assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	1	472085-472208	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|30aa|down_7|NZ_CP040269.1_481104_481194_+	NA|471aa|up_9|NZ_CP040269.1_461538_462951_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040269.1_463507_463717_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040269.1_464172_464799_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040269.1_464819_466922_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040269.1_466925_467573_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040269.1_467636_468305_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040269.1_468301_469087_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040269.1_469090_469903_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP040269.1_469914_471519_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040269.1_471644_471950_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040269.1_472522_473779_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040269.1_473819_475193_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040269.1_475407_476049_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040269.1_476088_477237_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040269.1_477527_478739_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040269.1_478851_479784_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040269.1_479780_480806_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040269.1_481104_481194_+	NA	NA|390aa|down_8|NZ_CP040269.1_481359_482529_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040269.1_482674_483256_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	2	1152757-1152848	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP040269.1_1142007_1142217_-,NA	NA|70aa|up_9|NZ_CP040269.1_1142007_1142217_-	NA	NA|1321aa|up_8|NZ_CP040269.1_1142271_1146234_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP040269.1_1146273_1146912_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP040269.1_1147199_1148291_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP040269.1_1148290_1148983_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP040269.1_1148994_1149381_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP040269.1_1149388_1150189_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP040269.1_1150198_1150789_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP040269.1_1150799_1151294_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP040269.1_1151314_1152643_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP040269.1_1153271_1153868_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP040269.1_1153888_1154116_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP040269.1_1154153_1155395_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP040269.1_1155687_1156944_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP040269.1_1157204_1158125_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP040269.1_1158124_1158430_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP040269.1_1158522_1159122_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP040269.1_1159118_1161665_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP040269.1_1161664_1162837_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP040269.1_1162966_1163659_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	3	1952426-1952519	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GGGGACTGATTTGTGCGCGTTGTTACATCG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|326aa|up_5|NZ_CP040269.1_1946746_1947724_-,NA|310aa|down_9|NZ_CP040269.1_1958785_1959715_+	NA|131aa|up_9|NZ_CP040269.1_1942512_1942905_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_8|NZ_CP040269.1_1942927_1944244_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_7|NZ_CP040269.1_1944449_1945364_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_6|NZ_CP040269.1_1945849_1946692_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_5|NZ_CP040269.1_1946746_1947724_-	NA	NA|310aa|up_4|NZ_CP040269.1_1947740_1948670_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_3|NZ_CP040269.1_1948684_1950061_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|up_2|NZ_CP040269.1_1950243_1950543_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|367aa|up_1|NZ_CP040269.1_1950542_1951643_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|222aa|up_0|NZ_CP040269.1_1951657_1952323_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_0|NZ_CP040269.1_1952594_1953380_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_1|NZ_CP040269.1_1953458_1954196_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_2|NZ_CP040269.1_1954195_1955398_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_3|NZ_CP040269.1_1955557_1956271_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_4|NZ_CP040269.1_1956270_1956702_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_5|NZ_CP040269.1_1956704_1957040_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_6|NZ_CP040269.1_1957121_1957859_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_7|NZ_CP040269.1_1957939_1958218_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|143aa|down_8|NZ_CP040269.1_1958230_1958659_+	pfam05130, FlgN, FlgN protein	NA|310aa|down_9|NZ_CP040269.1_1958785_1959715_+	NA
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	4	3631319-3631436	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|55aa|down_0|NZ_CP040269.1_3631509_3631674_-	NA|115aa|up_9|NZ_CP040269.1_3619040_3619385_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP040269.1_3619573_3620512_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP040269.1_3620610_3621600_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP040269.1_3621621_3622953_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP040269.1_3622978_3624187_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP040269.1_3624220_3626515_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP040269.1_3626528_3626918_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP040269.1_3626989_3628354_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP040269.1_3628628_3629960_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP040269.1_3629987_3631298_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP040269.1_3631509_3631674_-	NA	NA|234aa|down_1|NZ_CP040269.1_3631696_3632398_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP040269.1_3632502_3633399_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP040269.1_3633449_3633806_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP040269.1_3634047_3634413_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP040269.1_3634705_3635692_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP040269.1_3635761_3636244_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP040269.1_3636339_3636639_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP040269.1_3636628_3637033_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP040269.1_3637035_3637341_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	5	4014481-4015851	5,1	CRISPRCasFinder,CRT	no	cas3	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	22,22	22	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP040269.1_4013190_4013331_-,NA	NA|434aa|up_9|NZ_CP040269.1_4003887_4005189_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP040269.1_4005236_4007471_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP040269.1_4007548_4007797_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP040269.1_4007796_4008132_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP040269.1_4008202_4008994_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP040269.1_4009221_4010859_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP040269.1_4010946_4012245_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP040269.1_4012304_4013177_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP040269.1_4013190_4013331_-	NA	NA|224aa|up_0|NZ_CP040269.1_4013469_4014141_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP040269.1_4016489_4017968_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP040269.1_4017994_4019272_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP040269.1_4019590_4020376_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP040269.1_4020445_4021900_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP040269.1_4021993_4023331_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP040269.1_4023308_4024088_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP040269.1_4024084_4024945_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP040269.1_4025092_4025668_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP040269.1_4025684_4025945_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP040269.1_4025935_4027207_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008642415.1_ASM864241v1	NZ_CP040269	Escherichia coli strain 1500 chromosome, complete genome	6	4041551-4042374	1,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP040269.1_4031550_4032285_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP040269.1_4032549_4032702_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP040269.1_4032895_4035595_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP040269.1_4035692_4037255_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP040269.1_4037251_4037788_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP040269.1_4037799_4038855_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP040269.1_4038865_4039612_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP040269.1_4039593_4040244_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP040269.1_4040240_4041161_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040269.1_4041160_4041454_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP040269.1_4042455_4043493_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040269.1_4043744_4044653_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP040269.1_4044654_4046082_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040269.1_4046081_4046687_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP040269.1_4046736_4047060_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040269.1_4047253_4047565_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040269.1_4047583_4048294_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040269.1_4048293_4048773_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040269.1_4048769_4049819_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040269.1_4049799_4050561_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
