assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	1	1222907-1223044	1	PILER-CR	no		csa3,DEDDh,cas3,DinG	Orphan	GTGTTTCACGTGAAACAAC	19	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|144aa|up_9|NZ_CP044089.1_1213148_1213580_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|178aa|up_8|NZ_CP044089.1_1213643_1214177_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|127aa|up_7|NZ_CP044089.1_1214186_1214567_-	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|397aa|up_6|NZ_CP044089.1_1214805_1215996_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|334aa|up_5|NZ_CP044089.1_1216591_1217593_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|306aa|up_4|NZ_CP044089.1_1217585_1218503_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|269aa|up_3|NZ_CP044089.1_1218546_1219353_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|266aa|up_2|NZ_CP044089.1_1219359_1220157_-	pfam13614, AAA_31, AAA domain	NA|231aa|up_1|NZ_CP044089.1_1220153_1220846_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|640aa|up_0|NZ_CP044089.1_1220842_1222762_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|69aa|down_0|NZ_CP044089.1_1224553_1224760_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|398aa|down_1|NZ_CP044089.1_1225132_1226326_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|508aa|down_2|NZ_CP044089.1_1226401_1227925_-	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|146aa|down_3|NZ_CP044089.1_1227921_1228359_-	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|335aa|down_4|NZ_CP044089.1_1228463_1229468_-	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|472aa|down_5|NZ_CP044089.1_1229588_1231004_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|227aa|down_6|NZ_CP044089.1_1231038_1231719_-	PRK15479, PRK15479, transcriptional regulator TctD	NA|425aa|down_7|NZ_CP044089.1_1232276_1233551_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|451aa|down_8|NZ_CP044089.1_1233495_1234848_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|529aa|down_9|NZ_CP044089.1_1234964_1236551_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	2	1650346-1650431	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	AGGTGCCTGTCCCGGCGGGGACAG	24	1	6	1650370-1650407|1650370-1650407|1650370-1650407|1650370-1650407|1650370-1650407|1650370-1650407	NZ_CP044089.1_515997-515960|NZ_CP044089.1_1744004-1743967|NZ_CP044089.1_4598786-4598749|NZ_CP044089.1_3803866-3803829|NZ_CP044089.1_2774617-2774654|NZ_CP044089.1_4778210-4778247	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|79aa|up_8|NZ_CP044089.1_1641441_1641678_-,NA	NA|543aa|up_9|NZ_CP044089.1_1639516_1641145_-	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|79aa|up_8|NZ_CP044089.1_1641441_1641678_-	NA	NA|287aa|up_7|NZ_CP044089.1_1641805_1642666_-	cd01171, YXKO-related, B	NA|274aa|up_6|NZ_CP044089.1_1642754_1643576_+	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|246aa|up_5|NZ_CP044089.1_1643655_1644393_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|331aa|up_4|NZ_CP044089.1_1644389_1645382_-	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|221aa|up_3|NZ_CP044089.1_1645495_1646158_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|383aa|up_2|NZ_CP044089.1_1646202_1647351_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|410aa|up_1|NZ_CP044089.1_1647463_1648693_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|505aa|up_0|NZ_CP044089.1_1648776_1650291_+	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|327aa|down_0|NZ_CP044089.1_1650579_1651560_-	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|168aa|down_1|NZ_CP044089.1_1652074_1652578_+	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily	NA|592aa|down_2|NZ_CP044089.1_1652620_1654396_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|310aa|down_3|NZ_CP044089.1_1654442_1655372_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|245aa|down_4|NZ_CP044089.1_1655378_1656113_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|387aa|down_5|NZ_CP044089.1_1656109_1657270_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|265aa|down_6|NZ_CP044089.1_1657286_1658081_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|197aa|down_7|NZ_CP044089.1_1658370_1658961_+	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]	NA|443aa|down_8|NZ_CP044089.1_1658994_1660323_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|382aa|down_9|NZ_CP044089.1_1660397_1661543_-	cd19988, PBP1_ABC_HAAT-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	3	1989329-1989422	2	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|540aa|up_9|NZ_CP044089.1_1980712_1982332_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|103aa|up_8|NZ_CP044089.1_1982291_1982600_-	