assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	1	80869-80951	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	GCCTTATCCGGCCTACGGTATTACGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|355aa|up_9|NZ_CP044097.1_66397_67462_-	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|470aa|up_8|NZ_CP044097.1_67940_69350_+	pfam02614, UxaC, Glucuronate isomerase	NA|515aa|up_7|NZ_CP044097.1_69370_70915_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|488aa|up_6|NZ_CP044097.1_70988_72452_+	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|348aa|up_5|NZ_CP044097.1_72823_73867_+	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|625aa|up_4|NZ_CP044097.1_73943_75818_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|255aa|up_3|NZ_CP044097.1_75935_76700_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|140aa|up_2|NZ_CP044097.1_76745_77165_+	pfam05025, RbsD_FucU, RbsD / FucU transport protein family	NA|351aa|up_1|NZ_CP044097.1_77203_78256_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|737aa|up_0|NZ_CP044097.1_78609_80820_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|259aa|down_0|NZ_CP044097.1_81003_81780_-	pfam16227, DUF4886, Domain of unknown function (DUF4886)	NA|346aa|down_1|NZ_CP044097.1_81790_82828_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|457aa|down_2|NZ_CP044097.1_83242_84613_+	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like	NA|298aa|down_3|NZ_CP044097.1_84650_85544_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|456aa|down_4|NZ_CP044097.1_85891_87259_+	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion]	NA|565aa|down_5|NZ_CP044097.1_87286_88981_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|633aa|down_6|NZ_CP044097.1_89337_91236_+	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|469aa|down_7|NZ_CP044097.1_91364_92771_-	pfam00563, EAL, EAL domain	NA|301aa|down_8|NZ_CP044097.1_92826_93729_-	cd10466, FimH_man-bind, Mannose binding  domain of FimH and related proteins	NA|168aa|down_9|NZ_CP044097.1_93745_94249_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	2	416810-416921	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	GCTTACCGGGCCTACAAACCATCGTAGGCCGGAT	34	1	1	416844-416887	NZ_CP044097.1_405782-405739	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|381aa|up_9|NZ_CP044097.1_405949_407092_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|506aa|up_8|NZ_CP044097.1_407125_408643_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|up_7|NZ_CP044097.1_409123_409894_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|up_6|NZ_CP044097.1_409909_410851_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|up_5|NZ_CP044097.1_410912_412199_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|up_4|NZ_CP044097.1_412195_412483_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|up_3|NZ_CP044097.1_412600_413932_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|78aa|up_2|NZ_CP044097.1_414034_414268_+	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|177aa|up_1|NZ_CP044097.1_414372_414903_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|up_0|NZ_CP044097.1_414895_416758_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_0|NZ_CP044097.1_417086_417566_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|283aa|down_1|NZ_CP044097.1_417682_418531_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_2|NZ_CP044097.1_418541_418919_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|down_3|NZ_CP044097.1_418921_419743_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|down_4|NZ_CP044097.1_419739_420729_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|down_5|NZ_CP044097.1_420728_422015_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|786aa|down_6|NZ_CP044097.1_422068_424426_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|down_7|NZ_CP044097.1_424801_425617_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|down_8|NZ_CP044097.1_425716_426376_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|down_9|NZ_CP044097.1_426387_429294_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	3	507941-508022	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	TTTACGGTATAAACATGCCGGATGGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|888aa|up_9|NZ_CP044097.1_491834_494498_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|630aa|up_8|NZ_CP044097.1_494512_496402_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_7|NZ_CP044097.1_496604_498029_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|264aa|up_6|NZ_CP044097.1_498154_498946_-	