assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727595.1_ASM872759v1	NZ_CP044181	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome	1	2767144-2767244	1	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j	NA,NA	NA|448aa|up_9|NZ_CP044181.1_2753222_2754566_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP044181.1_2755193_2755646_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP044181.1_2755673_2757176_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP044181.1_2757200_2759879_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP044181.1_2760099_2760501_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP044181.1_2760500_2761445_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP044181.1_2761595_2761865_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP044181.1_2762106_2764242_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP044181.1_2764351_2765236_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP044181.1_2765341_2765422_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP044181.1_2767457_2768702_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP044181.1_2768792_2769800_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP044181.1_2769977_2770874_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP044181.1_2770864_2771860_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP044181.1_2772076_2772601_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP044181.1_2772594_2773098_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP044181.1_2773084_2773402_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP044181.1_2773439_2773883_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP044181.1_2773862_2774381_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP044181.1_2774511_2775147_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_008727595.1_ASM872759v1	NZ_CP044181	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome	2	3127089-3128214	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,18,18	18	TypeI-E	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j	NA,NA	NA|179aa|up_9|NZ_CP044181.1_3115637_3116174_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP044181.1_3116170_3116641_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP044181.1_3116655_3117162_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP044181.1_3117181_3117955_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP044181.1_3117967_3120667_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP044181.1_3120746_3121334_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP044181.1_3121938_3122739_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP044181.1_3122966_3124604_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP044181.1_3124686_3125985_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP044181.1_3126120_3126792_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP044181.1_3128311_3129109_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP044181.1_3129198_3129561_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP044181.1_3129984_3131784_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP044181.1_3131783_3133496_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP044181.1_3133571_3134306_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP044181.1_3134518_3135472_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP044181.1_3135915_3138579_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP044181.1_3138590_3140147_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP044181.1_3140143_3140704_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP044181.1_3140717_3141776_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_008727595.1_ASM872759v1	NZ_CP044181	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome	3	3144472-3146132	2,3,2,4,3	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	26,25,25,25,25	26	TypeI-E	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j	NA,NA	NA|245aa|up_9|NZ_CP044181.1_3133571_3134306_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP044181.1_3134518_3135472_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP044181.1_3135915_3138579_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP044181.1_3138590_3140147_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP044181.1_3140143_3140704_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP044181.1_3140717_3141776_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP044181.1_3141786_3142533_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP044181.1_3142514_3143165_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP044181.1_3143161_3144082_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP044181.1_3144081_3144375_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP044181.1_3146146_3147193_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP044181.1_3147443_3148352_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP044181.1_3148361_3149801_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP044181.1_3149787_3150393_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP044181.1_3150410_3150767_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP044181.1_3150957_3151269_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP044181.1_3151287_3151998_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP044181.1_3151997_3152477_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP044181.1_3152473_3153523_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP044181.1_3153503_3154265_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008727595.1_ASM872759v1	NZ_CP044181	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome	4	3337141-3337250	5	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGTCCCACCCTGTACCACTTTTTTTTAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j	NA,NA|276aa|down_2|NZ_CP044181.1_3340038_3340866_+,NA|198aa|down_4|NZ_CP044181.1_3342783_3343377_-	NA|212aa|up_9|NZ_CP044181.1_3328518_3329154_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|401aa|up_8|NZ_CP044181.1_3329227_3330430_-	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|338aa|up_7|NZ_CP044181.1_3330724_3331738_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_6|NZ_CP044181.1_3331748_3332729_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_5|NZ_CP044181.1_3332725_3333100_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_4|NZ_CP044181.1_3333096_3333618_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_3|NZ_CP044181.1_3333730_3334015_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|119aa|up_2|NZ_CP044181.1_3334109_3334466_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|273aa|up_1|NZ_CP044181.1_3334618_3335437_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|428aa|up_0|NZ_CP044181.1_3335481_3336765_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|690aa|down_0|NZ_CP044181.1_3337267_3339337_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|NZ_CP044181.1_3339372_3339588_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|276aa|down_2|NZ_CP044181.1_3340038_3340866_+	NA	NA|398aa|down_3|NZ_CP044181.1_3341200_3342394_-	pfam02810, SEC-C, SEC-C motif	NA|198aa|down_4|NZ_CP044181.1_3342783_3343377_-	NA	NA|56aa|down_5|NZ_CP044181.1_3343423_3343591_-	PRK09692, PRK09692, integrase; Provisional	NA|355aa|down_6|NZ_CP044181.1_3343604_3344669_-	PRK09692, PRK09692, integrase; Provisional	NA|388aa|down_7|NZ_CP044181.1_3345269_3346433_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|727aa|down_8|NZ_CP044181.1_3346440_3348621_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|470aa|down_9|NZ_CP044181.1_3348617_3350027_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family
GCF_008727595.1_ASM872759v1	NZ_CP044182	Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 plasmid pAR-0404-1, complete sequence	1	25500-25619	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,PD-DExK,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j	NA|182aa|up_9|NZ_CP044182.1_21133_21679_-,NA|91aa|up_8|NZ_CP044182.1_22004_22277_-,NA|66aa|up_7|NZ_CP044182.1_22289_22487_-,NA|60aa|up_6|NZ_CP044182.1_22508_22688_-,NA|110aa|up_5|NZ_CP044182.1_22729_23059_-,NA|72aa|up_4|NZ_CP044182.1_23151_23367_-,NA|82aa|up_3|NZ_CP044182.1_23356_23602_-,NA|108aa|up_2|NZ_CP044182.1_23646_23970_-,NA|77aa|down_0|NZ_CP044182.1_25702_25933_-,NA|149aa|down_2|NZ_CP044182.1_26747_27194_+,NA|119aa|down_3|NZ_CP044182.1_27330_27687_+,NA|326aa|down_4|NZ_CP044182.1_27683_28661_-,NA|94aa|down_5|NZ_CP044182.1_28685_28967_-,NA|28aa|down_8|NZ_CP044182.1_30906_30990_-,NA|62aa|down_9|NZ_CP044182.1_31294_31480_-	NA|182aa|up_9|NZ_CP044182.1_21133_21679_-	NA	NA|91aa|up_8|NZ_CP044182.1_22004_22277_-	NA	NA|66aa|up_7|NZ_CP044182.1_22289_22487_-	NA	NA|60aa|up_6|NZ_CP044182.1_22508_22688_-	NA	NA|110aa|up_5|NZ_CP044182.1_22729_23059_-	NA	NA|72aa|up_4|NZ_CP044182.1_23151_23367_-	NA	NA|82aa|up_3|NZ_CP044182.1_23356_23602_-	NA	NA|108aa|up_2|NZ_CP044182.1_23646_23970_-	NA	NA|94aa|up_1|NZ_CP044182.1_24115_24397_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP044182.1_24386_24638_-	PRK02854, PRK02854, primosomal protein DnaT	NA|77aa|down_0|NZ_CP044182.1_25702_25933_-	NA	NA|279aa|down_1|NZ_CP044182.1_25871_26708_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_2|NZ_CP044182.1_26747_27194_+	NA	NA|119aa|down_3|NZ_CP044182.1_27330_27687_+	NA	NA|326aa|down_4|NZ_CP044182.1_27683_28661_-	NA	NA|94aa|down_5|NZ_CP044182.1_28685_28967_-	NA	NA|221aa|down_6|NZ_CP044182.1_29064_29727_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|215aa|down_7|NZ_CP044182.1_30107_30752_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|28aa|down_8|NZ_CP044182.1_30906_30990_-	NA	NA|62aa|down_9|NZ_CP044182.1_31294_31480_-	NA
