assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008632595.1_ASM863259v1	NZ_CP043950	Escherichia coli strain ST95-32 chromosome, complete genome	1	169055-169256	1	PILER-CR	no		WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	NA,NA	NA|252aa|up_9|NZ_CP043950.1_160604_161360_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP043950.1_161373_161979_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP043950.1_161975_163616_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP043950.1_163694_163964_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP043950.1_163967_164483_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP043950.1_164485_165262_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP043950.1_165303_166086_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP043950.1_166082_166571_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP043950.1_166737_168231_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP043950.1_168276_168978_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP043950.1_169260_170424_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP043950.1_170433_172623_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP043950.1_172812_174144_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP043950.1_174143_174758_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP043950.1_174796_176248_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP043950.1_176259_176805_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP043950.1_182385_182913_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP043950.1_182894_183479_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP043950.1_183548_183818_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP043950.1_183894_184881_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_008632595.1_ASM863259v1	NZ_CP043950	Escherichia coli strain ST95-32 chromosome, complete genome	2	614847-614986	1	CRISPRCasFinder	no		WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	NA,NA	NA|335aa|up_9|NZ_CP043950.1_603391_604396_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP043950.1_604406_605351_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP043950.1_605361_606582_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP043950.1_607259_607712_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP043950.1_607757_608762_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP043950.1_608923_609340_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP043950.1_609516_610020_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP043950.1_610212_611400_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP043950.1_611446_614302_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP043950.1_614301_614745_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP043950.1_615002_616514_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP043950.1_616780_617881_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP043950.1_617880_618963_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP043950.1_619123_620626_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP043950.1_620703_621702_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP043950.1_621768_623088_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP043950.1_623152_623917_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP043950.1_623940_624972_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP043950.1_625188_625752_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP043950.1_625755_626775_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_008632595.1_ASM863259v1	NZ_CP043950	Escherichia coli strain ST95-32 chromosome, complete genome	3	1501416-1501546	2	CRISPRCasFinder	no		WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	NA|125aa|up_6|NZ_CP043950.1_1495668_1496043_-,NA|36aa|up_4|NZ_CP043950.1_1497679_1497787_-,NA|99aa|down_5|NZ_CP043950.1_1509218_1509515_+	NA|245aa|up_9|NZ_CP043950.1_1492912_1493647_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NZ_CP043950.1_1493682_1494474_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NZ_CP043950.1_1494470_1495517_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NZ_CP043950.1_1495668_1496043_-	NA	NA|428aa|up_5|NZ_CP043950.1_1496190_1497474_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP043950.1_1497679_1497787_-	NA	NA|130aa|up_3|NZ_CP043950.1_1498182_1498572_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP043950.1_1498565_1498913_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP043950.1_1498912_1500679_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP043950.1_1500694_1501411_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP043950.1_1501771_1504573_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP043950.1_1504587_1505805_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP043950.1_1505898_1507065_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP043950.1_1507064_1507934_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_CP043950.1_1508173_1509289_+	sd00006, TPR, Tetratricopeptide repeat	NA|99aa|down_5|NZ_CP043950.1_1509218_1509515_+	NA	NA|523aa|down_6|NZ_CP043950.1_1510618_1512187_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_7|NZ_CP043950.1_1512202_1513342_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_8|NZ_CP043950.1_1513356_1513470_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_9|NZ_CP043950.1_1513469_1513763_+	PRK10588, PRK10588, hypothetical protein; Provisional
GCF_008632595.1_ASM863259v1	NZ_CP043950	Escherichia coli strain ST95-32 chromosome, complete genome	4	1705969-1706176	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTT,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,23,28	1	1	1705997-1706028	NZ_CP043952.1_59516-59485	I-F:I-F:I-F	2,3,3	3	TypeI-F	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	NA,NA	NA|372aa|up_9|NZ_CP043950.1_1690242_1691358_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|NZ_CP043950.1_1691354_1693301_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|NZ_CP043950.1_1693373_1693598_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|NZ_CP043950.1_1693920_1694241_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|NZ_CP043950.1_1694271_1696548_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|NZ_CP043950.1_1697080_1698064_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NZ_CP043950.1_1698060_1701294_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NZ_CP043950.1_1701623_1702931_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NZ_CP043950.1_1703861_1704863_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP043950.1_1704873_1705428_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP043950.1_1706288_1706507_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP043950.1_1706791_1707496_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP043950.1_1707537_1709259_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP043950.1_1709259_1711026_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP043950.1_1711148_1712114_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP043950.1_1712657_1713152_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|NZ_CP043950.1_1713286_1717330_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP043950.1_1717488_1718100_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP043950.1_1718110_1719454_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP043950.1_1719544_1720837_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_008632595.1_ASM863259v1	NZ_CP043950	Escherichia coli strain ST95-32 chromosome, complete genome	5	2897644-2897765	4	CRISPRCasFinder	no		WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	Orphan	CCTGATAAGACGCGACAGCGGCGCATCAGGC	31	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3	NA|66aa|up_1|NZ_CP043950.1_2895174_2895372_-,NA	NA|438aa|up_9|NZ_CP043950.1_2887222_2888536_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|199aa|up_8|NZ_CP043950.1_2888878_2889475_-	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|128aa|up_7|NZ_CP043950.1_2889471_2889855_-	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|541aa|up_6|NZ_CP043950.1_2889847_2891470_-	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|319aa|up_5|NZ_CP043950.1_2891585_2892542_-	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|224aa|up_4|NZ_CP043950.1_2892538_2893210_-	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|189aa|up_3|NZ_CP043950.1_2893206_2893773_-	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|479aa|up_2|NZ_CP043950.1_2893817_2895254_-	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|66aa|up_1|NZ_CP043950.1_2895174_2895372_-	NA	NA|653aa|up_0|NZ_CP043950.1_2895645_2897604_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|105aa|down_0|NZ_CP043950.1_2897895_2898210_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|550aa|down_1|NZ_CP043950.1_2898206_2899856_+	PRK09395, actP, cation/acetate symporter ActP	NA|230aa|down_2|NZ_CP043950.1_2899894_2900584_-	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|137aa|down_3|NZ_CP043950.1_2900576_2900987_-	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|295aa|down_4|NZ_CP043950.1_2901090_2901975_+	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|550aa|down_5|NZ_CP043950.1_2902010_2903660_-	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|450aa|down_6|NZ_CP043950.1_2903810_2905160_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|155aa|down_7|NZ_CP043950.1_2905706_2906171_-	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|108aa|down_8|NZ_CP043950.1_2906256_2906580_+	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|529aa|down_9|NZ_CP043950.1_2906582_2908169_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