pfam04138, GtrA, GtrA-like protein	NA|368aa|up_7|NZ_CP044089.1_1982519_1983623_+	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|152aa|up_6|NZ_CP044089.1_1983619_1984075_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|308aa|up_5|NZ_CP044089.1_1984080_1985004_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|220aa|up_4|NZ_CP044089.1_1985093_1985753_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|305aa|up_3|NZ_CP044089.1_1985749_1986664_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|467aa|up_2|NZ_CP044089.1_1986852_1988253_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP044089.1_1988352_1988697_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_CP044089.1_1988785_1989256_+	pfam00582, Usp, Universal stress protein family	NA|708aa|down_0|NZ_CP044089.1_1989619_1991743_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|173aa|down_1|NZ_CP044089.1_1991739_1992258_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|252aa|down_2|NZ_CP044089.1_1992368_1993124_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|411aa|down_3|NZ_CP044089.1_1993320_1994553_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|262aa|down_4|NZ_CP044089.1_1994545_1995331_+	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|324aa|down_5|NZ_CP044089.1_1995397_1996369_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|326aa|down_6|NZ_CP044089.1_1996379_1997357_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|387aa|down_7|NZ_CP044089.1_1997494_1998655_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|343aa|down_8|NZ_CP044089.1_1998681_1999710_+	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|398aa|down_9|NZ_CP044089.1_1999776_2000970_+	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	4	2346947-2347028	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|102aa|up_9|NZ_CP044089.1_2337070_2337376_-,NA|81aa|up_4|NZ_CP044089.1_2342374_2342617_+,NA|125aa|down_1|NZ_CP044089.1_2350213_2350588_+	NA|102aa|up_9|NZ_CP044089.1_2337070_2337376_-	NA	NA|554aa|up_8|NZ_CP044089.1_2337451_2339113_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|300aa|up_7|NZ_CP044089.1_2339128_2340028_-	PRK02155, ppnK, NAD kinase	NA|335aa|up_6|NZ_CP044089.1_2340142_2341147_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|363aa|up_5|NZ_CP044089.1_2341204_2342293_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|81aa|up_4|NZ_CP044089.1_2342374_2342617_+	NA	NA|185aa|up_3|NZ_CP044089.1_2342758_2343313_+	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|127aa|up_2|NZ_CP044089.1_2343320_2343701_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|642aa|up_1|NZ_CP044089.1_2343791_2345717_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|374aa|up_0|NZ_CP044089.1_2345817_2346939_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|917aa|down_0|NZ_CP044089.1_2347129_2349880_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|125aa|down_1|NZ_CP044089.1_2350213_2350588_+	NA	NA|185aa|down_2|NZ_CP044089.1_2350625_2351180_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|391aa|down_3|NZ_CP044089.1_2351183_2352356_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_4|NZ_CP044089.1_2352377_2353265_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|118aa|down_5|NZ_CP044089.1_2353425_2353779_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|121aa|down_6|NZ_CP044089.1_2353791_2354154_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|142aa|down_7|NZ_CP044089.1_2354204_2354630_-	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|419aa|down_8|NZ_CP044089.1_2354832_2356089_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|327aa|down_9|NZ_CP044089.1_2356287_2357268_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	5	3424844-3424927	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGTGCCTGTCCCGGCGGGGACAG	23	1	2	3424867-3424903|3424867-3424903	NZ_CP044089.1_434416-434380|NZ_CP044089.1_2178316-2178352	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA|99aa|down_1|NZ_CP044089.1_3426625_3426922_+	NA|275aa|up_9|NZ_CP044089.1_3414731_3415556_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|325aa|up_8|NZ_CP044089.1_3415507_3416482_-	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|354aa|up_7|NZ_CP044089.1_3416510_3417572_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|738aa|up_6|NZ_CP044089.1_3417568_3419782_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|153aa|up_5|NZ_CP044089.1_3419795_3420254_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|115aa|up_4|NZ_CP044089.1_3420411_3420756_-	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family	