The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044064	Yersinia pseudotuberculosis strain FDAARGOS_665 chromosome, complete genome	4367018	301020	376421	4367018	plate,transposase	Yellowstone_lake_phycodnavirus(25.0%)	59	NA	NA
WP_002210478.1|301020_301464_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_038825529.1|301496_303341_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_012105683.1|303333_304317_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_072080720.1|304319_306923_+	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	28.7	1.9e-77
WP_011191715.1|307026_309375_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.9	2.1e-14
WP_038824562.1|309387_311607_+	DUF2169 domain-containing protein	NA	NA	NA	NA	NA
WP_002214739.1|311632_312736_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002210473.1|312728_313346_+	DUF3540 domain-containing protein	NA	NA	NA	NA	NA
WP_038824563.1|313351_313717_+	DUF4150 domain-containing protein	NA	NA	NA	NA	NA
WP_012304592.1|313709_314201_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002210470.1|314302_315658_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_038824565.1|320781_321135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011191719.1|321390_324297_-	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.1	6.8e-23
WP_002210466.1|324757_327127_-	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	25.5	1.5e-31
WP_038824617.1|327322_328090_+	DedA family protein	NA	NA	NA	NA	NA
WP_038824616.1|328158_328869_-	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	34.1	1.3e-20
WP_016582381.1|328855_330463_-	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA	NA
WP_024063117.1|330438_331431_-	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA	NA
WP_024063118.1|332076_333579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413474.1|333823_333955_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011191725.1|334501_336163_-	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA	NA
WP_002224086.1|336616_337798_+	MFS transporter	NA	NA	NA	NA	NA
WP_002210456.1|338038_338641_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_038824615.1|338655_340086_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_038824614.1|340087_341179_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_002210453.1|341181_342744_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_012413476.1|343090_343282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002216434.1|343958_344915_+	transcriptional regulator LeuO	NA	NA	NA	NA	NA
WP_002216435.1|345238_345445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002216437.1|345441_347247_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.2	3.5e-38
WP_032467132.1|347277_347388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002228103.1|347706_349434_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	7.8e-59
WP_002210448.1|349436_349931_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002217242.1|350196_350313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011191729.1|350379_351390_+	catabolite repressor/activator	NA	NA	NA	NA	NA
WP_072080719.1|351520_351967_-	L-alanine exporter AlaE	NA	NA	NA	NA	NA
WP_087768171.1|352418_352508_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_038824087.1|353062_353521_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_038824089.1|353523_354486_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002210441.1|354482_354800_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_011191731.1|354865_356629_+	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_011191732.1|356630_358103_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_011191733.1|358099_359476_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_002210437.1|359469_360552_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_012304586.1|360554_361871_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002210435.1|361870_363073_+	cell division protein FtsW	NA	NA	NA	NA	NA
WP_038824090.1|363069_364140_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_038401631.1|364277_365753_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002210432.1|365745_366666_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_011191736.1|366667_367495_+	cell division protein FtsQ	NA	NA	NA	NA	NA
WP_002210431.1|367521_368778_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002210430.1|368850_370002_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002228285.1|370101_371022_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_002228099.1|371188_371719_-	DUF721 domain-containing protein	NA	NA	NA	NA	NA
WP_011191738.1|371741_372275_+	secA regulator SecM	NA	NA	NA	NA	NA
WP_002210426.1|372352_375067_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_002430076.1|374953_375184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210424.1|375361_375748_+	8-oxo-dGTP diphosphatase MutT	NA	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	30.4	8.4e-06
WP_002213759.1|375962_376421_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP044064	Yersinia pseudotuberculosis strain FDAARGOS_665 chromosome, complete genome	4367018	741405	748831	4367018		Acanthocystis_turfacea_Chlorella_virus(16.67%)	6	NA	NA
WP_011191888.1|741405_742527_+	GDP-mannose 4,6-dehydratase	NA	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	64.4	5.8e-132
WP_038824235.1|742532_743498_+	GDP-L-fucose synthase	NA	M1HWW2	Paramecium_bursaria_Chlorella_virus	47.6	3.6e-82
WP_072080756.1|743671_745066_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.7	6.7e-53
WP_012304488.1|745100_745850_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	36.0	1.8e-07
WP_038825184.1|746197_747157_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2D2W2D2	Stenotrophomonas_phage	30.1	4.7e-05
WP_038825186.1|747460_748831_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	28.9	5.3e-34
>prophage 3
NZ_CP044064	Yersinia pseudotuberculosis strain FDAARGOS_665 chromosome, complete genome	4367018	1035704	1085511	4367018	tail,protease,plate,transposase	Pseudomonas_phage(23.81%)	44	NA	NA
WP_002213759.1|1035704_1036163_+|transposase	IS200/IS605-like element IS1541A family transposase	transposase	NA	NA	NA	NA
WP_002221775.1|1036284_1037493_-	tyrosine transporter TyrP	NA	NA	NA	NA	NA
WP_002210814.1|1038111_1039305_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA	NA
WP_002210815.1|1039362_1039872_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_002210816.1|1039906_1040164_-	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	54.9	4.0e-20
WP_002210817.1|1040167_1041298_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	7.6e-172
WP_002210818.1|1041459_1043748_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	64.9	1.1e-286
WP_038825149.1|1044241_1044970_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_012105449.1|1045269_1047963_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.4	1.4e-102
WP_011171779.1|1048150_1051024_+	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	28.3	3.8e-42
WP_002210824.1|1051091_1051745_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
