assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	1	264595-264693	1	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	TGTAGGAGTCCGCTCTGCGGGCGATT	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA	NA|168aa|up_9|NZ_CP044222.1_258903_259407_+	PRK00550, rpsE, 30S ribosomal protein S5; Validated	NA|61aa|up_8|NZ_CP044222.1_259410_259593_+	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|145aa|up_7|NZ_CP044222.1_259606_260041_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|441aa|up_6|NZ_CP044222.1_260041_261364_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|39aa|up_5|NZ_CP044222.1_261382_261499_+	pfam00444, Ribosomal_L36, Ribosomal protein L36	NA|119aa|up_4|NZ_CP044222.1_261629_261986_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|130aa|up_3|NZ_CP044222.1_262005_262395_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|207aa|up_2|NZ_CP044222.1_262410_263031_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|335aa|up_1|NZ_CP044222.1_263057_264062_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|132aa|up_0|NZ_CP044222.1_264101_264497_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|788aa|down_0|NZ_CP044222.1_264782_267146_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|352aa|down_1|NZ_CP044222.1_267295_268351_+	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|184aa|down_2|NZ_CP044222.1_268362_268914_+	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|201aa|down_3|NZ_CP044222.1_268910_269513_+	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|191aa|down_4|NZ_CP044222.1_269499_270072_+	pfam04351, PilP, Pilus assembly protein, PilP	NA|696aa|down_5|NZ_CP044222.1_270099_272187_+	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|166aa|down_6|NZ_CP044222.1_272221_272719_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|358aa|down_7|NZ_CP044222.1_272767_273841_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|553aa|down_8|NZ_CP044222.1_273827_275486_+	COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1485aa|down_9|NZ_CP044222.1_275682_280137_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	2	347406-352192	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Type I-E	GTGTTCCCCGCACCTGCGGGGATGAACCG,GTGTTCCCCGCACCTGCGGGGATGAACCG,GTGTTCCCCGCACCTGCGGGGATGAACCG	29,29,29	2	2	349143-349174|351766-351797	NZ_CP044222.1_1620582-1620613|NZ_CP044222.1_1622356-1622325	I-E:I-E:I-E	77,78,78	78	TypeI-E	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA	cas8e|164aa|up_9|NZ_CP044222.1_339408_339900_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	NA|394aa|up_8|NZ_CP044222.1_339942_341123_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas8e|356aa|up_7|NZ_CP044222.1_341119_342187_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|183aa|up_6|NZ_CP044222.1_342183_342732_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|387aa|up_5|NZ_CP044222.1_342728_343889_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|227aa|up_4|NZ_CP044222.1_343892_344573_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|224aa|up_3|NZ_CP044222.1_344559_345231_+	pfam08798, CRISPR_assoc, CRISPR associated protein	NA|283aa|up_2|NZ_CP044222.1_345251_346100_+	pfam04383, KilA-N, KilA-N domain	cas1|307aa|up_1|NZ_CP044222.1_346096_347017_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP044222.1_347016_347304_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|107aa|down_0|NZ_CP044222.1_352467_352788_-	pfam08808, RES, RES domain	NA|106aa|down_1|NZ_CP044222.1_352784_353102_-	pfam01845, CcdB, CcdB protein	NA|82aa|down_2|NZ_CP044222.1_353101_353347_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|449aa|down_3|NZ_CP044222.1_353416_354763_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|284aa|down_4|NZ_CP044222.1_354865_355717_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|493aa|down_5|NZ_CP044222.1_355730_357209_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|380aa|down_6|NZ_CP044222.1_357607_358747_+	cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like	NA|215aa|down_7|NZ_CP044222.1_358811_359456_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|323aa|down_8|NZ_CP044222.1_359461_360430_-	smart00797, AHS2, Allophanate hydrolase subunit 2	NA|241aa|down_9|NZ_CP044222.1_360395_361118_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	3	467000-467109	3	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	GTTCGATCCCGCATAGCTCCACCATTCCTTG	31	