NA|302aa|up_3|NZ_CP044089.1_3420912_3421818_+	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|338aa|up_2|NZ_CP044089.1_3421903_3422917_+	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]	NA|373aa|up_1|NZ_CP044089.1_3422924_3424043_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|215aa|up_0|NZ_CP044089.1_3424128_3424773_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|451aa|down_0|NZ_CP044089.1_3425098_3426451_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|99aa|down_1|NZ_CP044089.1_3426625_3426922_+	NA	NA|126aa|down_2|NZ_CP044089.1_3426946_3427324_+	pfam10861, DUF2784, Protein of Unknown function (DUF2784)	NA|232aa|down_3|NZ_CP044089.1_3427364_3428060_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|494aa|down_4|NZ_CP044089.1_3428070_3429552_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|237aa|down_5|NZ_CP044089.1_3429628_3430339_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|309aa|down_6|NZ_CP044089.1_3430465_3431392_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|112aa|down_7|NZ_CP044089.1_3431394_3431730_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|421aa|down_8|NZ_CP044089.1_3431784_3433047_-	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed	NA|461aa|down_9|NZ_CP044089.1_3433076_3434459_-	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	6	3425024-3425085	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGTGCCTGTCCCGGCGGGGACAG	23	1	1	3425047-3425062	NZ_CP044089.1_3425008-3425023	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA|99aa|down_1|NZ_CP044089.1_3426625_3426922_+	NA|275aa|up_9|NZ_CP044089.1_3414731_3415556_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|325aa|up_8|NZ_CP044089.1_3415507_3416482_-	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|354aa|up_7|NZ_CP044089.1_3416510_3417572_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|738aa|up_6|NZ_CP044089.1_3417568_3419782_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|153aa|up_5|NZ_CP044089.1_3419795_3420254_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|115aa|up_4|NZ_CP044089.1_3420411_3420756_-	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family	NA|302aa|up_3|NZ_CP044089.1_3420912_3421818_+	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|338aa|up_2|NZ_CP044089.1_3421903_3422917_+	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]	NA|373aa|up_1|NZ_CP044089.1_3422924_3424043_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|215aa|up_0|NZ_CP044089.1_3424128_3424773_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|451aa|down_0|NZ_CP044089.1_3425098_3426451_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|99aa|down_1|NZ_CP044089.1_3426625_3426922_+	NA	NA|126aa|down_2|NZ_CP044089.1_3426946_3427324_+	pfam10861, DUF2784, Protein of Unknown function (DUF2784)	NA|232aa|down_3|NZ_CP044089.1_3427364_3428060_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|494aa|down_4|NZ_CP044089.1_3428070_3429552_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|237aa|down_5|NZ_CP044089.1_3429628_3430339_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|309aa|down_6|NZ_CP044089.1_3430465_3431392_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|112aa|down_7|NZ_CP044089.1_3431394_3431730_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|421aa|down_8|NZ_CP044089.1_3431784_3433047_-	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed	NA|461aa|down_9|NZ_CP044089.1_3433076_3434459_-	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	7	3652106-3652198	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	CGGTGCCTGTCCCCGCGGGGACAGGCACCCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|391aa|up_9|NZ_CP044089.1_3642977_3644150_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|298aa|up_8|NZ_CP044089.1_3644197_3645091_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|146aa|up_7|NZ_CP044089.1_3645136_3645574_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|230aa|up_6|NZ_CP044089.1_3645633_3646323_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|339aa|up_5|NZ_CP044089.1_3646331_3647348_-	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|349aa|up_4|NZ_CP044089.1_3647514_3648561_+	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|209aa|up_3|NZ_CP044089.1_3648557_3649184_+	PRK00698, tmk, thymidylate kinase; Validated	NA|351aa|up_2|NZ_CP044089.1_3649180_3650233_+	PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated	NA|257aa|up_1|NZ_CP044089.1_3650282_3651053_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|279aa|up_0|NZ_CP044089.1_3651103_3651940_+	sd00045, ANK, ankyrin repeats	