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|521aa|up_5|NZ_CP044097.1_498958_500521_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|866aa|up_4|NZ_CP044097.1_500921_503519_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|up_3|NZ_CP044097.1_503695_504058_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|265aa|up_2|NZ_CP044097.1_504091_504886_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|289aa|up_1|NZ_CP044097.1_504901_505768_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|up_0|NZ_CP044097.1_505886_506234_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|797aa|down_0|NZ_CP044097.1_508099_510490_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|179aa|down_1|NZ_CP044097.1_510695_511232_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_2|NZ_CP044097.1_511318_511981_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_3|NZ_CP044097.1_512213_513140_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_4|NZ_CP044097.1_513136_513907_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|147aa|down_5|NZ_CP044097.1_514009_514450_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|372aa|down_6|NZ_CP044097.1_514505_515621_-	PRK15305, PRK15305, fimbrial protein StkG	NA|203aa|down_7|NZ_CP044097.1_515629_516238_-	PRK15262, PRK15262, putative fimbrial protein StaF; Provisional	NA|189aa|down_8|NZ_CP044097.1_516256_516823_-	PRK15263, PRK15263, fimbrial-like protein	NA|211aa|down_9|NZ_CP044097.1_516849_517482_-	PRK15306, PRK15306, fimbrial protein
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	4	1313615-1315630	1,4,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	31,33,33,31	33	TypeI-F	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|323aa|up_9|NZ_CP044097.1_1300359_1301328_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|up_8|NZ_CP044097.1_1301339_1302992_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_7|NZ_CP044097.1_1303137_1304037_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_6|NZ_CP044097.1_1304212_1304908_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_5|NZ_CP044097.1_1305198_1306857_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|372aa|up_4|NZ_CP044097.1_1307005_1308121_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP044097.1_1308117_1310064_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_2|NZ_CP044097.1_1310200_1310422_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_1|NZ_CP044097.1_1310745_1311066_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP044097.1_1311096_1313373_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|326aa|down_0|NZ_CP044097.1_1315743_1316721_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3f|1077aa|down_1|NZ_CP044097.1_1316717_1319948_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|441aa|down_2|NZ_CP044097.1_1319965_1321288_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|down_3|NZ_CP044097.1_1321275_1322211_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NZ_CP044097.1_1322221_1323223_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP044097.1_1323232_1323787_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|226aa|down_6|NZ_CP044097.1_1324158_1324836_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|289aa|down_7|NZ_CP044097.1_1324857_1325724_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|304aa|down_8|NZ_CP044097.1_1325832_1326744_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|73aa|down_9|NZ_CP044097.1_1327297_1327516_-	PRK00276, infA, translation initiation factor IF-1; Validated
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	5	1326889-1327157	2,3,5	CRT,PILER-CR,CRISPRCasFinder	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Type I-F	CGTTCACTGCCGTACAGGCAGCTTAGAAA,CGTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	29,29,28	0	0	NA	NA	I-F:I-F:I-F	4,3,4	4	TypeI-F	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|759aa|up_9|NZ_CP044097.1_1311096_1313373_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|326aa|up_8|NZ_CP044097.1_1315743_1316721_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3f|1077aa|up_7|NZ_CP044097.1_1316717_1319948_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|441aa|up_6|NZ_CP044097.1_1319965_1321288_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|up_5|NZ_CP044097.1_1321275_1322211_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_4|NZ_CP044097.1_1322221_1323223_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_3|NZ_CP044097.1_1323232_1323787_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|226aa|up_2|NZ_CP044097.1_1324158_1324836_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|289aa|up_1|NZ_CP044097.1_1324857_1325724_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|304aa|up_0|NZ_CP044097.1_1325832_1326744_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|73aa|down_0|NZ_CP044097.1_1327297_1327516_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP044097.1_1327800_1328505_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP044097.1_1328549_1330271_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP044097.1_1330271_1332038_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|down_4|NZ_CP044097.1_1332151_1333120_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP044097.1_1333667_1334162_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1307aa|down_6|NZ_CP044097.1_1334296_1338217_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP044097.1_1338339_1338951_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP044097.1_1338961_1340305_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP044097.1_1340396_1341689_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	