assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727635.1_ASM872763v1	NZ_CP044186	Salmonella enterica subsp. enterica strain AR-0402 chromosome, complete genome	1	377115-379220	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	34,34,33	34	TypeI-E	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA|116aa|down_9|NZ_CP044186.1_389751_390099_-	NA|254aa|up_9|NZ_CP044186.1_368981_369743_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP044186.1_369723_370773_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP044186.1_370769_371249_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP044186.1_371248_371959_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP044186.1_371977_372289_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP044186.1_372479_372836_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP044186.1_372853_373459_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP044186.1_373445_374885_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP044186.1_374894_375803_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP044186.1_376053_377100_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP044186.1_379316_379610_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP044186.1_379609_380530_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP044186.1_380526_381177_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP044186.1_381158_381905_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP044186.1_381915_382974_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP044186.1_382987_383548_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP044186.1_383544_385101_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP044186.1_385112_387776_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP044186.1_388220_389174_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|116aa|down_9|NZ_CP044186.1_389751_390099_-	NA
GCF_008727635.1_ASM872763v1	NZ_CP044186	Salmonella enterica subsp. enterica strain AR-0402 chromosome, complete genome	2	396453-397030	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,8	9	TypeI-E	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA|116aa|up_6|NZ_CP044186.1_389751_390099_-,NA|68aa|up_4|NZ_CP044186.1_391010_391214_+,NA	cas8e|519aa|up_9|NZ_CP044186.1_383544_385101_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_8|NZ_CP044186.1_385112_387776_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_7|NZ_CP044186.1_388220_389174_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|116aa|up_6|NZ_CP044186.1_389751_390099_-	NA	NA|245aa|up_5|NZ_CP044186.1_390349_391084_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|68aa|up_4|NZ_CP044186.1_391010_391214_+	NA	NA|571aa|up_3|NZ_CP044186.1_391170_392883_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP044186.1_392882_394682_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP044186.1_395105_395468_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP044186.1_395557_396355_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP044186.1_397326_397998_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP044186.1_398133_399432_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP044186.1_399514_401152_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP044186.1_401379_402180_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP044186.1_402786_403374_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP044186.1_403453_406153_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP044186.1_406165_406939_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP044186.1_406958_407465_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP044186.1_407479_407950_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP044186.1_407946_408483_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_008727635.1_ASM872763v1	NZ_CP044186	Salmonella enterica subsp. enterica strain AR-0402 chromosome, complete genome	3	1409707-1409801	3	CRISPRCasFinder	no	cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	Unclear	GTAGACCCTGATCCAGTAGACCCGGT	26	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA|155aa|down_0|NZ_CP044186.1_1410940_1411405_-,NA|38aa|down_2|NZ_CP044186.1_1412325_1412439_-,NA|160aa|down_4|NZ_CP044186.1_1413964_1414444_-,NA|31aa|down_5|NZ_CP044186.1_1414644_1414737_-	NA|92aa|up_9|NZ_CP044186.1_1391605_1391881_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|704aa|up_8|NZ_CP044186.1_1391899_1394011_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_7|NZ_CP044186.1_1394015_1394705_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_6|NZ_CP044186.1_1394710_1396792_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|402aa|up_5|NZ_CP044186.1_1396827_1398033_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|up_4|NZ_CP044186.1_1398260_1399652_+	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|570aa|up_3|NZ_CP044186.1_1399772_1401482_+	pfam05170, AsmA, AsmA family	NA|773aa|up_2|NZ_CP044186.1_1401584_1403903_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|461aa|up_1|NZ_CP044186.1_1403914_1405297_-	PRK11462, PRK11462, putative transporter; Provisional	NA|206aa|up_0|NZ_CP044186.1_1407301_1407919_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_CP044186.1_1410940_1411405_-	NA	NA|286aa|down_1|NZ_CP044186.1_1411415_1412273_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|38aa|down_2|NZ_CP044186.1_1412325_1412439_-	NA	NA|227aa|down_3|NZ_CP044186.1_1413055_1413736_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|160aa|down_4|NZ_CP044186.1_1413964_1414444_-	NA	NA|31aa|down_5|NZ_CP044186.1_1414644_1414737_-	NA	NA|909aa|down_6|NZ_CP044186.1_1414758_1417485_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_7|NZ_CP044186.1_1417703_1418399_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_8|NZ_CP044186.1_1418904_1419807_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|310aa|down_9|NZ_CP044186.1_1419849_1420779_-	PRK09956, PRK09956, ISNCY family transposase
