The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	598336	605609	4799356		Morganella_phage(33.33%)	8	NA	NA
WP_063809543.1|598336_599767_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_063809542.1|599840_600536_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107434.1|600615_600927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063809541.1|601579_602791_+	porin	NA	Q1MVN1	Enterobacteria_phage	55.5	7.5e-109
WP_024131109.1|603050_603239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|603249_603462_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457665.1|603918_605187_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_058214695.1|605189_605609_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.7	1.9e-35
>prophage 2
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	723552	734058	4799356		Enterobacteria_phage(37.5%)	9	NA	NA
WP_000126351.1|723552_724866_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
WP_000565903.1|724892_725972_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648783.1|725976_726750_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000973714.1|727744_728296_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
WP_000857530.1|728296_729175_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
WP_001023659.1|729222_730122_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_063809121.1|730121_731207_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|731583_732477_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_063809120.1|732654_734058_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
>prophage 3
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	813879	823050	4799356	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195334.1|813879_815913_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|816153_816612_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_063809094.1|816783_817314_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
WP_063809093.1|817370_817838_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	1.1e-73
WP_000598637.1|817884_818604_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|818600_820286_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|820508_821240_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|821299_821407_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|821387_822119_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|822102_823050_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 4
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	2869232	2958549	4799356	tRNA,holin,head,tail,plate,portal,integrase,terminase,capsid,protease	Shigella_phage(38.96%)	110	2906592:2906607	2966382:2966397
WP_000587743.1|2869232_2869961_-	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
WP_000084334.1|2870695_2871151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063808969.1|2871147_2871762_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_063808968.1|2871768_2873427_-|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.0e-52
WP_063808967.1|2873429_2874062_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_063808966.1|2874054_2875170_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.7	3.4e-100
WP_063808965.1|2875160_2875520_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	4.7e-35
WP_063808964.1|2875683_2877231_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_023138093.1|2877230_2878160_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.4	6.1e-151
WP_000593184.1|2878156_2878519_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_071786937.1|2878594_2878837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023236919.1|2878845_2879568_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	5.1e-12
WP_063808963.1|2879577_2880621_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	1.9e-76
WP_001269716.1|2880608_2880818_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_024797328.1|2880817_2881771_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	1.8e-36
WP_063808962.1|2881770_2884125_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	6.2e-67
WP_001185654.1|2884221_2884350_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_063808961.1|2884309_2884627_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|2884678_2885203_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729848.1|2885202_2886630_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
WP_000875314.1|2886619_2886817_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000777266.1|2887427_2887742_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_063808960.1|2887754_2888360_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	1.2e-59
WP_001226439.1|2888362_2888650_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|2889225_2889573_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_000136394.1|2889703_2891053_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_063808959.1|2891397_2893047_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_001541297.1|2893490_2893733_+	outer membrane protein	NA	NA	NA	NA	NA
