The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	0	61232	2751401	capsid,holin,head,tail,terminase,protease,portal	Staphylococcus_phage(80.0%)	63	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_117207574.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.9e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_117207573.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.1e-214
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114225.1|5675_6080_+	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|6484_7129_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7170_7395_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_117216377.1|8039_12569_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	94.1	0.0e+00
WP_117216375.1|12565_14050_+|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	99.8	4.5e-297
WP_117216374.1|14065_17848_+	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.7	0.0e+00
WP_001000058.1|17840_17993_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262620.1|18038_18326_+	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_000340977.1|18381_18756_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_072353918.1|18898_19075_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_001791821.1|19127_19235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19286_19541_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19552_20308_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920041.1|20498_20990_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000702262.1|22487_22838_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|22890_23151_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|23461_23641_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_078370071.1|24598_26650_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068523.1|26973_28260_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|28459_28558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|28800_28977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691587.1|29235_29616_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991304.1|29612_30509_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645736.1|30509_31190_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763045.1|31186_32059_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|32058_32799_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|32864_33428_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|33548_34073_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|34132_34690_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713071.1|34686_35529_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188074.1|35585_36626_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|37076_37250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|37822_38224_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|38493_39522_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021219.1|39641_41021_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_072384913.1|41071_41245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|41437_42367_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|42419_42980_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275709.1|43351_44449_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	4.3e-47
WP_000323161.1|44653_46216_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|46226_46334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_117196864.1|46405_47200_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897640.1|47219_48296_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284433.1|48479_49949_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000040866.1|49941_50763_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000011542.1|51033_51636_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669864.1|51616_51790_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|52081_52408_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827764.1|52438_53605_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000572878.1|54465_55761_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55869_56172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272070.1|56343_57036_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|57032_59225_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774559.1|59228_61232_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	3.4e-114
>prophage 2
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	68350	73378	2751401		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|68350_69298_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147870.1|69378_70740_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	4.8e-104
WP_000548781.1|70909_71440_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|71686_72757_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|72823_73378_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 3
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	76830	77244	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001566709.1|76830_77244_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	37.7	2.3e-17
>prophage 4
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	82356	82986	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|82356_82986_+	two-component system response regulator VraR	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 5
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	98465	100202	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000597247.1|98465_100202_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	2.2e-53
>prophage 6
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	116742	163612	2751401	protease,tRNA	Staphylococcus_phage(85.71%)	44	NA	NA
WP_000590809.1|116742_117465_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379980.1|117616_118744_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|118748_119219_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|119377_119977_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|120001_120154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|120701_121097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116229.1|121292_122678_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|123129_123951_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|124113_125226_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|125247_125871_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|126226_126691_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992526.1|126869_127994_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|128062_128407_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|128899_128998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|129294_130491_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_150030404.1|130480_133417_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|133413_134355_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|134475_135438_-	foldase	NA	NA	NA	NA	NA
WP_000477962.1|135642_136200_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|136932_137298_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|137439_137862_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|137995_138736_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245771.1|138728_139952_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|140075_140579_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_031866187.1|140741_140852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|140841_141879_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|141936_142860_+	ferrochelatase	NA	NA	NA	NA	NA
WP_150030406.1|142883_144284_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|144605_145160_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000473594.1|149618_150554_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	5.1e-174
WP_000782446.1|150555_151539_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000543844.1|151908_152700_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|152704_153178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092769.1|154123_154702_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	74.0	5.8e-67
WP_001039430.1|155665_156373_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	3.6e-127
WP_001039447.1|156497_157220_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|157277_157997_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038706.1|158117_158837_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_011447030.1|158785_158893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038757.1|158994_159711_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_001038715.1|159861_160581_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	5.4e-131
WP_031865257.1|160645_160780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031900397.1|160944_162501_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	2.4e-285
WP_000072558.1|162493_163612_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
>prophage 7
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	168846	217081	2751401	protease,tRNA	Staphylococcus_phage(94.44%)	43	NA	NA
WP_000864138.1|168846_169404_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	3.5e-77
WP_000627548.1|170274_170616_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	1.0e-55
WP_000669019.1|170656_171283_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.6	2.9e-96
WP_000070647.1|171358_172354_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.0	2.1e-69
WP_001789021.1|172434_173085_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_072361838.1|173387_173843_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	6.7e-79
WP_000348369.1|174001_175480_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.0	1.6e-283
WP_000778537.1|175484_176486_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000718107.1|176482_176740_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|176805_177279_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_072361841.1|177283_178030_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	2.9e-143
WP_000109917.1|178282_179875_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933822.1|180246_181440_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366170.1|181564_182473_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	3.7e-137
WP_000453301.1|182684_183518_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.0e-157