WP_038825148.1|1051747_1054441_-	phosphotransferase RcsD	NA	NA	NA	NA	NA
WP_002210825.1|1054464_1055619_-	MFS transporter	NA	NA	NA	NA	NA
WP_038825147.1|1056660_1057776_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.4	6.2e-110
WP_012304343.1|1057812_1058421_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012105445.1|1058568_1059030_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_038823879.1|1059656_1060823_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA	NA
WP_002230695.1|1063001_1064030_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002208868.1|1064103_1065891_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
WP_002368991.1|1065990_1066173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050124595.1|1066297_1067233_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA	NA
WP_002208866.1|1067404_1067647_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
WP_002208864.1|1067852_1068575_-	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
WP_071990122.1|1068537_1068750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002215470.1|1068848_1069328_+	antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
WP_072080808.1|1069529_1070843_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	46.0	5.9e-91
WP_032466639.1|1070899_1071571_+	aldolase	NA	A0A077SK32	Escherichia_phage	54.9	1.3e-57
WP_002228023.1|1071570_1072386_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002228022.1|1072403_1073156_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_002208859.1|1073786_1074077_+	hypothetical protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
WP_002208858.1|1074122_1074740_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_002208857.1|1074744_1074939_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
WP_002208856.1|1074935_1076444_+|tail	tail protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
WP_002208855.1|1076465_1076834_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_038823876.1|1076835_1077135_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_012304335.1|1077255_1078749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038824831.1|1079015_1080422_+	hypothetical protein	NA	Q8SBG8	Shigella_phage	34.2	1.2e-17
WP_002208850.1|1080418_1081474_+|tail	tail protein	tail	M1PVV2	Vibrio_phage	27.2	1.3e-37
WP_002215460.1|1081489_1082086_+|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_002208848.1|1082082_1082538_+	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_011192005.1|1082541_1083678_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	3.5e-31
WP_011192006.1|1083674_1084277_+	YmfQ family protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.6	2.0e-33
WP_011192007.1|1084373_1085090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304333.1|1085091_1085511_+|tail	tail assembly protein	tail	F1BUK2	Cronobacter_phage	33.9	1.4e-06
>prophage 4
NZ_CP044064	Yersinia pseudotuberculosis strain FDAARGOS_665 chromosome, complete genome	4367018	2149185	2207845	4367018	coat,protease,tRNA,transposase	Tupanvirus(18.18%)	48	NA	NA
WP_038825304.1|2149185_2151573_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011192546.1|2151586_2152570_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	7.6e-35
WP_123767024.1|2152886_2152967_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_002211833.1|2153068_2153425_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002211834.1|2153462_2153660_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002227898.1|2153756_2154308_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	2.6e-16
WP_002211836.1|2154311_2156240_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.1	1.1e-127
WP_002216696.1|2156630_2156843_+	KTSC domain-containing protein	NA	A0A0K1LMB5	Caulobacter_phage	42.0	9.9e-09
WP_011192547.1|2157152_2157530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086026472.1|2157601_2157886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002211840.1|2158171_2158855_+	MarC family NAAT transporter	NA	NA	NA	NA	NA
WP_002216686.1|2158976_2159639_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_002227896.1|2159847_2160819_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA	NA
WP_086026471.1|2160916_2161729_+	iron/manganese ABC transporter ATP-binding protein YfeB	NA	A0A1V0SKJ1	Klosneuvirus	26.0	9.4e-07
WP_038825302.1|2161728_2162613_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA	NA
WP_038825300.1|2163593_2163782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211846.1|2163806_2164682_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_002211847.1|2164810_2165365_-	yfeABCD regulator yfeE	NA	NA	NA	NA	NA
WP_002220277.1|2165775_2166441_+	hexitol phosphatase HxpB	NA	NA	NA	NA	NA
WP_150352096.1|2166625_2166958_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_012105015.1|2167293_2168130_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002210830.1|2168221_2168983_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.9	3.1e-20
WP_038825299.1|2169327_2170989_+	pectate lyase	NA	NA	NA	NA	NA
WP_002210832.1|2171004_2171895_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002210833.1|2171887_2172808_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002210834.1|2172821_2173949_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	26.5	1.6e-12
WP_038825298.1|2173964_2175257_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002210836.1|2175554_2176265_+	porin	NA	NA	NA	NA	NA
WP_002210837.1|2176744_2177293_+	metal-dependent hydrolase	NA	A0A127AVX7	Bacillus_phage	32.9	4.0e-09
WP_010981403.1|2177490_2178888_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_002210839.1|2179102_2179954_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	28.8	1.3e-11
WP_002210840.1|2180338_2181130_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_011192552.1|2181316_2182483_-	oligogalacturonate lyase	NA	NA	NA	NA	NA
WP_002210843.1|2184251_2185055_-	molecular chaperone	NA	NA	NA	NA	NA
WP_038823813.1|2186138_2187101_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.6	1.7e-23
WP_072080779.1|2190290_2191070_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_012105009.1|2191171_2191714_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_012304008.1|2192246_2192435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002210847.1|2192370_2193252_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_016582765.1|2193705_2195778_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	34.8	4.0e-86
WP_002210849.1|2195797_2196511_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_002210850.1|2196606_2197104_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_038824888.1|2197335_2198583_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_038401478.1|2198551_2201203_+	PqiB family protein	NA	NA	NA	NA	NA
WP_038824887.1|2201680_2202235_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216613.1|2202240_2202771_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_002216611.1|2202791_2203349_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
WP_038824886.1|2206855_2207845_+|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