WP_063808958.1|2893796_2894435_+	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_063808957.1|2894431_2895169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063808956.1|2895168_2897265_+	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_063808955.1|2897407_2897818_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_001252081.1|2897983_2898874_-	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000382573.1|2898888_2900433_-	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_000695415.1|2900564_2901755_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000179176.1|2902116_2903226_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000973644.1|2903314_2904673_+	maltoporin	NA	NA	NA	NA	NA
WP_000782497.1|2904836_2905754_+	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000019230.1|2905934_2906432_+	chorismate lyase	NA	NA	NA	NA	NA
WP_000455249.1|2906445_2907318_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
2906592:2906607	attL	GGCAGTTTTTGTCGCT	NA	NA	NA	NA
WP_000017360.1|2907416_2909837_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000002900.1|2910007_2910376_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000646079.1|2910484_2911093_+	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_001128113.1|2911271_2912597_+	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_001575282.1|2912593_2912707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001030592.1|2912728_2912938_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000416271.1|2913037_2913553_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_039589972.1|2913799_2915110_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_001535325.1|2915403_2915985_+	SocA family protein	NA	A0A139ZPG5	Marinitoga_camini_virus	29.6	8.8e-07
WP_000900143.1|2915990_2916452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093914.1|2916485_2916758_-	hypothetical protein	NA	S5MQM5	Escherichia_phage	96.6	5.7e-41
WP_024146004.1|2916794_2917367_-	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	99.5	7.1e-110
WP_028120432.1|2918172_2918364_-	hypothetical protein	NA	A0A2I6TD51	Escherichia_phage	98.4	6.2e-26
WP_063808954.1|2918365_2918839_-	ead/Ea22-like family protein	NA	K7PJQ4	Enterobacteria_phage	69.5	2.8e-59
WP_151108638.1|2918835_2919714_-	phosphoadenosine phosphosulfate reductase family protein	NA	A0A2R2Z314	Escherichia_phage	92.1	1.6e-164
WP_000008249.1|2919704_2920241_-	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	98.9	4.8e-100
WP_000081266.1|2920369_2921194_-	DUF2303 family protein	NA	U5P439	Shigella_phage	99.3	2.3e-149
WP_072104153.1|2921259_2921808_-	hypothetical protein	NA	U5P4J6	Shigella_phage	97.3	2.3e-97
WP_000981537.1|2922079_2922733_-	helix-turn-helix domain-containing protein	NA	K7PLZ5	Enterobacterial_phage	60.8	5.7e-71
WP_001231956.1|2922828_2923026_+	hypothetical protein	NA	K7PHB1	Enterobacterial_phage	56.9	1.1e-14
WP_000514174.1|2923053_2923638_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	60.9	5.5e-57
WP_001250270.1|2923813_2924026_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	5.4e-15
WP_000054957.1|2923982_2924975_+	hypothetical protein	NA	U5P0A0	Shigella_phage	98.2	1.2e-93
WP_000066917.1|2925069_2925723_+	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.5	1.9e-127
WP_000210148.1|2925719_2926046_+	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	98.1	1.0e-52
WP_000767130.1|2926042_2926432_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	99.2	1.6e-68
WP_001061375.1|2926451_2927249_+	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	99.2	1.3e-149
WP_012513026.1|2927256_2928246_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	98.5	8.9e-193
WP_023200325.1|2928259_2929012_+	antitermination protein	NA	Q8SBE4	Shigella_phage	99.2	1.1e-137
WP_001306866.1|2929300_2929543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023200326.1|2929680_2930016_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	92.8	2.1e-53
WP_023200327.1|2930019_2930496_+	glycoside hydrolase family protein	NA	S5FV07	Shigella_phage	97.5	1.4e-87
WP_023259402.1|2930479_2930872_+	DUF2570 domain-containing protein	NA	U5P0U9	Shigella_phage	86.0	1.2e-52
WP_118998233.1|2930756_2931032_+	peptidase	NA	U5P461	Shigella_phage	75.8	6.6e-29
WP_023200328.1|2931325_2931676_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.0	2.9e-61
WP_000929174.1|2931801_2932287_+|terminase	phage terminase small subunit P27 family	terminase	Q8SBI1	Shigella_phage	99.4	2.1e-86
WP_000088161.1|2932300_2934034_+|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	100.0	0.0e+00
WP_000605606.1|2934045_2934228_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
WP_001514795.1|2934227_2935469_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.5	5.0e-241