WP_000623470.1|185514_185868_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|185864_186230_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091441.1|186485_186788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|187047_187761_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168902.1|188200_188836_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|189131_189575_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|189561_190005_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671324.1|190117_190588_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	6.7e-82
WP_000384171.1|190786_191011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|191286_192141_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|192227_193520_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|193519_193834_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|194356_195859_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000077358.1|196339_197383_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_000493878.1|197389_198022_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	2.2e-112
WP_001159022.1|198032_199214_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|199226_199691_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_150030408.1|199812_200814_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|200925_201045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|201047_201875_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_150030410.1|202446_202848_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|202967_203531_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526540.1|203527_204481_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.4e-78
WP_001025061.1|204590_205772_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001566684.1|206059_208477_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836463.1|208498_208810_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	6.3e-52
WP_117196773.1|209135_215696_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.7	4.2e-307
WP_001566682.1|215812_217081_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 8
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	228619	233947	2751401		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|228619_229477_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|229505_230102_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118326.1|230122_233947_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.0e-83
>prophage 9
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	242699	244406	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862083.1|242699_244406_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	100.0	1.2e-274
>prophage 10
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	251026	253657	2751401	tRNA	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|251026_252289_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|252382_253657_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 11
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	257426	261561	2751401		Staphylococcus_phage(50.0%)	4	NA	NA
WP_150030413.1|257426_259031_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	99.5	3.5e-114
WP_000291417.1|259017_260178_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553929.1|260291_260738_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174286.1|260817_261561_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.5	1.4e-17
>prophage 12
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	279100	282298	2751401		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226909.1|279100_282298_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	2.2e-136
>prophage 13
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	287231	288989	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|287231_288989_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 14
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	293873	302037	2751401		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|293873_294578_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|294577_296239_+	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849439.1|296737_298225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038306.1|298518_301149_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114452.1|301164_302037_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
>prophage 15
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	307917	319070	2751401	protease,tRNA	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|307917_308838_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|308930_309053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|309250_311188_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|311613_313107_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|313335_313863_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|313891_314092_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|314138_314495_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|314636_315245_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280018.1|315263_316193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|316197_316308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127580.1|316355_317657_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|317807_319070_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 16
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	328637	331268	2751401	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|328637_331268_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 17
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	341660	377041	2751401	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|341660_342665_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019167.1|342666_343692_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|343714_344854_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|344872_345133_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|345407_347687_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594995.1|347889_350163_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|350184_350703_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|351130_353320_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|353331_353784_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|353780_354656_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|355116_356379_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_150030417.1|356394_358161_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|358493_358622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|358621_359395_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|359555_360830_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|360914_361337_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|361436_361619_+	CsbD family protein	NA	NA	NA	NA	NA
WP_150030419.1|361658_361805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985895.1|362041_363055_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409158.1|363366_364509_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066092.1|364509_365628_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567030.1|366090_366759_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|366760_369238_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734071.1|369580_372211_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|372273_372534_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|372537_372966_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134776.1|372980_373289_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|373573_374212_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|374214_375138_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|375149_376418_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|376417_377041_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 18
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	385624	386389	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_029644402.1|385624_386389_+	enterotoxin	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.2e-48
>prophage 19
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	392880	399822	2751401		Indivirus(25.0%)	6	NA	NA
WP_001793467.1|392880_393567_+	ComEA family DNA-binding protein	NA	A0A1V0SDW0	Indivirus	30.4	7.5e-05
WP_000439693.1|393658_394120_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_064130030.1|394124_396326_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	6.1e-32
WP_001282568.1|396382_397357_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|397401_397653_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|397998_399822_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 20
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	403315	406423	2751401		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|403315_405148_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|405283_406423_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 21
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	412893	413841	2751401		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|412893_413841_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 22
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	416895	430623	2751401	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|416895_418287_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|418621_419245_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|419255_420074_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_117185751.1|420134_421934_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	6.0e-54
WP_150030421.1|422157_423264_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624580.1|423394_424072_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683933.1|424074_425175_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062177.1|425288_426635_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|426644_427535_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|427660_428446_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|428487_429351_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|429337_429748_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|430023_430623_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 23