6	1696495-1696618	6	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA|60aa|up_4|NZ_CP044097.1_1691159_1691339_+,NA|47aa|up_3|NZ_CP044097.1_1691435_1691576_-,NA|30aa|down_6|NZ_CP044097.1_1704057_1704147_+	NA|271aa|up_9|NZ_CP044097.1_1686937_1687750_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|226aa|up_8|NZ_CP044097.1_1687755_1688433_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_7|NZ_CP044097.1_1688422_1689202_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|273aa|up_6|NZ_CP044097.1_1689201_1690020_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|278aa|up_5|NZ_CP044097.1_1690021_1690855_-	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|60aa|up_4|NZ_CP044097.1_1691159_1691339_+	NA	NA|47aa|up_3|NZ_CP044097.1_1691435_1691576_-	NA	NA|301aa|up_2|NZ_CP044097.1_1691711_1692614_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|313aa|up_1|NZ_CP044097.1_1692857_1693796_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|767aa|up_0|NZ_CP044097.1_1693868_1696169_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|458aa|down_0|NZ_CP044097.1_1696776_1698150_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_1|NZ_CP044097.1_1698367_1699009_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP044097.1_1699048_1700197_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|402aa|down_3|NZ_CP044097.1_1700487_1701693_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_CP044097.1_1701805_1702738_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP044097.1_1702734_1703760_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP044097.1_1704057_1704147_+	NA	NA|389aa|down_7|NZ_CP044097.1_1704321_1705488_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP044097.1_1705534_1706116_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|271aa|down_9|NZ_CP044097.1_1706241_1707054_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	7	1943959-1944096	7	CRISPRCasFinder	no	cas3	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Unclear	CGCAGGGAATCACCCTGCTGCTTAAGCTCGCCACGCACG	39	0	0	NA	NA	NA	1	1	Unclear	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA|212aa|down_0|NZ_CP044097.1_1944561_1945197_-	NA|212aa|up_9|NZ_CP044097.1_1931569_1932205_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|303aa|up_8|NZ_CP044097.1_1932333_1933242_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|1301aa|up_7|NZ_CP044097.1_1933250_1937153_-	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|202aa|up_6|NZ_CP044097.1_1937354_1937960_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|290aa|up_5|NZ_CP044097.1_1938022_1938892_-	PRK10376, PRK10376, putative oxidoreductase; Provisional	NA|108aa|up_4|NZ_CP044097.1_1939009_1939333_-	COG3784, COG3784, Uncharacterized protein conserved in bacteria [Function unknown]	NA|61aa|up_3|NZ_CP044097.1_1939340_1939523_-	pfam13617, Lipoprotein_19, YnbE-like lipoprotein	NA|880aa|up_2|NZ_CP044097.1_1939519_1942159_-	PRK10695, PRK10695, YdbH family protein	NA|148aa|up_1|NZ_CP044097.1_1942503_1942947_-	pfam04224, DUF417, Protein of unknown function, DUF417	NA|154aa|up_0|NZ_CP044097.1_1942994_1943456_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|212aa|down_0|NZ_CP044097.1_1944561_1945197_-	NA	NA|330aa|down_1|NZ_CP044097.1_1945985_1946975_+	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains	NA|141aa|down_2|NZ_CP044097.1_1947088_1947511_+	PRK10449, PRK10449, heat shock protein HslJ	NA|89aa|down_3|NZ_CP044097.1_1947507_1947774_-	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|1175aa|down_4|NZ_CP044097.1_1948049_1951574_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|380aa|down_5|NZ_CP044097.1_1951939_1953079_+	PRK10554, PRK10554, outer membrane porin protein C; Provisional	NA|73aa|down_6|NZ_CP044097.1_1953220_1953439_+	pfam13619, KTSC, KTSC domain	NA|145aa|down_7|NZ_CP044097.1_1953514_1953949_+	PRK15005, PRK15005, universal stress protein UspF	NA|312aa|down_8|NZ_CP044097.1_1954168_1955104_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	cas3|458aa|down_9|NZ_CP044097.1_1955185_1956559_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	8	2019708-2019831	8	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	TTTGCCGGATGGCGGCTGCGCCTTATCCGGCCCACAAAACAGTCCG	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA|15aa|down_6|NZ_CP044097.1_2025204_2025249_+	NA|246aa|up_9|NZ_CP044097.1_2007376_2008114_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|390aa|up_8|NZ_CP044097.1_2008303_2009473_-	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	NA|103aa|up_7|NZ_CP044097.1_2009479_2009788_-	COG3771, COG3771, Predicted membrane protein [Function unknown]	NA|252aa|up_6|NZ_CP044097.1_2009947_2010703_-	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional	NA|197aa|up_5|NZ_CP044097.1_2010890_2011481_+	