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|91aa|up_8|NZ_CP044222.1_454907_455180_-,NA|125aa|down_1|NZ_CP044222.1_471546_471921_+	NA|280aa|up_9|NZ_CP044222.1_454021_454861_+	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|91aa|up_8|NZ_CP044222.1_454907_455180_-	NA	NA|574aa|up_7|NZ_CP044222.1_455577_457299_+	PRK06466, PRK06466, acetolactate synthase 3 large subunit	NA|164aa|up_6|NZ_CP044222.1_457301_457793_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|293aa|up_5|NZ_CP044222.1_457943_458822_+	pfam05673, DUF815, Protein of unknown function (DUF815)	NA|607aa|up_4|NZ_CP044222.1_458801_460622_-	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|300aa|up_3|NZ_CP044222.1_460684_461584_-	PRK11716, PRK11716, HTH-type transcriptional activator IlvY	NA|339aa|up_2|NZ_CP044222.1_461739_462756_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|322aa|up_1|NZ_CP044222.1_462896_463862_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|up_0|NZ_CP044222.1_463925_464708_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|159aa|down_0|NZ_CP044222.1_471070_471547_+	pfam10675, DUF2489, Protein of unknown function (DUF2489)	NA|125aa|down_1|NZ_CP044222.1_471546_471921_+	NA	NA|874aa|down_2|NZ_CP044222.1_471926_474548_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|323aa|down_3|NZ_CP044222.1_474547_475516_-	COG2984, COG2984, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|705aa|down_4|NZ_CP044222.1_475515_477630_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|707aa|down_5|NZ_CP044222.1_477669_479790_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|483aa|down_6|NZ_CP044222.1_479838_481287_-	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|363aa|down_7|NZ_CP044222.1_481415_482504_+	pfam02405, MlaE, Permease MlaE	NA|263aa|down_8|NZ_CP044222.1_482503_483292_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|300aa|down_9|NZ_CP044222.1_483288_484188_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	4	866749-867296	4	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	GGCCGCTGGGATGTATCCAATGT	23	0	0	NA	NA	NA	7	7	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|649aa|up_4|NZ_CP044222.1_860025_861972_+,NA|365aa|up_3|NZ_CP044222.1_861907_863002_+,NA|345aa|up_2|NZ_CP044222.1_863102_864137_+,NA|154aa|down_0|NZ_CP044222.1_868273_868735_+	NA|273aa|up_9|NZ_CP044222.1_849218_850037_+	sd00045, ANK, ankyrin repeats	NA|420aa|up_8|NZ_CP044222.1_850553_851813_-	pfam13360, PQQ_2, PQQ-like domain	NA|1427aa|up_7|NZ_CP044222.1_851785_856066_-	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain	NA|657aa|up_6|NZ_CP044222.1_856622_858593_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|480aa|up_5|NZ_CP044222.1_858589_860029_+	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|649aa|up_4|NZ_CP044222.1_860025_861972_+	NA	NA|365aa|up_3|NZ_CP044222.1_861907_863002_+	NA	NA|345aa|up_2|NZ_CP044222.1_863102_864137_+	NA	NA|89aa|up_1|NZ_CP044222.1_864205_864472_+	cd14743, PAAR_CT_1, proline-alanine-alanine-arginine (PAAR) domain with C-terminal extension	NA|118aa|up_0|NZ_CP044222.1_864633_864987_+	COG3671, COG3671, Predicted membrane protein [Function unknown]	NA|154aa|down_0|NZ_CP044222.1_868273_868735_+	NA	NA|477aa|down_1|NZ_CP044222.1_868847_870278_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_2|NZ_CP044222.1_870246_871017_-	cd06904, M14_MpaA-like, Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins	NA|194aa|down_3|NZ_CP044222.1_871096_871678_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|499aa|down_4|NZ_CP044222.1_871794_873291_-	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|136aa|down_5|NZ_CP044222.1_873641_874049_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|406aa|down_6|NZ_CP044222.1_874083_875301_-	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|370aa|down_7|NZ_CP044222.1_875319_876429_-	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|500aa|down_8|NZ_CP044222.1_876428_877928_-	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional	NA|252aa|down_9|NZ_CP044222.1_878190_878946_+	PRK09990, PRK09990, DNA-binding transcriptional regulator GlcC; Provisional