WP_021578635.1|2935446_2936097_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	99.1	3.6e-118
WP_137992961.1|2936111_2937317_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	99.3	5.9e-223
WP_021577001.1|2937366_2937594_+	hypothetical protein	NA	S5FNU1	Shigella_phage	94.9	2.2e-22
WP_000927719.1|2937568_2937892_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	99.1	1.1e-56
WP_000702388.1|2937888_2938299_+|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	97.8	5.9e-74
WP_022630978.1|2938273_2938780_+	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	99.4	5.0e-91
WP_000779279.1|2938776_2939337_+	hypothetical protein	NA	M1FQV7	Enterobacteria_phage	99.5	2.3e-105
WP_000497751.1|2939345_2939516_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
WP_022630977.1|2939499_2940996_+|tail	tail sheath protein	tail	M1FN90	Enterobacteria_phage	99.0	7.7e-273
WP_052874966.1|2940995_2941352_+|tail	phage tail protein	tail	U5P076	Shigella_phage	99.2	2.6e-62
WP_000661047.1|2941351_2941621_+|tail	phage tail assembly protein	tail	S5FNR3	Shigella_phage	100.0	3.5e-43
WP_015675131.1|2941587_2941770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023200330.1|2941762_2943595_+|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	99.2	4.7e-304
WP_001439754.1|2943676_2944189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000219913.1|2944279_2945608_+	DNA circularization protein	NA	Q8SBG8	Shigella_phage	99.3	8.4e-247
WP_000999499.1|2945604_2946684_+|plate	baseplate protein	plate	Q8SBG7	Shigella_phage	99.7	5.3e-207
WP_022630975.1|2946683_2947232_+|plate	phage baseplate assembly protein V	plate	U5P081	Shigella_phage	97.8	1.9e-96
WP_000424732.1|2947231_2947657_+	hypothetical protein	NA	U5P0R9	Shigella_phage	100.0	2.3e-81
WP_022630974.1|2947643_2948702_+|plate	baseplate J/gp47 family protein	plate	Q8SBG4	Shigella_phage	98.6	5.2e-199
WP_107973969.1|2948692_2949277_+	YmfQ family protein	NA	O22003	Shigella_phage	99.5	7.0e-113
WP_137999936.1|2949280_2950381_+|tail	phage tail protein	tail	U5P0I1	Shigella_phage	99.0	3.2e-50
WP_107973972.1|2950384_2950813_+|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	44.4	5.3e-25
WP_107973971.1|2950784_2951393_-|tail	phage tail protein	tail	K7PMC4	Enterobacterial_phage	46.4	8.5e-45
WP_000639149.1|2952260_2952824_+	recombinase family protein	NA	K7PJT4	Enterobacteria_phage	79.1	3.4e-80
WP_077248251.1|2952848_2952971_+|capsid	capsid protein	capsid	Q9JFR8	Wheat_rosette_stunt_virus	73.5	2.0e-06
WP_001217553.1|2952967_2953216_-	DinI family protein	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
WP_000332264.1|2953277_2954375_-|integrase	site-specific integrase	integrase	S5MDN5	Escherichia_phage	100.0	4.3e-212
WP_137992964.1|2954463_2955501_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_000891414.1|2955668_2955911_+	envelope stress response protein PspG	NA	NA	NA	NA	NA
WP_000235555.1|2956085_2957069_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_000918353.1|2957133_2958549_+	replicative DNA helicase DnaB	NA	A0A1B0VG30	Salmonella_phage	78.4	7.0e-199
2966382:2966397	attR	AGCGACAAAAACTGCC	NA	NA	NA	NA
>prophage 5
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	4302259	4306511	4799356		Salmonella_phage(100.0%)	8	NA	NA
WP_077950919.1|4302259_4303198_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	39.6	6.1e-34
WP_063809348.1|4303304_4303526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063809349.1|4304075_4304372_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	90.4	4.9e-22
WP_063809350.1|4304457_4304706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063809351.1|4304787_4305129_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	98.2	1.3e-55
WP_063809352.1|4305196_4305430_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	96.1	1.2e-31
WP_063809353.1|4305429_4305657_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	97.3	2.3e-35
WP_063809354.1|4305653_4306511_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.1	8.1e-158
>prophage 6
NZ_CP044200	Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome	4799356	4343417	4350729	4799356	protease,integrase	Dickeya_phage(16.67%)	7	4344668:4344682	4355927:4355941
WP_023227176.1|4343417_4344536_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
WP_063809363.1|4344532_4346479_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.6	3.1e-40
4344668:4344682	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|4346608_4346830_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|4347153_4347474_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934064.1|4347504_4349781_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_001117984.1|4349992_4350190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|4350351_4350729_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
4355927:4355941	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
