044228.1_147671_149516_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|265aa|up_7|NZ_CP044228.1_149768_150563_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|94aa|up_6|NZ_CP044228.1_150565_150847_-	pfam05256, UPF0223, Uncharacterized protein family (UPF0223)	NA|297aa|up_5|NZ_CP044228.1_150836_151727_-	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]	NA|468aa|up_4|NZ_CP044228.1_151972_153376_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|552aa|up_3|NZ_CP044228.1_153378_155034_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|326aa|up_2|NZ_CP044228.1_155051_156029_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|up_1|NZ_CP044228.1_156031_157144_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|272aa|up_0|NZ_CP044228.1_157404_158220_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|185aa|down_0|NZ_CP044228.1_159095_159650_+	PRK00150, def, peptide deformylase; Reviewed	NA|100aa|down_1|NZ_CP044228.1_159691_159991_-	NA	NA|151aa|down_2|NZ_CP044228.1_160013_160466_-	NA	NA|60aa|down_3|NZ_CP044228.1_160784_160964_+	NA	NA|71aa|down_4|NZ_CP044228.1_160960_161173_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|561aa|down_5|NZ_CP044228.1_161177_162860_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|74aa|down_6|NZ_CP044228.1_162878_163100_+	NA	NA|317aa|down_7|NZ_CP044228.1_163111_164062_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|406aa|down_8|NZ_CP044228.1_164190_165408_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|822aa|down_9|NZ_CP044228.1_165413_167879_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family
GCF_008727835.1_ASM872783v1	NZ_CP044228	Lactobacillus rhamnosus strain hsryfm 1301 chromosome, complete genome	2	285216-285323	2	CRISPRCasFinder	no		cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	Orphan	CGCGTTATGGGCGTAAGCTGGCACATT	27	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	NA,NA	NA|375aa|up_9|NZ_CP044228.1_277688_278813_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|100aa|up_8|NZ_CP044228.1_278941_279241_-	cd06848, GCS_H, Glycine cleavage H-protein	NA|402aa|up_7|NZ_CP044228.1_279252_280458_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|74aa|up_6|NZ_CP044228.1_280579_280801_-	pfam11184, DUF2969, Protein of unknown function (DUF2969)	NA|102aa|up_5|NZ_CP044228.1_280793_281099_-	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD	NA|57aa|up_4|NZ_CP044228.1_281107_281278_-	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta	NA|330aa|up_3|NZ_CP044228.1_281290_282280_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|79aa|up_2|NZ_CP044228.1_282344_282581_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|144aa|up_1|NZ_CP044228.1_283049_283481_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|489aa|up_0|NZ_CP044228.1_283495_284962_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|308aa|down_0|NZ_CP044228.1_285421_286345_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|510aa|down_1|NZ_CP044228.1_286356_287886_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|182aa|down_2|NZ_CP044228.1_287909_288455_-	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|163aa|down_3|NZ_CP044228.1_288441_288930_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|71aa|down_4|NZ_CP044228.1_288965_289178_-	cd18185, ATP-synt_Fo_c_ATPE, F-type proton-translocating ATPase subunit c (ATPE) and similar proteins	NA|237aa|down_5|NZ_CP044228.1_289200_289911_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|210aa|down_6|NZ_CP044228.1_290210_290840_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|411aa|down_7|NZ_CP044228.1_290880_292113_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|341aa|down_8|NZ_CP044228.1_292422_293445_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|277aa|down_9|NZ_CP044228.1_293544_294375_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
GCF_008727835.1_ASM872783v1	NZ_CP044228	Lactobacillus rhamnosus strain hsryfm 1301 chromosome, complete genome	3	2281592-2282947	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	Type II-A,Type II-B,Type II-C	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	36,36,36	3	28	2281628-2281657|2281694-2281723|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789|2281760-2281789	NZ_CP044228.1_1419384-1419355|NZ_CP044228.1_1363240-1363211|NZ_CP044228.1_430045-430074|NZ_CP044228.1_876634-876663|NZ_CP044228.1_1020470-1020499|NZ_CP044228.1_1148137-1148166|NZ_CP044228.1_1432758-1432787|NZ_CP044228.1_1651841-1651870|NZ_CP044228.1_2111677-2111706|NZ_CP044228.1_2187818-2187847|NZ_CP044228.1_2278131-2278160|NZ_CP044228.1_2484551-2484580|NZ_CP044228.1_2532795-2532824|NZ_CP044228.1_885399-885370|NZ_CP044228.1_1054329-1054300|NZ_CP044228.1_1284185-1284156|NZ_CP044228.1_1310025-1309996|NZ_CP044228.1_1368031-1368002|NZ_CP044228.1_1451389-1451360|NZ_CP044228.1_1874751-1874722|NZ_CP044228.1_2063191-2063162|NZ_CP044228.1_2106074-2106045|NZ_CP044228.1_2232315-2232286|NZ_CP044228.1_2538635-2538606|NZ_CP044228.1_2641439-2641410|NZ_CP044228.1_2764176-2764147|NZ_CP044228.1_2772958-2772929|NZ_CP044228.1_2928706-2928677	NA:NA:NA	17,20,20	20	TypeII-A,TypeII-B,TypeII-C	cas14j,DEDDh,csa3,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	NA,NA|112aa|down_0|NZ_CP044228.1_2283052_2283388_+,NA|366aa|down_1|NZ_CP044228.1_2283702_2284800_+	NA|435aa|up_9|NZ_CP044228.1_2266154_2267459_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|475aa|up_8|NZ_CP044228.1_2267690_2269115_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|up_7|NZ_CP044228.1_2269111_2270125_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|581aa|up_6|NZ_CP044228.1_2270121_2271864_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_5|NZ_CP044228.1_2271844_2273572_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|499aa|up_4|NZ_CP044228.1_2277284_2278781_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	cas9|246aa|up_3|NZ_CP044228.1_2278781_2279519_+	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP044228.1_2279705_2280611_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP044228.1_2280588_2280894_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|227aa|up_0|NZ_CP044228.1_2280890_2281571_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|112aa|down_0|NZ_CP044228.1_2283052_2283388_+	NA	NA|366aa|down_1|NZ_CP044228.1_2283702_2284800_+	NA	NA|142aa|down_2|NZ_CP044228.1_2284989_2285415_+	pfam07009, NusG_II, NusG domain II	NA|565aa|down_3|NZ_CP044228.1_2285626_2287321_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|541aa|down_4|NZ_CP044228.1_2287313_2288936_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|291aa|down_5|NZ_CP044228.1_2289067_2289940_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|612aa|down_6|NZ_CP044228.1_2290515_2292351_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|262aa|down_7|NZ_CP044228.1_2294277_2295063_+	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional	NA|215aa|down_8|NZ_CP044228.1_2295128_2295773_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|289aa|down_9|NZ_CP044228.1_2295765_2296632_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