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	5	1094335-1094437	5	CRISPRCasFinder	no	WYL	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Unclear	AACAACATCGCTCGGAGACCGAGCTCC	27	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|551aa|up_8|NZ_CP044222.1_1077770_1079423_+,NA|499aa|up_7|NZ_CP044222.1_1079422_1080919_+,NA	NA|219aa|up_9|NZ_CP044222.1_1076716_1077373_+	pfam18739, HEPN_Apea, Apea-like HEPN	NA|551aa|up_8|NZ_CP044222.1_1077770_1079423_+	NA	NA|499aa|up_7|NZ_CP044222.1_1079422_1080919_+	NA	NA|454aa|up_6|NZ_CP044222.1_1080982_1082344_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|559aa|up_5|NZ_CP044222.1_1082966_1084643_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|703aa|up_4|NZ_CP044222.1_1084867_1086976_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|282aa|up_3|NZ_CP044222.1_1086986_1087832_+	pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C terminal	NA|651aa|up_2|NZ_CP044222.1_1088451_1090404_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|265aa|up_1|NZ_CP044222.1_1090367_1091162_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|259aa|up_0|NZ_CP044222.1_1091412_1092189_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|2567aa|down_0|NZ_CP044222.1_1094800_1102501_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|1363aa|down_1|NZ_CP044222.1_1102497_1106586_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|414aa|down_2|NZ_CP044222.1_1107495_1108737_+	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|387aa|down_3|NZ_CP044222.1_1109117_1110278_+	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA|288aa|down_4|NZ_CP044222.1_1110274_1111138_+	cd19097, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|303aa|down_5|NZ_CP044222.1_1111134_1112043_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|252aa|down_6|NZ_CP044222.1_1112039_1112795_+	cd08930, SDR_c8, classical (c) SDR, subgroup 8	NA|243aa|down_7|NZ_CP044222.1_1112779_1113508_+	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety	NA|363aa|down_8|NZ_CP044222.1_1113504_1114593_+	TIGR03590, PseG, UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase	NA|162aa|down_9|NZ_CP044222.1_1114619_1115105_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	6	1190050-1190222	6	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	TCTGTGGGAGCCCGGTCTGTGGGAGCCCGGTCTCCGGGCGATT	43	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA	NA|489aa|up_9|NZ_CP044222.1_1178511_1179978_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|465aa|up_8|NZ_CP044222.1_1179970_1181365_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|154aa|up_7|NZ_CP044222.1_1181535_1181997_+	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins	NA|215aa|up_6|NZ_CP044222.1_1182146_1182791_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|330aa|up_5|NZ_CP044222.1_1182801_1183791_+	COG3258, COG3258, Cytochrome c [Energy production and conversion]	NA|144aa|up_4|NZ_CP044222.1_1183859_1184291_-	cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway	NA|591aa|up_3|NZ_CP044222.1_1184475_1186248_+	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional	NA|399aa|up_2|NZ_CP044222.1_1186400_1187597_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV	NA|362aa|up_1|NZ_CP044222.1_1187627_1188713_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|367aa|up_0|NZ_CP044222.1_1188735_1189836_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|154aa|down_0|NZ_CP044222.1_1190316_1190778_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|331aa|down_1|NZ_CP044222.1_1191065_1192058_+	COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]	NA|308aa|down_2|NZ_CP044222.1_1192096_1193020_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|306aa|down_3|NZ_CP044222.1_1193019_1193937_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|664aa|down_4|NZ_CP044222.1_1193933_1195925_+	pfam11992, DUF3488, Domain of unknown function (DUF3488)	NA|599aa|down_5|NZ_CP044222.1_1196018_1197815_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|268aa|down_6|NZ_CP044222.1_1197874_1198678_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|753aa|down_7|NZ_CP044222.1_1198910_1201169_-	COG3605, PtsP, Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]	NA|841aa|down_8|NZ_CP044222.1_1201413_1203936_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|190aa|down_9|NZ_CP044222.1_1203949_1204519_-	TIGR04211, hypothetical_protein, SH3 domain protein