PRK00393, ribA, GTP cyclohydrolase II RibA	NA|892aa|up_4|NZ_CP044097.1_2011533_2014209_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|54aa|up_3|NZ_CP044097.1_2014794_2014956_-	NF000536, YmiA, YmiA family putative membrane protein	NA|325aa|up_2|NZ_CP044097.1_2015259_2016234_-	PRK12681, cysB, HTH-type transcriptional regulator CysB	NA|866aa|up_1|NZ_CP044097.1_2016445_2019043_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|84aa|up_0|NZ_CP044097.1_2019443_2019695_+	PRK11037, PRK11037, hypothetical protein; Provisional	NA|349aa|down_0|NZ_CP044097.1_2019871_2020918_-	PRK11778, PRK11778, putative inner membrane peptidase; Provisional	NA|254aa|down_1|NZ_CP044097.1_2021155_2021917_+	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional	NA|197aa|down_2|NZ_CP044097.1_2021913_2022504_+	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|292aa|down_3|NZ_CP044097.1_2022595_2023471_-	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB	NA|207aa|down_4|NZ_CP044097.1_2023571_2024192_-	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase	NA|290aa|down_5|NZ_CP044097.1_2024199_2025069_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|15aa|down_6|NZ_CP044097.1_2025204_2025249_+	NA	NA|521aa|down_7|NZ_CP044097.1_2025343_2026906_+	PRK13564, PRK13564, anthranilate synthase component 1	NA|532aa|down_8|NZ_CP044097.1_2026905_2028501_+	PRK09522, PRK09522, bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA|453aa|down_9|NZ_CP044097.1_2028504_2029863_+	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	9	3108794-3108918	9	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	GAGCACATTGTAGGCCCGGTAAGCGCAGCGCCACCGGGCATTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA|80aa|up_7|NZ_CP044097.1_3101401_3101641_+,NA|68aa|down_2|NZ_CP044097.1_3112421_3112625_-	NA|571aa|up_9|NZ_CP044097.1_3098173_3099886_+	pfam10592, AIPR, AIPR protein	NA|60aa|up_8|NZ_CP044097.1_3101225_3101405_+	pfam06183, DinI, DinI-like family	NA|80aa|up_7|NZ_CP044097.1_3101401_3101641_+	NA	NA|205aa|up_6|NZ_CP044097.1_3101985_3102600_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|205aa|up_5|NZ_CP044097.1_3103194_3103809_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|230aa|up_4|NZ_CP044097.1_3103805_3104495_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_3|NZ_CP044097.1_3104491_3105034_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|343aa|up_2|NZ_CP044097.1_3105078_3106107_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|400aa|up_1|NZ_CP044097.1_3106212_3107412_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|414aa|up_0|NZ_CP044097.1_3107502_3108744_-	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|332aa|down_0|NZ_CP044097.1_3110000_3110996_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|501aa|down_1|NZ_CP044097.1_3110992_3112495_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|68aa|down_2|NZ_CP044097.1_3112421_3112625_-	NA	NA|514aa|down_3|NZ_CP044097.1_3113000_3114542_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|272aa|down_4|NZ_CP044097.1_3114599_3115415_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|297aa|down_5|NZ_CP044097.1_3115424_3116315_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|635aa|down_6|NZ_CP044097.1_3116330_3118235_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|down_7|NZ_CP044097.1_3118247_3119381_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|down_8|NZ_CP044097.1_3119391_3120420_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|down_9|NZ_CP044097.1_3120431_3121979_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	10	3381014-3381113	10	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	TTTGTAGGCCGGATAAGGCGTTT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA	NA|365aa|up_9|NZ_CP044097.1_3370328_3371423_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|401aa|up_8|NZ_CP044097.1_3371873_3373076_-	PRK08013, PRK08013, oxidoreductase; Provisional	NA|393aa|up_7|NZ_CP044097.1_3373218_3374397_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|439aa|up_6|NZ_CP044097.1_3374393_3375710_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|193aa|up_5|NZ_CP044097.1_3375744_3376323_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|110aa|up_4|NZ_CP044097.1_3376489_3376819_+	PRK10972, PRK10972, cell division protein ZapA	NA|201aa|up_3|NZ_CP044097.1_3377064_3377667_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|411aa|up_2|NZ_CP044097.1_3377755_3378988_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|232aa|up_1|NZ_CP044097.1_3379256_3379952_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|298aa|up_0|NZ_CP044097.1_3380074_3380968_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|243aa|down_0|NZ_CP044097.1_3381122_3381851_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|212aa|down_1|NZ_CP044097.1_3381944_3382580_-	PRK09304, PRK09304, arginine exporter ArgO	