assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008693385.1_ASM869338v1	NZ_CP044065	Cupriavidus pauculus strain FDAARGOS_664 chromosome 1, complete sequence	1	1863964-1864051	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	CCCTCACCCCCGGCCCCTCTCCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA,NA|104aa|down_0|NZ_CP044065.1_1864090_1864402_-	NA|366aa|up_9|NZ_CP044065.1_1853247_1854345_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|265aa|up_8|NZ_CP044065.1_1854425_1855220_-	cd03080, GST_N_Metaxin_like, GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs	NA|634aa|up_7|NZ_CP044065.1_1855231_1857133_-	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|159aa|up_6|NZ_CP044065.1_1857215_1857692_-	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes	NA|439aa|up_5|NZ_CP044065.1_1857920_1859237_+	PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|274aa|up_4|NZ_CP044065.1_1859236_1860058_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|437aa|up_3|NZ_CP044065.1_1860085_1861396_-	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed	NA|201aa|up_2|NZ_CP044065.1_1861486_1862089_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|131aa|up_1|NZ_CP044065.1_1862085_1862478_+	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|478aa|up_0|NZ_CP044065.1_1862496_1863930_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|104aa|down_0|NZ_CP044065.1_1864090_1864402_-	NA	NA|482aa|down_1|NZ_CP044065.1_1864422_1865868_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|294aa|down_2|NZ_CP044065.1_1865926_1866808_-	cd00887, MoeA, MoeA family	NA|168aa|down_3|NZ_CP044065.1_1866817_1867321_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|290aa|down_4|NZ_CP044065.1_1867336_1868206_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|771aa|down_5|NZ_CP044065.1_1868339_1870652_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|408aa|down_6|NZ_CP044065.1_1870831_1872055_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|530aa|down_7|NZ_CP044065.1_1872172_1873762_-	COG3904, COG3904, Predicted periplasmic protein [Function unknown]	NA|315aa|down_8|NZ_CP044065.1_1873993_1874938_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|452aa|down_9|NZ_CP044065.1_1874978_1876334_+	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
GCF_008693385.1_ASM869338v1	NZ_CP044067	Cupriavidus pauculus strain FDAARGOS_664 chromosome 2, complete sequence	1	1253024-1253114	1	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,csa3	Unclear	AAAACAGTAGATTTTCTATACCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA|108aa|up_7|NZ_CP044067.1_1243118_1243442_+,NA|91aa|up_3|NZ_CP044067.1_1247073_1247346_-,NA|180aa|down_9|NZ_CP044067.1_1266772_1267312_+	NA|616aa|up_9|NZ_CP044067.1_1233726_1235574_+	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]	DEDDh|536aa|up_8|NZ_CP044067.1_1241306_1242914_+	PRK10545, PRK10545, excinuclease Cho	NA|108aa|up_7|NZ_CP044067.1_1243118_1243442_+	NA	NA|588aa|up_6|NZ_CP044067.1_1243438_1245202_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|up_5|NZ_CP044067.1_1245426_1246113_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|261aa|up_4|NZ_CP044067.1_1246154_1246937_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|91aa|up_3|NZ_CP044067.1_1247073_1247346_-	NA	NA|755aa|up_2|NZ_CP044067.1_1247851_1250116_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|417aa|up_1|NZ_CP044067.1_1250606_1251857_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|343aa|up_0|NZ_CP044067.1_1251943_1252972_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|319aa|down_0|NZ_CP044067.1_1253195_1254152_-	pfam11790, Glyco_hydro_cc, Glycosyl hydrolase catalytic core	NA|802aa|down_1|NZ_CP044067.1_1254247_1256653_-	pfam06537, DHOR, Di-haem oxidoreductase, putative peroxidase	NA|220aa|down_2|NZ_CP044067.1_1256938_1257598_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|474aa|down_3|NZ_CP044067.1_1257732_1259154_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|1229aa|down_4|NZ_CP044067.1_1259179_1262866_-	PLN02666, PLN02666, 5-oxoprolinase	NA|300aa|down_5|NZ_CP044067.1_1263074_1263974_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|266aa|down_6|NZ_CP044067.1_1264188_1264986_+	PRK05463, PRK05463, putative hydro-lyase	NA|430aa|down_7|NZ_CP044067.1_1265006_1266296_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|71aa|down_8|NZ_CP044067.1_1266321_1266534_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|180aa|down_9|NZ_CP044067.1_1266772_1267312_+	NA
GCF_008693385.1_ASM869338v1	NZ_CP044067	Cupriavidus pauculus strain FDAARGOS_664 chromosome 2, complete sequence	2	2996361-2996556	2	CRISPRCasFinder	no		DinG,DEDDh,csa3	Orphan	CGCCGCCGTTGAGCGTGTCGTTGCC	25	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3	NA,NA	NA|317aa|up_9|NZ_CP044067.1_2983916_2984867_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|315aa|up_8|NZ_CP044067.1_2984827_2985772_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|132aa|up_7|NZ_CP044067.1_2985877_2986273_+	pfam14552, Tautomerase_2, Tautomerase enzyme	NA|252aa|up_6|NZ_CP044067.1_2986307_2987063_+	PRK10538, PRK10538, bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA|228aa|up_5|NZ_CP044067.1_2987267_2987951_+	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|317aa|up_4|NZ_CP044067.1_2987947_2988898_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|734aa|up_3|NZ_CP044067.1_2988901_2991103_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|391aa|up_2|NZ_CP044067.1_2991161_2992334_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|743aa|up_1|NZ_CP044067.1_2992330_2994559_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|452aa|up_0|NZ_CP044067.1_2994569_2995925_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|400aa|down_0|NZ_CP044067.1_3007666_3008866_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|170aa|down_1|NZ_CP044067.1_3008895_3009405_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|339aa|down_2|NZ_CP044067.1_3009553_3010570_+	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional	NA|326aa|down_3|NZ_CP044067.1_3010613_3011591_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|384aa|down_4|NZ_CP044067.1_3011631_3012783_-	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|332aa|down_5|NZ_CP044067.1_3012991_3013987_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|241aa|down_6|NZ_CP044067.1_3014069_3014792_-	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	NA|228aa|down_7|NZ_CP044067.1_3014788_3015472_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|357aa|down_8|NZ_CP044067.1_3015468_3016539_-	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family	NA|611aa|down_9|NZ_CP044067.1_3016642_3018475_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