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	7	1226796-1226887	7	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	GTAGGAGCTCGCTCCGCGAGCGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|241aa|up_2|NZ_CP044222.1_1220677_1221400_+,NA	NA|654aa|up_9|NZ_CP044222.1_1211743_1213705_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|449aa|up_8|NZ_CP044222.1_1214738_1216085_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|245aa|up_7|NZ_CP044222.1_1216084_1216819_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|169aa|up_6|NZ_CP044222.1_1216987_1217494_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|168aa|up_5|NZ_CP044222.1_1217570_1218074_+	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|436aa|up_4|NZ_CP044222.1_1218099_1219407_-	TIGR00900, multidrug_transporter, H+ Antiporter protein	NA|245aa|up_3|NZ_CP044222.1_1219915_1220650_+	pfam13795, HupE_UreJ_2, HupE / UreJ protein	NA|241aa|up_2|NZ_CP044222.1_1220677_1221400_+	NA	NA|1257aa|up_1|NZ_CP044222.1_1221518_1225289_+	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA	NA|333aa|up_0|NZ_CP044222.1_1225733_1226732_+	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]	NA|373aa|down_0|NZ_CP044222.1_1227279_1228398_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|323aa|down_1|NZ_CP044222.1_1228438_1229407_+	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|558aa|down_2|NZ_CP044222.1_1229415_1231089_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|157aa|down_3|NZ_CP044222.1_1231972_1232443_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|490aa|down_4|NZ_CP044222.1_1232603_1234073_+	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|550aa|down_5|NZ_CP044222.1_1234147_1235797_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|250aa|down_6|NZ_CP044222.1_1236138_1236888_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|310aa|down_7|NZ_CP044222.1_1236887_1237817_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|428aa|down_8|NZ_CP044222.1_1238542_1239826_+	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|289aa|down_9|NZ_CP044222.1_1239822_1240689_+	pfam05257, CHAP, CHAP domain
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	8	1256726-1261673	2,8,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Type I-F	GCTCACCGCCACGCAGGCGGCTTAGAAA,GCTCACCGCCACGCAGGCGGCTTAGAAA,GCTCACCGCCACGCAGGCGGCTTAGAAA,GCTCACCGCCACGCAGGCGGCTTAGAAA	28,28,28,28	1	1	1261614-1261645	NZ_CP044222.1_757771-757740	NA:NA:NA:NA	79,82,82,79	82	TypeI-F	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA|145aa|down_4|NZ_CP044222.1_1264383_1264818_+,NA|265aa|down_7|NZ_CP044222.1_1267216_1268011_+	NA|158aa|up_9|NZ_CP044222.1_1244831_1245305_+	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|196aa|up_8|NZ_CP044222.1_1245578_1246166_-	pfam03695, UPF0149, Uncharacterized protein family (UPF0149)	NA|239aa|up_7|NZ_CP044222.1_1246241_1246958_-	pfam08241, Methyltransf_11, Methyltransferase domain	WYL|282aa|up_6|NZ_CP044222.1_1247066_1247912_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	cas1|326aa|up_5|NZ_CP044222.1_1248081_1249059_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1132aa|up_4|NZ_CP044222.1_1249055_1252451_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|425aa|up_3|NZ_CP044222.1_1252674_1253949_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|316aa|up_2|NZ_CP044222.1_1253945_1254893_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_1|NZ_CP044222.1_1254923_1255949_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|210aa|up_0|NZ_CP044222.1_1255957_1256587_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|289aa|down_0|NZ_CP044222.1_1261741_1262608_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|104aa|down_1|NZ_CP044222.1_1262598_1262910_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|108aa|down_2|NZ_CP044222.1_1263280_1263604_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|167aa|down_3|NZ_CP044222.1_1263679_1264180_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|145aa|down_4|NZ_CP044222.1_1264383_1264818_+	NA	NA|627aa|down_5|NZ_CP044222.1_1264876_1266757_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|139aa|down_6|NZ_CP044222.1_1266772_1267189_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|265aa|down_7|NZ_CP044222.1_1267216_1268011_+	NA	NA|436aa|down_8|NZ_CP044222.1_1268115_1269423_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|1042aa|down_9|NZ_CP044222.1_1269734_1272860_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	9	1541988-1542070	9	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	GAGCGAAAAGATTGTCATAATTCG	24	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|676aa|up_6|NZ_CP044222.1_1533749_1535777_+,NA|194aa|up_5|NZ_CP044222.1_1536078_1536660_-,NA	