assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008694005.1_ASM869400v1	NZ_CP044093	Streptococcus pyogenes strain FDAARGOS_668 chromosome, complete genome	1	1409832-1410263	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	 Type I-U?,Type I-U,Type I-C	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT,GTCTCACCCTTCATGGGTGAGTGGATTGAAA,GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	32,31,32	1	1	1410199-1410231	NZ_CP044093.1_799562-799530	I-C:I-C:I-C	5,6,6	6	TypeI-U?,TypeI-U,TypeI-C	csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	NA,NA	NA|67aa|up_9|NZ_CP044093.1_1398099_1398300_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|NZ_CP044093.1_1398296_1398860_+	pfam13238, AAA_18, AAA domain	NA|883aa|up_7|NZ_CP044093.1_1398861_1401510_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|NZ_CP044093.1_1401663_1404072_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|NZ_CP044093.1_1404204_1404933_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|NZ_CP044093.1_1404932_1406828_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|NZ_CP044093.1_1406832_1407681_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|NZ_CP044093.1_1407682_1408357_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP044093.1_1408353_1409379_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP044093.1_1409389_1409683_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|NZ_CP044093.1_1410422_1411133_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|NZ_CP044093.1_1411145_1411769_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|NZ_CP044093.1_1411811_1412918_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_CP044093.1_1413005_1413746_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|NZ_CP044093.1_1413742_1415476_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|NZ_CP044093.1_1415548_1416628_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|NZ_CP044093.1_1416650_1417367_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|NZ_CP044093.1_1417532_1418006_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|NZ_CP044093.1_1418147_1418828_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|NZ_CP044093.1_1419101_1420337_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCF_008694005.1_ASM869400v1	NZ_CP044093	Streptococcus pyogenes strain FDAARGOS_668 chromosome, complete genome	2	1598815-1598915	2	CRISPRCasFinder	no		csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	NA|262aa|up_6|NZ_CP044093.1_1590198_1590984_-,NA	NA|755aa|up_9|NZ_CP044093.1_1585569_1587834_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NZ_CP044093.1_1588090_1588711_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NZ_CP044093.1_1589451_1590066_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_CP044093.1_1590198_1590984_-	NA	NA|233aa|up_5|NZ_CP044093.1_1590993_1591692_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_CP044093.1_1591691_1592063_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_CP044093.1_1592247_1595358_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_CP044093.1_1595437_1596451_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_CP044093.1_1596513_1598016_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_CP044093.1_1598233_1598791_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_CP044093.1_1598966_1600781_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_CP044093.1_1600962_1601298_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_CP044093.1_1601404_1602046_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_CP044093.1_1602055_1602685_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_CP044093.1_1602700_1603537_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_CP044093.1_1603906_1604680_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_CP044093.1_1605049_1606285_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_CP044093.1_1606404_1607727_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_CP044093.1_1608255_1610574_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_CP044093.1_1610937_1611186_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_008694005.1_ASM869400v1	NZ_CP044093	Streptococcus pyogenes strain FDAARGOS_668 chromosome, complete genome	3	1787024-1787187	2	PILER-CR	no	csn2,cas2,cas1,cas9	csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	Type II-A,Type II-C,Type II-B	GCTCAATCGTTTTGGGACCATTCAAAACAGCATAGCTCTAAAACAT	46	0	0	NA	NA	II-A	2	2	TypeII-A,TypeII-C,TypeII-B	csm6,DinG,cas3,csa3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9	NA|35aa|up_3|NZ_CP044093.1_1785106_1785211_-,NA|214aa|down_8|NZ_CP044093.1_1797048_1797690_-	NA|164aa|up_9|NZ_CP044093.1_1778985_1779477_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_8|NZ_CP044093.1_1779495_1779921_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_7|NZ_CP044093.1_1780127_1781147_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_6|NZ_CP044093.1_1781276_1781714_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|351aa|up_5|NZ_CP044093.1_1781899_1782952_-	PHA03169, PHA03169, hypothetical protein; Provisional	NA|611aa|up_4|NZ_CP044093.1_1783214_1785047_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_3|NZ_CP044093.1_1785106_1785211_-	NA	NA|378aa|up_2|NZ_CP044093.1_1785215_1786349_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|83aa|up_1|NZ_CP044093.1_1786394_1786643_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|60aa|up_0|NZ_CP044093.1_1786706_1786886_-	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate	csn2|221aa|down_0|NZ_CP044093.1_1787287_1787950_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP044093.1_1787939_1788281_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP044093.1_1788277_1789147_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_CP044093.1_1789146_1793253_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_CP044093.1_1793697_1794330_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_CP044093.1_1794329_1795094_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_CP044093.1_1795093_1795846_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_CP044093.1_1795855_1796986_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_CP044093.1_1797048_1797690_-	NA	NA|452aa|down_9|NZ_CP044093.1_1797813_1799169_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
