assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727615.1_ASM872761v1	NZ_CP044184	Salmonella enterica subsp. enterica strain AR-0403 chromosome, complete genome	1	1163268-1163785	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,DEDDh,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	Type I-E	CCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	30,29,28	0	0	NA	NA	I-E:I-E:I-E	8,8,7	8	TypeI-E	csa3,DEDDh,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP044184.1_1155135_1155897_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP044184.1_1155877_1156927_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP044184.1_1156923_1157403_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP044184.1_1157402_1158113_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP044184.1_1158131_1158443_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP044184.1_1158633_1158990_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP044184.1_1159007_1159613_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP044184.1_1159599_1161039_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP044184.1_1161048_1161957_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP044184.1_1162207_1163254_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP044184.1_1163881_1164175_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP044184.1_1164174_1165095_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP044184.1_1165091_1165742_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP044184.1_1165723_1166470_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP044184.1_1166480_1167539_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|183aa|down_5|NZ_CP044184.1_1167552_1168101_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|down_6|NZ_CP044184.1_1168097_1169657_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP044184.1_1169668_1172332_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP044184.1_1172776_1173730_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP044184.1_1173817_1174552_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_008727615.1_ASM872761v1	NZ_CP044184	Salmonella enterica subsp. enterica strain AR-0403 chromosome, complete genome	2	1179908-1181399	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,DEDDh,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,20	24	TypeI-E	csa3,DEDDh,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG,c2c9_V-U4	NA,NA	cas5|249aa|up_9|NZ_CP044184.1_1165723_1166470_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_8|NZ_CP044184.1_1166480_1167539_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|183aa|up_7|NZ_CP044184.1_1167552_1168101_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|520aa|up_6|NZ_CP044184.1_1168097_1169657_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_5|NZ_CP044184.1_1169668_1172332_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_4|NZ_CP044184.1_1172776_1173730_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_3|NZ_CP044184.1_1173817_1174552_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NZ_CP044184.1_1174627_1176340_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NZ_CP044184.1_1176339_1178139_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_0|NZ_CP044184.1_1178562_1178925_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NZ_CP044184.1_1181695_1182367_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP044184.1_1182502_1183801_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP044184.1_1183883_1185521_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP044184.1_1185748_1186549_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP044184.1_1187154_1187742_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP044184.1_1187821_1190521_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP044184.1_1190533_1191307_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP044184.1_1191326_1191833_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP044184.1_1191847_1192318_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP044184.1_1192314_1192851_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_008727615.1_ASM872761v1	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	1	22412-22537	1	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DEDDh	Unclear	TGGTTTGGTCAGTATCCGCAGTACCTTCATTTTTAACTGCGGTTT	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,DinG,c2c9_V-U4	NA|77aa|up_6|NZ_CP044185.1_19582_19813_-,NA|130aa|up_2|NZ_CP044185.1_21169_21559_-,NA|115aa|up_1|NZ_CP044185.1_21539_21884_-,NA|117aa|down_2|NZ_CP044185.1_24873_25224_-,NA|60aa|down_4|NZ_CP044185.1_26515_26695_-,NA|67aa|down_7|NZ_CP044185.1_28999_29200_-	NA|232aa|up_9|NZ_CP044185.1_15206_15902_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|111aa|up_8|NZ_CP044185.1_15911_16244_-	COG4718, COG4718, Phage-related protein [Function unknown]	NA|1112aa|up_7|NZ_CP044185.1_16247_19583_-	COG5281, COG5281, Phage-related minor tail protein [Function unknown]	NA|77aa|up_6|NZ_CP044185.1_19582_19813_-	NA	NA|121aa|up_5|NZ_CP044185.1_19833_20196_-	pfam16462, Phage_TAC_14, Phage tail assembly chaperone protein, TAC	NA|158aa|up_4|NZ_CP044185.1_20265_20739_-	pfam16463, Phage_TTP_13, Phage tail tube protein family	NA|134aa|up_3|NZ_CP044185.1_20771_21173_-	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family	NA|130aa|up_2|NZ_CP044185.1_21169_21559_-	NA	NA|115aa|up_1|NZ_CP044185.1_21539_21884_-	NA	NA|108aa|up_0|NZ_CP044185.1_21880_22204_-	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|429aa|down_0|NZ_CP044185.1_22611_23898_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|306aa|down_1|NZ_CP044185.1_23972_24890_-	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad	NA|117aa|down_2|NZ_CP044185.1_24873_25224_-	NA	NA|420aa|down_3|NZ_CP044185.1_25256_26516_-	pfam04860, Phage_portal, Phage portal protein	NA|60aa|down_4|NZ_CP044185.1_26515_26695_-	NA	NA|570aa|down_5|NZ_CP044185.1_26688_28398_-	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|108aa|down_6|NZ_CP044185.1_28433_28757_-	pfam05119, Terminase_4, Phage terminase, small subunit	NA|67aa|down_7|NZ_CP044185.1_28999_29200_-	NA	NA|121aa|down_8|NZ_CP044185.1_29199_29562_-	pfam01844, HNH, HNH endonuclease	NA|346aa|down_9|NZ_CP044185.1_29615_30653_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]