NA|546aa|up_9|NZ_CP044222.1_1529330_1530968_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|340aa|up_8|NZ_CP044222.1_1531079_1532099_-	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional	NA|341aa|up_7|NZ_CP044222.1_1532563_1533586_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|676aa|up_6|NZ_CP044222.1_1533749_1535777_+	NA	NA|194aa|up_5|NZ_CP044222.1_1536078_1536660_-	NA	NA|197aa|up_4|NZ_CP044222.1_1536805_1537396_-	TIGR03370, VPLPA-CTERM, VPLPA-CTERM protein sorting domain	NA|269aa|up_3|NZ_CP044222.1_1537873_1538680_+	TIGR03370, VPLPA-CTERM, VPLPA-CTERM protein sorting domain	NA|231aa|up_2|NZ_CP044222.1_1538830_1539523_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|524aa|up_1|NZ_CP044222.1_1539577_1541149_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|121aa|up_0|NZ_CP044222.1_1541318_1541681_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|176aa|down_0|NZ_CP044222.1_1542144_1542672_+	TIGR03370, VPLPA-CTERM, VPLPA-CTERM protein sorting domain	NA|480aa|down_1|NZ_CP044222.1_1542768_1544208_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|534aa|down_2|NZ_CP044222.1_1544469_1546071_+	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily	NA|1811aa|down_3|NZ_CP044222.1_1546292_1551725_+	TIGR03661, T1SS_VCA0849, type I secretion C-terminal target domain (VC_A0849 subclass)	NA|356aa|down_4|NZ_CP044222.1_1551896_1552964_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|672aa|down_5|NZ_CP044222.1_1553122_1555138_+	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|149aa|down_6|NZ_CP044222.1_1555324_1555771_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|182aa|down_7|NZ_CP044222.1_1556113_1556659_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|372aa|down_8|NZ_CP044222.1_1556660_1557776_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|205aa|down_9|NZ_CP044222.1_1557772_1558387_-	PRK11752, PRK11752, putative S-transferase; Provisional
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	10	2186821-2186921	10	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	TCGCCCGGGGACCGGGCTCCTAC	23	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA|59aa|down_2|NZ_CP044222.1_2192134_2192311_-	NA|557aa|up_9|NZ_CP044222.1_2172953_2174624_+	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|411aa|up_8|NZ_CP044222.1_2174641_2175874_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|285aa|up_7|NZ_CP044222.1_2175889_2176744_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|361aa|up_6|NZ_CP044222.1_2176775_2177858_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|503aa|up_5|NZ_CP044222.1_2177854_2179363_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|333aa|up_4|NZ_CP044222.1_2179577_2180576_-	cd13543, PBP2_Fbp, Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|415aa|up_3|NZ_CP044222.1_2180729_2181974_+	pfam11294, DUF3095, Protein of unknown function (DUF3095)	NA|257aa|up_2|NZ_CP044222.1_2181935_2182706_-	cd07735, class_II_PDE_MBL-fold, class II cyclic nucleotide phosphodiesterases Saccharomyces cerevisiae PDE1, Dictyostelium discoideum PDE1 and PDE7, and related proteins; MBL-fold metallo-hydrolase domain	NA|549aa|up_1|NZ_CP044222.1_2182680_2184327_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|744aa|up_0|NZ_CP044222.1_2184582_2186814_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|1132aa|down_0|NZ_CP044222.1_2188242_2191638_-	PRK11281, PRK11281, mechanosensitive channel MscK	NA|144aa|down_1|NZ_CP044222.1_2191706_2192138_+	pfam12276, DUF3617, Protein of unknown function (DUF3617)	NA|59aa|down_2|NZ_CP044222.1_2192134_2192311_-	NA	NA|575aa|down_3|NZ_CP044222.1_2192455_2194180_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|64aa|down_4|NZ_CP044222.1_2194249_2194441_-	cd00491, 4Oxalocrotonate_Tautomerase, 4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones	NA|272aa|down_5|NZ_CP044222.1_2194468_2195284_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|264aa|down_6|NZ_CP044222.1_2195368_2196160_-	TIGR03218, 4-oxalocrotonate_decarboxylase, 4-oxalocrotonate decarboxylase	NA|343aa|down_7|NZ_CP044222.1_2196159_2197188_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|304aa|down_8|NZ_CP044222.1_2197201_2198113_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|262aa|down_9|NZ_CP044222.1_2198151_2198937_-	TIGR03220, 2-hydroxypenta-24-dienoate_hydratase, 2-oxopent-4-enoate hydratase