NA|246aa|down_0|NZ_CP044089.1_3652405_3653143_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|248aa|down_1|NZ_CP044089.1_3653218_3653962_+	cd00994, PBP2_GlnH, Glutamine binding domain of ABC-type transporter; the type 2 periplasmic binding protein fold	NA|223aa|down_2|NZ_CP044089.1_3653958_3654627_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|258aa|down_3|NZ_CP044089.1_3654623_3655397_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|318aa|down_4|NZ_CP044089.1_3655393_3656347_+	PRK13772, PRK13772, formimidoylglutamase; Provisional	NA|430aa|down_5|NZ_CP044089.1_3656539_3657829_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|499aa|down_6|NZ_CP044089.1_3657904_3659401_-	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like	NA|416aa|down_7|NZ_CP044089.1_3659450_3660698_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|570aa|down_8|NZ_CP044089.1_3660707_3662417_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|313aa|down_9|NZ_CP044089.1_3662413_3663352_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	8	3896822-3896894	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGTGCCTGTCCCGGCGGGGACAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|403aa|up_9|NZ_CP044089.1_3888799_3890008_+	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|272aa|up_8|NZ_CP044089.1_3890020_3890836_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|174aa|up_7|NZ_CP044089.1_3890969_3891491_-	pfam08808, RES, RES domain	NA|166aa|up_6|NZ_CP044089.1_3891487_3891985_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|126aa|up_5|NZ_CP044089.1_3892132_3892510_+	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|295aa|up_4|NZ_CP044089.1_3892506_3893391_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|213aa|up_3|NZ_CP044089.1_3893403_3894042_-	cd03188, GST_C_Beta, C-terminal, alpha helical domain of Class Beta Glutathione S-transferases	NA|391aa|up_2|NZ_CP044089.1_3894038_3895211_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|205aa|up_1|NZ_CP044089.1_3895335_3895950_+	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|248aa|up_0|NZ_CP044089.1_3896066_3896810_+	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase	NA|234aa|down_0|NZ_CP044089.1_3896964_3897666_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|256aa|down_1|NZ_CP044089.1_3897666_3898434_-	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	NA|413aa|down_2|NZ_CP044089.1_3898430_3899669_-	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|309aa|down_3|NZ_CP044089.1_3899668_3900595_-	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|372aa|down_4|NZ_CP044089.1_3900697_3901813_-	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein	NA|194aa|down_5|NZ_CP044089.1_3902083_3902665_-	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|278aa|down_6|NZ_CP044089.1_3902661_3903495_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|438aa|down_7|NZ_CP044089.1_3903705_3905019_+	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|294aa|down_8|NZ_CP044089.1_3905194_3906076_+	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA	NA|284aa|down_9|NZ_CP044089.1_3906095_3906947_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	9	4092523-4092608	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGTGCCTGTCCCGGCGGGAACAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|363aa|up_9|NZ_CP044089.1_4082653_4083742_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|361aa|up_8|NZ_CP044089.1_4083741_4084824_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|270aa|up_7|NZ_CP044089.1_4084928_4085738_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|535aa|up_6|NZ_CP044089.1_4085777_4087382_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|230aa|up_5|NZ_CP044089.1_4087396_4088086_-	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|294aa|up_4|NZ_CP044089.1_4088167_4089049_+	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|146aa|up_3|NZ_CP044089.1_4089107_4089545_+	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|324aa|up_2|NZ_CP044089.1_4089635_4090607_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|315aa|up_1|NZ_CP044089.1_4090645_4091590_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|270aa|up_0|NZ_CP044089.1_4091685_4092495_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|125aa|down_0|NZ_CP044089.1_4092674_4093049_-	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|231aa|down_1|NZ_CP044089.1_4093155_4093848_-	pfam09997, DUF2238, Predicted membrane protein (DUF2238)	NA|139aa|down_2|NZ_CP044089.1_4093840_4094257_-	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|211aa|down_3|NZ_CP044089.1_4094367_4095000_+	TIGR04508, queE_Cx14CxxC, 7-carboxy-7-deazaguanine synthase, Cx14CxxC type	NA|148aa|down_4|NZ_CP044089.1_4095028_4095472_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|364aa|down_5|NZ_CP044089.1_4095493_4096585_-	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|267aa|down_6|NZ_CP044089.1_4096639_4097440_-	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional	NA|207aa|down_7|NZ_CP044089.1_4097575_4098196_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|158aa|down_8|NZ_CP044089.1_4098447_4098921_+	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|682aa|down_9|NZ_CP044089.1_4098917_4100963_+	pfam04632, FUSC, Fusaric acid resistance protein family