NA|286aa|down_2|NZ_CP044097.1_3382783_3383641_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|311aa|down_3|NZ_CP044097.1_3383770_3384703_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|291aa|down_4|NZ_CP044097.1_3384620_3385493_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|421aa|down_5|NZ_CP044097.1_3385587_3386850_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|554aa|down_6|NZ_CP044097.1_3386866_3388528_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|408aa|down_7|NZ_CP044097.1_3388541_3389765_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|302aa|down_8|NZ_CP044097.1_3390102_3391008_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|360aa|down_9|NZ_CP044097.1_3391142_3392222_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	11	3551305-3551388	11	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	GTAGGCCGGATAAGATGCGCCAGC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA,NA|354aa|down_5|NZ_CP044097.1_3558270_3559332_+	NA|169aa|up_9|NZ_CP044097.1_3537148_3537655_-	PRK10201, PRK10201, G/U mismatch-specific DNA glycosylase	NA|108aa|up_8|NZ_CP044097.1_3537975_3538299_-	pfam08986, DUF1889, Domain of unknown function (DUF1889)	NA|642aa|up_7|NZ_CP044097.1_3539016_3540942_-	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional	NA|366aa|up_6|NZ_CP044097.1_3541047_3542145_-	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|553aa|up_5|NZ_CP044097.1_3542739_3544398_+	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent	NA|259aa|up_4|NZ_CP044097.1_3544457_3545234_-	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism]	NA|187aa|up_3|NZ_CP044097.1_3545473_3546034_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|522aa|up_2|NZ_CP044097.1_3546030_3547596_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|507aa|up_1|NZ_CP044097.1_3547923_3549444_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|497aa|up_0|NZ_CP044097.1_3549764_3551255_+	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|111aa|down_0|NZ_CP044097.1_3551405_3551738_-	PRK10089, PRK10089, chaperone CsaA	NA|328aa|down_1|NZ_CP044097.1_3551957_3552941_+	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|1031aa|down_2|NZ_CP044097.1_3553148_3556241_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|150aa|down_3|NZ_CP044097.1_3556237_3556687_+	PRK10202, ebgC, beta-galactosidase subunit beta	NA|478aa|down_4|NZ_CP044097.1_3556754_3558188_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|354aa|down_5|NZ_CP044097.1_3558270_3559332_+	NA	NA|784aa|down_6|NZ_CP044097.1_3559348_3561700_+	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|673aa|down_7|NZ_CP044097.1_3562052_3564071_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|379aa|down_8|NZ_CP044097.1_3564162_3565299_-	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|168aa|down_9|NZ_CP044097.1_3565385_3565889_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]
GCF_008693945.1_ASM869394v1	NZ_CP044097	Citrobacter koseri strain FDAARGOS_646 chromosome, complete genome	12	3569792-3569917	12	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	Orphan	AGGCCGGATAAGACGTTTACGTCGCCATCCGGCATTTTT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	NA|354aa|up_7|NZ_CP044097.1_3558270_3559332_+,NA	NA|150aa|up_9|NZ_CP044097.1_3556237_3556687_+	PRK10202, ebgC, beta-galactosidase subunit beta	NA|478aa|up_8|NZ_CP044097.1_3556754_3558188_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|354aa|up_7|NZ_CP044097.1_3558270_3559332_+	NA	NA|784aa|up_6|NZ_CP044097.1_3559348_3561700_+	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|673aa|up_5|NZ_CP044097.1_3562052_3564071_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|379aa|up_4|NZ_CP044097.1_3564162_3565299_-	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|168aa|up_3|NZ_CP044097.1_3565385_3565889_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|329aa|up_2|NZ_CP044097.1_3565958_3566945_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|323aa|up_1|NZ_CP044097.1_3567269_3568238_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|415aa|up_0|NZ_CP044097.1_3568492_3569737_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|471aa|down_0|NZ_CP044097.1_3571419_3572832_-	pfam02614, UxaC, Glucuronate isomerase	NA|434aa|down_1|NZ_CP044097.1_3573304_3574606_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|259aa|down_2|NZ_CP044097.1_3574748_3575525_+	PRK11523, PRK11523, transcriptional regulator ExuR	NA|221aa|down_3|NZ_CP044097.1_3575874_3576537_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|128aa|down_4|NZ_CP044097.1_3576540_3576924_+	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA	NA|123aa|down_5|NZ_CP044097.1_3577071_3577440_+	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|102aa|down_6|NZ_CP044097.1_3577481_3577787_+	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_7|NZ_CP044097.1_3577789_3578188_+	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|100aa|down_8|NZ_CP044097.1_3578184_3578484_+	pfam13997, YqjK, YqjK-like protein	NA|332aa|down_9|NZ_CP044097.1_3579222_3580218_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
