assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008632615.1_ASM863261v1	NZ_CP043939	Lactobacillus nenjiangensis strain SH-Y15 chromosome, complete genome	1	258655-261133	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	Type II-B,Type II-C,Type II-A	GTTTTAGAAGAGTATCAAATCAATGAGTTCGAGACC,GTTTTAGAAGAGTATCAAATCAATGAGTTCGAGACC,GTTTTAGAAGAGTATCAAATCAATGAGTTCGAGACC	36,36,36	0	0	NA	NA	NA:NA:NA	36,37,14	37	TypeII-B,TypeII-C,TypeII-A	RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	NA|88aa|up_9|NZ_CP043939.1_246548_246812_+,NA|70aa|up_4|NZ_CP043939.1_252147_252357_+,NA|86aa|down_4|NZ_CP043939.1_264176_264434_+	NA|88aa|up_9|NZ_CP043939.1_246548_246812_+	NA	NA|307aa|up_8|NZ_CP043939.1_246923_247844_-	TIGR02152, Putative_ribokinase, ribokinase	NA|339aa|up_7|NZ_CP043939.1_247853_248870_-	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like	NA|464aa|up_6|NZ_CP043939.1_248856_250248_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|317aa|up_5|NZ_CP043939.1_250552_251503_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|70aa|up_4|NZ_CP043939.1_252147_252357_+	NA	cas9|1359aa|up_3|NZ_CP043939.1_252489_256566_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP043939.1_256767_257673_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|99aa|up_1|NZ_CP043939.1_257659_257956_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP043939.1_257952_258624_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|281aa|down_0|NZ_CP043939.1_261232_262075_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|40aa|down_1|NZ_CP043939.1_262260_262380_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|282aa|down_2|NZ_CP043939.1_262696_263542_+	pfam05067, Mn_catalase, Manganese containing catalase	NA|147aa|down_3|NZ_CP043939.1_263697_264138_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|86aa|down_4|NZ_CP043939.1_264176_264434_+	NA	NA|81aa|down_5|NZ_CP043939.1_264963_265206_+	pfam01527, HTH_Tnp_1, Transposase	NA|281aa|down_6|NZ_CP043939.1_265212_266055_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|509aa|down_7|NZ_CP043939.1_266564_268091_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|324aa|down_8|NZ_CP043939.1_268091_269063_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|444aa|down_9|NZ_CP043939.1_269140_270472_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
GCF_008632615.1_ASM863261v1	NZ_CP043939	Lactobacillus nenjiangensis strain SH-Y15 chromosome, complete genome	2	292218-292320	2	CRISPRCasFinder	no		RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	Orphan	TGGGTGCTGACGCTGTCGTAATGATGCGTTTTGACTC	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	NA,NA	NA|93aa|up_9|NZ_CP043939.1_284022_284301_-	pfam03814, KdpA, Potassium-transporting ATPase A subunit	NA|314aa|up_8|NZ_CP043939.1_284870_285812_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|122aa|up_7|NZ_CP043939.1_285831_286197_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|165aa|up_6|NZ_CP043939.1_286305_286800_-	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism]	NA|458aa|up_5|NZ_CP043939.1_286989_288363_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|412aa|up_4|NZ_CP043939.1_288720_289956_+	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|187aa|up_3|NZ_CP043939.1_289973_290534_-	PRK10323, PRK10323, cysteine/O-acetylserine transporter	NA|134aa|up_2|NZ_CP043939.1_290585_290987_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|308aa|up_1|NZ_CP043939.1_291006_291930_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|74aa|up_0|NZ_CP043939.1_291994_292216_+	PRK00967, PRK00967, hypothetical protein; Provisional	NA|279aa|down_0|NZ_CP043939.1_292535_293372_+	PRK08123, PRK08123, histidinol-phosphatase HisJ	NA|104aa|down_1|NZ_CP043939.1_293380_293692_+	cd11543, NTP-PPase_u6, Nucleoside Triphosphate Pyrophosphohydrolase EC 3	NA|383aa|down_2|NZ_CP043939.1_294294_295443_+	TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit	NA|213aa|down_3|NZ_CP043939.1_295439_296078_+	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed	NA|422aa|down_4|NZ_CP043939.1_296126_297392_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|195aa|down_5|NZ_CP043939.1_297391_297976_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|209aa|down_6|NZ_CP043939.1_297975_298602_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|238aa|down_7|NZ_CP043939.1_298582_299296_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|253aa|down_8|NZ_CP043939.1_299295_300054_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|112aa|down_9|NZ_CP043939.1_300050_300386_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
GCF_008632615.1_ASM863261v1	NZ_CP043939	Lactobacillus nenjiangensis strain SH-Y15 chromosome, complete genome	3	1412080-1414031	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	Type II-B,Type II-C,Type II-A	GGATCGTAACTCATATTTTTACCAAGCTTCTAAAAC,GGATCGTAACTCATATTTTTACCAAGCTTCTAAAAC,GGATCGTAACTCATATTTTTACCAAGCTTCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	29,29,11	29	TypeII-B,TypeII-C,TypeII-A	RT,csa3,cas9,cas1,cas2,csn2,cas3,DinG,PrimPol,DEDDh,cas14j	NA|61aa|up_6|NZ_CP043939.1_1405277_1405460_-,NA|131aa|up_3|NZ_CP043939.1_1406872_1407265_-,NA	NA|460aa|up_9|NZ_CP043939.1_1402237_1403617_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|235aa|up_8|NZ_CP043939.1_1403747_1404452_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|212aa|up_7|NZ_CP043939.1_1404470_1405106_+	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|61aa|up_6|NZ_CP043939.1_1405277_1405460_-	NA	NA|175aa|up_5|NZ_CP043939.1_1405613_1406138_+	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function	NA|222aa|up_4|NZ_CP043939.1_1406169_1406835_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|131aa|up_3|NZ_CP043939.1_1406872_1407265_-	NA	NA|345aa|up_2|NZ_CP043939.1_1407281_1408316_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|402aa|up_1|NZ_CP043939.1_1409154_1410360_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|377aa|up_0|NZ_CP043939.1_1410796_1411927_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	csn2|225aa|down_0|NZ_CP043939.1_1414058_1414733_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|99aa|down_1|NZ_CP043939.1_1414729_1415026_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP043939.1_1415012_1415918_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1367aa|down_3|NZ_CP043939.1_1416137_1420238_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|73aa|down_4|NZ_CP043939.1_1421458_1421677_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|228aa|down_5|NZ_CP043939.1_1421716_1422400_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|1075aa|down_6|NZ_CP043939.1_1424584_1427809_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|293aa|down_7|NZ_CP043939.1_1427823_1428702_-	cd08437, PBP2_MleR, The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold	NA|250aa|down_8|NZ_CP043939.1_1429009_1429759_+	pfam07885, Ion_trans_2, Ion channel	NA|249aa|down_9|NZ_CP043939.1_1429763_1430510_-	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
