assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727555.1_ASM872755v1	NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	1	1534349-1537977	1,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,28,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	59,59,57,57,57	59	TypeI-E	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP044200.1_1526215_1526977_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP044200.1_1526957_1528007_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP044200.1_1528003_1528483_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP044200.1_1528482_1529193_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP044200.1_1529211_1529523_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP044200.1_1529713_1530070_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP044200.1_1530087_1530693_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP044200.1_1530679_1532119_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP044200.1_1532128_1533037_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP044200.1_1533287_1534334_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP044200.1_1538061_1538355_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP044200.1_1538357_1539275_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|235aa|down_2|NZ_CP044200.1_1539274_1539979_-	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|242aa|down_3|NZ_CP044200.1_1539978_1540704_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|355aa|down_4|NZ_CP044200.1_1540713_1541778_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|201aa|down_5|NZ_CP044200.1_1541794_1542397_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|down_6|NZ_CP044200.1_1542413_1543949_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP044200.1_1544306_1547006_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|down_8|NZ_CP044200.1_1547390_1548344_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP044200.1_1548431_1549166_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_008727555.1_ASM872755v1	NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	2	1554523-1555771	2,2,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,15	20	TypeI-E	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|64aa|up_4|NZ_CP044200.1_1549092_1549284_+,NA	cse2gr11|201aa|up_9|NZ_CP044200.1_1541794_1542397_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|512aa|up_8|NZ_CP044200.1_1542413_1543949_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_7|NZ_CP044200.1_1544306_1547006_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|318aa|up_6|NZ_CP044200.1_1547390_1548344_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_5|NZ_CP044200.1_1548431_1549166_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|64aa|up_4|NZ_CP044200.1_1549092_1549284_+	NA	NA|571aa|up_3|NZ_CP044200.1_1549240_1550953_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP044200.1_1550952_1552752_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP044200.1_1553175_1553538_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP044200.1_1553627_1554425_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP044200.1_1556067_1556739_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP044200.1_1556874_1558173_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP044200.1_1558255_1559893_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP044200.1_1560120_1560921_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP044200.1_1561526_1562114_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP044200.1_1562193_1564893_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP044200.1_1564905_1565679_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP044200.1_1565698_1566205_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP044200.1_1566219_1566690_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP044200.1_1566686_1567223_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
GCF_008727555.1_ASM872755v1	NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	3	2425479-2425573	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GTAGACCCTGATCCAGTAGACCCGGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|70aa|up_9|NZ_CP044200.1_2410396_2410606_+,NA|155aa|down_0|NZ_CP044200.1_2426712_2427177_-,NA|38aa|down_2|NZ_CP044200.1_2428097_2428211_-,NA|160aa|down_4|NZ_CP044200.1_2429738_2430218_-,NA|31aa|down_5|NZ_CP044200.1_2430418_2430511_-	NA|70aa|up_9|NZ_CP044200.1_2410396_2410606_+	NA	NA|242aa|up_8|NZ_CP044200.1_2410602_2411328_+	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|410aa|up_7|NZ_CP044200.1_2413704_2414934_-	PRK09723, PRK09723, fimbrial-like adhesin	NA|198aa|up_6|NZ_CP044200.1_2414957_2415551_-	PRK15262, PRK15262, putative fimbrial protein StaF; Provisional	NA|203aa|up_5|NZ_CP044200.1_2415566_2416175_-	PRK15263, PRK15263, fimbrial-like protein	NA|195aa|up_4|NZ_CP044200.1_2416189_2416774_-	PRK15241, PRK15241, putative fimbrial protein StaD; Provisional	NA|867aa|up_3|NZ_CP044200.1_2416787_2419388_-	PRK09828, PRK09828, putative fimbrial outer membrane usher protein; Provisional	NA|248aa|up_2|NZ_CP044200.1_2419408_2420152_-	PRK09926, PRK09926, fimbrial chaperone	NA|209aa|up_1|NZ_CP044200.1_2420295_2420922_-	PRK15239, PRK15239, putative fimbrial protein StaA; Provisional	NA|206aa|up_0|NZ_CP044200.1_2423073_2423691_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|155aa|down_0|NZ_CP044200.1_2426712_2427177_-	NA	NA|286aa|down_1|NZ_CP044200.1_2427187_2428045_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|38aa|down_2|NZ_CP044200.1_2428097_2428211_-	NA	NA|227aa|down_3|NZ_CP044200.1_2428829_2429510_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|160aa|down_4|NZ_CP044200.1_2429738_2430218_-	NA	NA|31aa|down_5|NZ_CP044200.1_2430418_2430511_-	NA	NA|909aa|down_6|NZ_CP044200.1_2430532_2433259_-	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|232aa|down_7|NZ_CP044200.1_2433478_2434174_-	PRK15385, PRK15385, MgtC family protein	NA|301aa|down_8|NZ_CP044200.1_2434680_2435583_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|314aa|down_9|NZ_CP044200.1_2435625_2436567_-	PRK09956, PRK09956, ISNCY family transposase
GCF_008727555.1_ASM872755v1	NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4	4350962-4351069	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GCGCCCGGTCTGTCCAACTGGCTGCGCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|66aa|up_1|NZ_CP044200.1_4349992_4350190_-,NA|128aa|down_4|NZ_CP044200.1_4354217_4354601_-	NA|300aa|up_9|NZ_CP044200.1_4339565_4340465_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|553aa|up_8|NZ_CP044200.1_4340666_4342325_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_7|NZ_CP044200.1_4342321_4343272_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|373aa|up_6|NZ_CP044200.1_4343417_4344536_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_5|NZ_CP044200.1_4344532_4346479_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_4|NZ_CP044200.1_4346608_4346830_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_3|NZ_CP044200.1_4347153_4347474_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_2|NZ_CP044200.1_4347504_4349781_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|66aa|up_1|NZ_CP044200.1_4349992_4350190_-	NA	NA|126aa|up_0|NZ_CP044200.1_4350351_4350729_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|226aa|down_0|NZ_CP044200.1_4351403_4352081_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|287aa|down_1|NZ_CP044200.1_4352100_4352961_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|304aa|down_2|NZ_CP044200.1_4353069_4353981_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|73aa|down_3|NZ_CP044200.1_4354071_4354290_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|128aa|down_4|NZ_CP044200.1_4354217_4354601_-	NA	NA|235aa|down_5|NZ_CP044200.1_4354601_4355306_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_6|NZ_CP044200.1_4355350_4357072_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_7|NZ_CP044200.1_4357072_4358839_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|down_8|NZ_CP044200.1_4358952_4359921_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_9|NZ_CP044200.1_4360467_4360962_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp