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	11	3203587-3203693	11	CRISPRCasFinder	no	DEDDh	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Unclear	TGCCCGTATAAATCCTGTAGAGCC	24	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA|67aa|down_0|NZ_CP044222.1_3204182_3204383_+,NA|87aa|down_1|NZ_CP044222.1_3204792_3205053_+,NA|226aa|down_3|NZ_CP044222.1_3205908_3206586_+	NA|176aa|up_9|NZ_CP044222.1_3193443_3193971_-	PRK12359, PRK12359, flavodoxin FldB; Provisional	NA|110aa|up_8|NZ_CP044222.1_3193970_3194300_-	pfam09361, Phasin_2, Phasin protein	NA|131aa|up_7|NZ_CP044222.1_3194441_3194834_+	cd16358, GlxI_Ni, Glyoxalase I that uses Ni(++) as cofactor	NA|267aa|up_6|NZ_CP044222.1_3195014_3195815_+	sd00010, SLR, Sel1-like repeat	NA|156aa|up_5|NZ_CP044222.1_3195882_3196350_+	pfam06271, RDD, RDD family	NA|353aa|up_4|NZ_CP044222.1_3196357_3197416_-	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|369aa|up_3|NZ_CP044222.1_3197412_3198519_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|506aa|up_2|NZ_CP044222.1_3198616_3200134_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|143aa|up_1|NZ_CP044222.1_3200133_3200562_+	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC	NA|946aa|up_0|NZ_CP044222.1_3200684_3203522_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|67aa|down_0|NZ_CP044222.1_3204182_3204383_+	NA	NA|87aa|down_1|NZ_CP044222.1_3204792_3205053_+	NA	NA|218aa|down_2|NZ_CP044222.1_3205113_3205767_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|226aa|down_3|NZ_CP044222.1_3205908_3206586_+	NA	NA|333aa|down_4|NZ_CP044222.1_3206582_3207581_-	COG4240, COG4240, Predicted kinase [General function prediction only]	NA|430aa|down_5|NZ_CP044222.1_3207739_3209029_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1055aa|down_6|NZ_CP044222.1_3209025_3212190_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|458aa|down_7|NZ_CP044222.1_3212186_3213560_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|399aa|down_8|NZ_CP044222.1_3213661_3214858_+	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional	NA|120aa|down_9|NZ_CP044222.1_3214872_3215232_+	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	12	3221769-3222007	12	CRISPRCasFinder	no	cas3	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Unclear	TGACCAATTGGTTAAAAGCCAACTGCTCTACCAACTGAGCTAACGACCC	49	0	0	NA	NA	NA	2	2	Unclear	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|96aa|up_5|NZ_CP044222.1_3218263_3218551_+,NA|127aa|up_4|NZ_CP044222.1_3218534_3218915_+,NA|149aa|up_3|NZ_CP044222.1_3218925_3219372_-,NA	NA|120aa|up_9|NZ_CP044222.1_3214872_3215232_+	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|344aa|up_8|NZ_CP044222.1_3215224_3216256_+	TIGR03536, DapD_gpp, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA|380aa|up_7|NZ_CP044222.1_3216271_3217411_+	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|281aa|up_6|NZ_CP044222.1_3217407_3218250_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|96aa|up_5|NZ_CP044222.1_3218263_3218551_+	NA	NA|127aa|up_4|NZ_CP044222.1_3218534_3218915_+	NA	NA|149aa|up_3|NZ_CP044222.1_3218925_3219372_-	NA	NA|157aa|up_2|NZ_CP044222.1_3219579_3220050_+	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown]	NA|370aa|up_1|NZ_CP044222.1_3220046_3221156_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|164aa|up_0|NZ_CP044222.1_3221175_3221667_+	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|928aa|down_0|NZ_CP044222.1_3222161_3224945_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|335aa|down_1|NZ_CP044222.1_3225138_3226143_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|652aa|down_2|NZ_CP044222.1_3226412_3228368_+	pfam06980, DUF1302, Protein of unknown function (DUF1302)	NA|446aa|down_3|NZ_CP044222.1_3228388_3229726_+	pfam07044, DUF1329, Protein of unknown function (DUF1329)	NA|167aa|down_4|NZ_CP044222.1_3229771_3230272_-	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	cas3|450aa|down_5|NZ_CP044222.1_3230457_3231807_+	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|308aa|down_6|NZ_CP044222.1_3231996_3232920_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|465aa|down_7|NZ_CP044222.1_3232954_3234349_-	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|183aa|down_8|NZ_CP044222.1_3234351_3234900_-	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|down_9|NZ_CP044222.1_3235135_3236059_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	13	3344229-3344377	13	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	