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	10	4541903-4542002	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	CAGGATTCGGCAGGTGCCTGTCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|435aa|up_9|NZ_CP044089.1_4525528_4526833_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|797aa|up_8|NZ_CP044089.1_4526903_4529294_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|400aa|up_7|NZ_CP044089.1_4529303_4530503_+	PRK09052, PRK09052, acetyl-CoA C-acyltransferase	NA|183aa|up_6|NZ_CP044089.1_4530499_4531048_+	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|558aa|up_5|NZ_CP044089.1_4531056_4532730_+	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	NA|522aa|up_4|NZ_CP044089.1_4532751_4534317_-	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase	NA|322aa|up_3|NZ_CP044089.1_4534333_4535299_-	cd13579, PBP2_Bug_NagM, Uncharacterized NagM-like protein of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|176aa|up_2|NZ_CP044089.1_4535392_4535920_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|703aa|up_1|NZ_CP044089.1_4536053_4538162_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|469aa|up_0|NZ_CP044089.1_4538172_4539579_-	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|206aa|down_0|NZ_CP044089.1_4542030_4542648_-	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|344aa|down_1|NZ_CP044089.1_4542663_4543695_-	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|274aa|down_2|NZ_CP044089.1_4543722_4544544_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|251aa|down_3|NZ_CP044089.1_4544562_4545315_-	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|384aa|down_4|NZ_CP044089.1_4545615_4546767_+	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|174aa|down_5|NZ_CP044089.1_4546843_4547365_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|950aa|down_6|NZ_CP044089.1_4547361_4550211_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|258aa|down_7|NZ_CP044089.1_4550302_4551076_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|259aa|down_8|NZ_CP044089.1_4551072_4551849_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|650aa|down_9|NZ_CP044089.1_4551845_4553795_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	11	4585917-4586016	10	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GTGGCTCGGTTGCAGGTGCCTGTCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA,NA	NA|213aa|up_9|NZ_CP044089.1_4578046_4578685_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|256aa|up_8|NZ_CP044089.1_4578772_4579540_-	PRK06138, PRK06138, SDR family oxidoreductase	NA|268aa|up_7|NZ_CP044089.1_4579554_4580358_-	PRK13301, PRK13301, putative L-aspartate dehydrogenase; Provisional	NA|270aa|up_6|NZ_CP044089.1_4580354_4581164_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|328aa|up_5|NZ_CP044089.1_4581160_4582144_-	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|423aa|up_4|NZ_CP044089.1_4582172_4583441_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|175aa|up_3|NZ_CP044089.1_4583443_4583968_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|314aa|up_2|NZ_CP044089.1_4583964_4584906_-	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated	NA|105aa|up_1|NZ_CP044089.1_4584915_4585230_-	pfam07978, NIPSNAP, NIPSNAP	NA|167aa|up_0|NZ_CP044089.1_4585271_4585772_-	cd06991, cupin_TcmJ-like, TcmJ monooxygenase and related proteins, cupin domain	NA|431aa|down_0|NZ_CP044089.1_4586263_4587556_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|345aa|down_1|NZ_CP044089.1_4587628_4588663_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|322aa|down_2|NZ_CP044089.1_4588723_4589689_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|215aa|down_3|NZ_CP044089.1_4589725_4590370_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|486aa|down_4|NZ_CP044089.1_4590389_4591847_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|228aa|down_5|NZ_CP044089.1_4592086_4592770_+	sd00006, TPR, Tetratricopeptide repeat	