assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008727195.1_ASM872719v1	NZ_CP044148	Escherichia coli O157 strain AR-0427 chromosome, complete genome	1	1855246-1855458	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	NA,NA	NA|254aa|up_9|NZ_CP044148.1_1847058_1847820_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP044148.1_1847800_1848850_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP044148.1_1848846_1849326_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP044148.1_1849325_1850036_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP044148.1_1850054_1850366_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP044148.1_1850559_1850883_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP044148.1_1850932_1851538_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP044148.1_1851537_1852965_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP044148.1_1852966_1853875_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP044148.1_1854126_1855164_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP044148.1_1855553_1855847_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP044148.1_1855843_1856767_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP044148.1_1856763_1857414_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP044148.1_1857395_1858142_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP044148.1_1858152_1859208_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP044148.1_1859219_1859756_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP044148.1_1859752_1861315_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP044148.1_1861412_1864112_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP044148.1_1864303_1864456_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP044148.1_1864719_1865454_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_008727195.1_ASM872719v1	NZ_CP044148	Escherichia coli O157 strain AR-0427 chromosome, complete genome	2	1881152-1881240	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	NA,NA	NA|600aa|up_9|NZ_CP044148.1_1867239_1869039_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|NZ_CP044148.1_1869354_1869720_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP044148.1_1869797_1871069_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP044148.1_1871059_1871320_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP044148.1_1871336_1871912_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP044148.1_1872916_1873696_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP044148.1_1875103_1876558_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP044148.1_1876627_1877413_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP044148.1_1877731_1879009_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP044148.1_1879035_1880514_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP044148.1_1881579_1882251_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP044148.1_1882405_1883026_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP044148.1_1883039_1883714_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP044148.1_1883947_1885096_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP044148.1_1885092_1886007_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP044148.1_1886066_1887365_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP044148.1_1887452_1889090_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP044148.1_1889317_1890109_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP044148.1_1890179_1890515_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP044148.1_1890514_1890763_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_008727195.1_ASM872719v1	NZ_CP044148	Escherichia coli O157 strain AR-0427 chromosome, complete genome	3	3583561-3583707	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	NA|579aa|up_6|NZ_CP044148.1_3574821_3576558_+,NA	NA|238aa|up_9|NZ_CP044148.1_3572724_3573438_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP044148.1_3573508_3574102_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP044148.1_3574246_3574699_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP044148.1_3574821_3576558_+	NA	NA|335aa|up_5|NZ_CP044148.1_3576614_3577619_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP044148.1_3577780_3578197_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP044148.1_3578242_3578746_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP044148.1_3578938_3580135_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP044148.1_3580189_3583045_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP044148.1_3583044_3583488_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP044148.1_3583743_3585255_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP044148.1_3585521_3586622_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP044148.1_3586621_3587704_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|560aa|down_3|NZ_CP044148.1_3587686_3589366_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP044148.1_3589495_3590515_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|650aa|down_5|NZ_CP044148.1_3590885_3592835_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|405aa|down_6|NZ_CP044148.1_3593034_3594248_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|126aa|down_7|NZ_CP044148.1_3594430_3594808_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_8|NZ_CP044148.1_3594929_3595262_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_9|NZ_CP044148.1_3596265_3596733_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008727195.1_ASM872719v1	NZ_CP044148	Escherichia coli O157 strain AR-0427 chromosome, complete genome	4	3788685-3788816	2	PILER-CR	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	NA,NA	NA|274aa|up_9|NZ_CP044148.1_3774843_3775665_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_CP044148.1_3776120_3777269_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NZ_CP044148.1_3777286_3780508_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_CP044148.1_3780768_3781164_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_CP044148.1_3781282_3781873_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_CP044148.1_3781878_3782664_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_CP044148.1_3782772_3784326_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_CP044148.1_3784399_3785617_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP044148.1_3785745_3786888_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP044148.1_3786918_3788433_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP044148.1_3788906_3789677_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP044148.1_3789691_3790633_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP044148.1_3790683_3791970_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP044148.1_3791966_3792254_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_CP044148.1_3792311_3793643_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_CP044148.1_3793750_3794281_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_CP044148.1_3794273_3796136_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_CP044148.1_3796327_3796807_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|78aa|down_8|NZ_CP044148.1_3796892_3797126_+	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|105aa|down_9|NZ_CP044148.1_3797128_3797443_+	pfam01845, CcdB, CcdB protein
GCF_008727195.1_ASM872719v1	NZ_CP044148	Escherichia coli O157 strain AR-0427 chromosome, complete genome	5	3813586-3813720	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	NA|251aa|up_4|NZ_CP044148.1_3805539_3806292_+,NA|190aa|down_7|NZ_CP044148.1_3822761_3823331_+	NA|274aa|up_9|NZ_CP044148.1_3798674_3799496_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP044148.1_3799492_3800482_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP044148.1_3800481_3801768_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP044148.1_3801820_3804175_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP044148.1_3804429_3805245_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP044148.1_3805539_3806292_+	NA	NA|220aa|up_3|NZ_CP044148.1_3806709_3807369_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP044148.1_3807380_3810287_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP044148.1_3810450_3812802_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP044148.1_3812876_3813572_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP044148.1_3813771_3815274_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP044148.1_3815284_3816985_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP044148.1_3817323_3818202_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP044148.1_3818287_3819052_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP044148.1_3819138_3819837_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP044148.1_3819820_3821431_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP044148.1_3821406_3822390_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP044148.1_3822761_3823331_+	NA	NA|553aa|down_8|NZ_CP044148.1_3823559_3825218_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP044148.1_3825306_3825438_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