TCGCCCGCGGAGCGGGCTCCTACA	24	0	0	NA	NA	NA	2	2	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA|112aa|up_2|NZ_CP044222.1_3341538_3341874_+,NA|71aa|up_1|NZ_CP044222.1_3341924_3342137_-,NA	NA|425aa|up_9|NZ_CP044222.1_3329543_3330818_+	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism]	NA|482aa|up_8|NZ_CP044222.1_3330827_3332273_+	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|367aa|up_7|NZ_CP044222.1_3332310_3333411_+	cd14659, Imelysin-like_IPPA, Imelysin-like protein	NA|371aa|up_6|NZ_CP044222.1_3333400_3334513_+	pfam07433, DUF1513, Protein of unknown function (DUF1513)	NA|1244aa|up_5|NZ_CP044222.1_3334575_3338307_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|514aa|up_4|NZ_CP044222.1_3338325_3339867_-	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators	NA|447aa|up_3|NZ_CP044222.1_3340186_3341527_+	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|112aa|up_2|NZ_CP044222.1_3341538_3341874_+	NA	NA|71aa|up_1|NZ_CP044222.1_3341924_3342137_-	NA	NA|623aa|up_0|NZ_CP044222.1_3342338_3344207_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|393aa|down_0|NZ_CP044222.1_3344384_3345563_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|717aa|down_1|NZ_CP044222.1_3345576_3347727_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|310aa|down_2|NZ_CP044222.1_3347742_3348672_-	PLN00022, PLN00022, electron transfer flavoprotein subunit alpha; Provisional	NA|251aa|down_3|NZ_CP044222.1_3348668_3349421_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|253aa|down_4|NZ_CP044222.1_3349540_3350299_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|330aa|down_5|NZ_CP044222.1_3350295_3351285_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|185aa|down_6|NZ_CP044222.1_3351315_3351870_-	pfam11136, DUF2889, Protein of unknown function (DUF2889)	NA|555aa|down_7|NZ_CP044222.1_3351901_3353566_-	PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	NA|106aa|down_8|NZ_CP044222.1_3353664_3353982_-	pfam02036, SCP2, SCP-2 sterol transfer family	NA|600aa|down_9|NZ_CP044222.1_3354105_3355905_-	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional
GCF_008727795.1_ASM872779v1	NZ_CP044222	Nitrincola sp. KXZD1103 chromosome, complete genome	14	3705603-3705699	14	CRISPRCasFinder	no		cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	Orphan	GTAGGAGCCCGGTCTCCGGGCGATG	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas3f,cas8f,cas5f,cas7f,cas6f,csa3,DinG,PD-DExK,RT	NA,NA	NA|350aa|up_9|NZ_CP044222.1_3691171_3692221_-	pfam09084, NMT1, NMT1/THI5 like	NA|464aa|up_8|NZ_CP044222.1_3692457_3693849_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|696aa|up_7|NZ_CP044222.1_3693748_3695836_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|227aa|up_6|NZ_CP044222.1_3695981_3696662_+	COG3658, COG3658, Cytochrome b [Energy production and conversion]	NA|1050aa|up_5|NZ_CP044222.1_3696658_3699808_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|359aa|up_4|NZ_CP044222.1_3699807_3700884_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|250aa|up_3|NZ_CP044222.1_3701061_3701811_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|365aa|up_2|NZ_CP044222.1_3701826_3702921_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|393aa|up_1|NZ_CP044222.1_3702922_3704101_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|338aa|up_0|NZ_CP044222.1_3704213_3705227_-	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|355aa|down_0|NZ_CP044222.1_3705705_3706770_-	PRK09196, PRK09196, fructose-bisphosphate aldolase class II	NA|390aa|down_1|NZ_CP044222.1_3706794_3707964_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|344aa|down_2|NZ_CP044222.1_3707986_3709018_-	PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional	NA|665aa|down_3|NZ_CP044222.1_3709057_3711052_-	PRK12753, PRK12753, transketolase; Reviewed	NA|407aa|down_4|NZ_CP044222.1_3711299_3712520_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|243aa|down_5|NZ_CP044222.1_3712535_3713264_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|318aa|down_6|NZ_CP044222.1_3713302_3714256_+	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|322aa|down_7|NZ_CP044222.1_3714252_3715218_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|189aa|down_8|NZ_CP044222.1_3715278_3715845_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|161aa|down_9|NZ_CP044222.1_3715856_3716339_+	PRK00109, PRK00109, Holliday junction resolvase RuvX