NA|170aa|down_6|NZ_CP044089.1_4592898_4593408_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|259aa|down_7|NZ_CP044089.1_4593400_4594177_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|288aa|down_8|NZ_CP044089.1_4594384_4595248_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|529aa|down_9|NZ_CP044089.1_4595272_4596859_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	12	4928325-4928452	11	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	TGGGGAGCGAAGGGTGCCTGTCCCCGCCGGGACAGGCACTTCCGTCCTG	49	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|239aa|up_9|NZ_CP044089.1_4914463_4915180_-,NA	NA|239aa|up_9|NZ_CP044089.1_4914463_4915180_-	NA	NA|474aa|up_8|NZ_CP044089.1_4915444_4916866_+	PRK10637, cysG, siroheme synthase CysG	NA|916aa|up_7|NZ_CP044089.1_4916932_4919680_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|214aa|up_6|NZ_CP044089.1_4920273_4920915_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|479aa|up_5|NZ_CP044089.1_4921005_4922442_-	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|358aa|up_4|NZ_CP044089.1_4922599_4923673_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|379aa|up_3|NZ_CP044089.1_4923669_4924806_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|115aa|up_2|NZ_CP044089.1_4924951_4925296_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|627aa|up_1|NZ_CP044089.1_4925362_4927243_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|312aa|up_0|NZ_CP044089.1_4927292_4928228_+	PRK13022, secF, protein translocase subunit SecF	NA|243aa|down_0|NZ_CP044089.1_4928509_4929238_-	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|476aa|down_1|NZ_CP044089.1_4929394_4930822_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|341aa|down_2|NZ_CP044089.1_4930818_4931841_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|158aa|down_3|NZ_CP044089.1_4931830_4932304_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|301aa|down_4|NZ_CP044089.1_4932429_4933332_+	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|548aa|down_5|NZ_CP044089.1_4933328_4934972_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|336aa|down_6|NZ_CP044089.1_4934968_4935976_-	cd19102, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|233aa|down_7|NZ_CP044089.1_4936998_4937697_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|462aa|down_8|NZ_CP044089.1_4937693_4939079_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|331aa|down_9|NZ_CP044089.1_4939108_4940101_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold
GCF_008693665.1_ASM869366v1	NZ_CP044089	Bordetella bronchiseptica strain FDAARGOS_634 chromosome, complete genome	13	5052341-5052415	12	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG	Orphan	GGGACAGGCACCGTGCAGCGCAGCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG	NA|111aa|up_4|NZ_CP044089.1_5047646_5047979_-,NA|97aa|down_5|NZ_CP044089.1_5056852_5057143_+	NA|309aa|up_9|NZ_CP044089.1_5041008_5041935_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|118aa|up_8|NZ_CP044089.1_5041957_5042311_-	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|258aa|up_7|NZ_CP044089.1_5042626_5043400_+	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|345aa|up_6|NZ_CP044089.1_5043413_5044448_+	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|1054aa|up_5|NZ_CP044089.1_5044474_5047636_+	PRK14991, PRK14991, tetrathionate reductase subunit TtrA	NA|111aa|up_4|NZ_CP044089.1_5047646_5047979_-	NA	NA|474aa|up_3|NZ_CP044089.1_5048170_5049592_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|49aa|up_2|NZ_CP044089.1_5049608_5049755_-	pfam10617, DUF2474, Protein of unknown function (DUF2474)	NA|336aa|up_1|NZ_CP044089.1_5049765_5050773_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|463aa|up_0|NZ_CP044089.1_5050774_5052163_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|389aa|down_0|NZ_CP044089.1_5052502_5053669_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|168aa|down_1|NZ_CP044089.1_5053836_5054340_+	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|220aa|down_2|NZ_CP044089.1_5054441_5055101_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|359aa|down_3|NZ_CP044089.1_5055159_5056236_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|208aa|down_4|NZ_CP044089.1_5056232_5056856_+	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|97aa|down_5|NZ_CP044089.1_5056852_5057143_+	NA	NA|176aa|down_6|NZ_CP044089.1_5057180_5057708_+	cd12108, Hr-like, Hemerythrin-like domain	NA|140aa|down_7|NZ_CP044089.1_5057940_5058360_+	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related	NA|207aa|down_8|NZ_CP044089.1_5058410_5059031_+	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|341aa|down_9|NZ_CP044089.1_5059065_5060088_+	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold