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	436796	437420	2751401		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|436796_437420_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 24
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	442964	445776	2751401		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_117196782.1|442964_444311_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.7	1.4e-63
WP_000202189.1|444303_445776_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3SN07	Prochlorococcus_phage	41.3	6.2e-81
>prophage 25
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	453276	459847	2751401		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|453276_454614_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|454606_454837_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183375.1|454814_455696_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.1	8.9e-11
WP_001124985.1|456127_456580_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|456595_458275_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291528.1|458425_459847_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	3.9e-40
>prophage 26
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	466676	468083	2751401		Synechococcus_phage(100.0%)	1	NA	NA
WP_150030425.1|466676_468083_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 27
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	474509	475994	2751401		Cyanophage(100.0%)	1	NA	NA
WP_000105076.1|474509_475994_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	1.8e-80
>prophage 28
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	481658	491134	2751401		Brevibacillus_phage(20.0%)	9	NA	NA
WP_000447732.1|481658_482546_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	4.3e-37
WP_001183437.1|482623_483130_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|483221_483953_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|483945_484488_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|484480_485218_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|485350_486076_+	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|486056_487808_+	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001566647.1|488052_488979_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033752.1|488971_491134_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	55.0	2.2e-50
>prophage 29
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	495577	498256	2751401		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|495577_495826_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163797.1|495933_496887_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902123.1|496876_498256_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	3.8e-56
>prophage 30
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	507680	513149	2751401		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|507680_507953_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|508383_508956_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|508958_509684_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096482.1|509685_510645_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|510736_511186_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|511395_511596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269922.1|511982_513149_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	4.5e-34
>prophage 31
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	516811	517387	2751401		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|516811_517387_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 32
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	520759	528265	2751401	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_001566636.1|520759_521962_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
WP_000049918.1|521948_522920_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525081.1|522943_525637_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858785.1|525958_527251_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	2.5e-54
WP_000362218.1|527578_528265_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 33
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	532004	532682	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_001795446.1|532004_532682_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.9e-24
>prophage 34
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	541956	542835	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_001133025.1|541956_542835_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.1	4.0e-19
>prophage 35
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	579089	588479	2751401		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|579089_579794_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|580038_580233_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|580244_580496_+	NifU N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000404645.1|580533_581658_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|581673_582111_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|582534_583491_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|583690_584170_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166060.1|584184_585024_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159902.1|585109_585643_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|585635_586064_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|586075_586576_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|586575_586797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150030435.1|586988_588479_+	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	30.2	6.6e-22
>prophage 36
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	592675	594687	2751401		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|592675_593335_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|593331_594687_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 37
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	600852	601644	2751401		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|600852_601644_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 38
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	605184	610215	2751401	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|605184_606321_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|606352_606982_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_001215907.1|607000_607270_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|607432_607741_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|607911_608112_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|608308_608710_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|608949_610215_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 39
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	618262	619864	2751401		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|618262_619864_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 40
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	624953	628407	2751401		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|624953_625805_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|625811_626453_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|626592_628407_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 41
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	631821	632523	2751401		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|631821_632523_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 42
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	639894	642249	2751401		Acinetobacter_phage(100.0%)	3	NA	NA
WP_001566620.1|639894_640677_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	7.1e-28
WP_000173825.1|640678_641677_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.5	1.9e-33
WP_000604819.1|641682_642249_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.7e-23
>prophage 43
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	646567	647830	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|646567_647830_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 44
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	657489	661883	2751401		Bacillus_phage(50.0%)	2	NA	NA
WP_001289569.1|657489_659892_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.8e-93
WP_001548666.1|659891_661883_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 45
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	667763	669410	2751401		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|667763_669410_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 46
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	673079	674201	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691290.1|673079_674201_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	3.3e-10
>prophage 47
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	678351	684007	2751401		Phage_Wrath(25.0%)	6	NA	NA
WP_001208755.1|678351_678975_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_170961871.1|679354_680371_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	6.2e-16
WP_000688122.1|680392_681370_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|681526_681796_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|682249_682399_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|682489_684007_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 48
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	694143	698419	2751401		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|694143_694677_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|694815_695004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|695116_695719_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670300.1|695715_696807_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603968.1|696810_697542_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|697510_698419_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 49
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	702367	703018	2751401		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000572947.1|702367_702721_-	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	44.4	1.1e-20
WP_000780596.1|702823_703018_-	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	3.7e-18
>prophage 50
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	707130	710166	2751401		Staphylococcus_phage(100.0%)	5	NA	NA
WP_000006110.1|707130_707316_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|707743_707854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|708554_708761_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001789892.1|709054_709279_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001788714.1|709968_710166_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	2.9e-10
>prophage 51
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	715247	715724	2751401		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|715247_715724_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 52
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	721666	728148	2751401		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|721666_722485_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|722959_723502_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516264.1|723507_725517_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
WP_000073352.1|725529_728148_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 53
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	737562	738606	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|737562_738606_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 54
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	742807	748477	2751401		Bacillus_virus(33.33%)	4	NA	NA
WP_001566607.1|742807_744094_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	1.8e-15
WP_000089941.1|744093_745359_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|745389_746103_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000035773.1|746107_748477_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
>prophage 55
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	753490	765304	2751401	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864176.1|753490_754462_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282305.1|754476_755394_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|755563_755914_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043632.1|756299_758417_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	1.8e-25
WP_000020853.1|758421_758739_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|758735_759020_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097457.1|759040_760216_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|760236_760704_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_078064478.1|760993_765304_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 56
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	769577	770348	2751401		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|769577_770348_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 57
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	775122	788793	2751401	protease,tRNA	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|775122_776526_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|776591_777137_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015597.1|777133_778030_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
WP_000195254.1|778446_779754_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|779909_781985_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000593192.1|782158_783031_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672867.1|783203_784448_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041667.1|784475_785594_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110251.1|785820_786729_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|786750_787917_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176387.1|788025_788793_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 58
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	802403	804652	2751401		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|802403_803135_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|803250_803484_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|803917_804652_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 59
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	815023	817018	2751401		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|815023_817018_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 60
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	820165	821101	2751401	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161286.1|820165_821101_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 61
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	826110	828367	2751401		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|826110_827310_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|827525_827744_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|827743_828367_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 62
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	831681	832293	2751401		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|831681_832293_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 63
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	836260	840871	2751401		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|836260_837361_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|837362_838637_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|838654_839536_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|839563_840871_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 64
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	845336	848090	2751401	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|845336_848090_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 65
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	869656	869845	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245802.1|869656_869845_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 66
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	878871	880831	2751401		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|878871_879096_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|879052_879199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857483.1|879871_880831_+	alpha-hemolysin	NA	A0A2H4PQH7	Staphylococcus_phage	29.9	2.8e-34
>prophage 67
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	894941	899499	2751401		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|894941_895256_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249305.1|895428_897777_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.5	1.1e-15
WP_000161940.1|897786_899499_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
>prophage 68
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	904379	905438	2751401	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|904379_905438_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 69
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	917382	920290	2751401		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|917382_917865_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|917866_918409_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|918478_918868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|918870_919125_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757568.1|919363_920290_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
>prophage 70
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	931806	933654	2751401		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_150030452.1|931806_933654_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	41.4	9.9e-20
>prophage 71
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	941789	950622	2751401		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|941789_942884_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|942896_943436_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455589.1|943579_943855_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|944022_945429_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863440.1|945432_946725_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|946815_947793_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|947796_948909_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668339.1|949079_949706_-	YkyA family protein	NA	NA	NA	NA	NA
WP_000957036.1|950070_950622_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 72
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	956738	961118	2751401		Bacillus_virus(50.0%)	5	NA	NA
WP_001289614.1|956738_956972_+	glutaredoxin-like protein NrdH	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040054.1|957208_958927_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|958929_959196_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|959349_959892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685063.1|959945_961118_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 73
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	964486	979246	2751401		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921973.1|964486_965887_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|965879_966686_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101920.1|966950_968198_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709282.1|968219_969698_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238670.1|969712_970279_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000030811.1|970281_971310_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483712.1|971302_972787_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	7.2e-45
WP_000032727.1|972765_974955_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|974947_975619_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|975620_975884_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|975883_976588_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|976591_977716_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|977702_978185_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225837.1|978385_979246_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
>prophage 74
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	989646	993417	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074561.1|989646_993417_+	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 75
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	997083	998094	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676528.1|997083_998094_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 76
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1006474	1010120	2751401		Enterococcus_phage(50.0%)	7	NA	NA
WP_000867357.1|1006474_1006690_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_020978112.1|1006753_1006885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1006930_1007890_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1008377_1008734_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1008822_1008960_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1009100_1009391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571174.1|1009478_1010120_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	5.9e-20
>prophage 77
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1020317	1025528	2751401	protease	Pithovirus(33.33%)	3	NA	NA
WP_072467399.1|1020317_1022642_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1022860_1023664_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049951.1|1023965_1025528_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 78
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1044455	1046264	2751401		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1044455_1046264_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 79
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1052078	1054048	2751401		Bacillus_virus(100.0%)	2	NA	NA
WP_000427772.1|1052078_1053059_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.0e-16
WP_001067044.1|1053061_1054048_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 80
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1057699	1059713	2751401		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786735.1|1057699_1058641_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_117185703.1|1058630_1059713_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 81
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1070491	1075118	2751401		Agrobacterium_phage(50.0%)	2	NA	NA
WP_000353955.1|1070491_1073101_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044230.1|1073303_1075118_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 82
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1081374	1085028	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000154935.1|1081374_1085028_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.4	4.5e-24
>prophage 83
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1095182	1102290	2751401		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185321.1|1095182_1096112_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.1e-38
WP_000138487.1|1096562_1097807_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1097915_1099106_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838029.1|1099414_1100542_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1100903_1101281_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1101696_1102290_-	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 84
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1112210	1115838	2751401		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009697.1|1112210_1113686_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	6.9e-48
WP_000046076.1|1113816_1115025_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001143497.1|1115478_1115838_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 85
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1119881	1122550	2751401		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1119881_1121096_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129653.1|1121092_1122550_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
>prophage 86
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1135633	1139156	2751401		environmental_halophage(50.0%)	3	NA	NA
WP_001006454.1|1135633_1136884_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_000205572.1|1136989_1138297_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1138394_1139156_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 87
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1142642	1151800	2751401		Streptococcus_phage(40.0%)	13	NA	NA
WP_000571218.1|1142642_1143668_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_001065801.1|1143917_1144214_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001018962.1|1144206_1144593_-	topiosmerase	NA	NA	NA	NA	NA
WP_000932216.1|1145007_1145886_-	DUF1963 domain-containing protein	NA	NA	NA	NA	NA
WP_000290489.1|1146064_1146445_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_000589549.1|1146602_1146959_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147953.1|1147102_1147423_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	1.2e-05
WP_000422910.1|1147572_1148112_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150019.1|1148194_1148911_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	6.1e-18
WP_000974460.1|1149058_1149481_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1149879_1150374_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255561.1|1150528_1151146_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001140697.1|1151218_1151800_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.4	3.2e-33
>prophage 88
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1155189	1156433	2751401		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1155189_1155390_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001566557.1|1155746_1156433_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 89
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1165529	1174406	2751401		Staphylococcus_phage(50.0%)	8	NA	NA
WP_150030460.1|1165529_1166258_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001058299.1|1166611_1166935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085185.1|1168256_1168721_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050063.1|1168742_1171115_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	5.1e-93
WP_001165962.1|1171148_1171889_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1172004_1172238_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1172304_1172763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1173101_1174406_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 90
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1183687	1189564	2751401		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1183687_1184275_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1184847_1185792_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1185902_1186898_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1186894_1187806_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1188628_1189564_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 91
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1193899	1196746	2751401		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662681.1|1193899_1196746_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 92
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1200064	1200904	2751401		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753321.1|1200064_1200904_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 93
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1207119	1212831	2751401		Streptococcus_phage(66.67%)	5	NA	NA
WP_117185658.1|1207119_1208202_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	34.9	1.7e-43
WP_000686344.1|1208565_1209432_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192947.1|1209575_1210217_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000258151.1|1210387_1211443_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1211760_1212831_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 94
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1222112	1245597	2751401		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1222112_1222874_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245573.1|1222870_1223827_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1223813_1224785_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1224823_1224979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1225492_1226464_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1226581_1228687_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1228649_1229048_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1229848_1230715_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1230734_1231235_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1231575_1233081_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031835073.1|1233158_1233260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1233350_1234268_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197271.1|1234868_1235411_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663024.1|1235705_1236764_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1237003_1238518_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589260.1|1238510_1239488_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_150030462.1|1239709_1241491_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	36.8	7.2e-76
WP_000525111.1|1241502_1243386_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098279.1|1243656_1245597_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	2.2e-110
>prophage 95
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1248736	1258583	2751401		Pandoravirus(12.5%)	12	NA	NA
WP_001217797.1|1248736_1249888_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604515.1|1249871_1250465_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_000446724.1|1250815_1251484_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1251485_1251905_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1251908_1252622_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1252720_1253305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1253584_1254025_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1254367_1254841_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1254815_1255502_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1255501_1256557_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1256628_1257612_-	lipoteichoic acid-specific glycosylation protein CsbB	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931239.1|1257743_1258583_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.9	2.5e-55
>prophage 96
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1270194	1271568	2751401		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952036.1|1270194_1271568_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.6	3.0e-45
>prophage 97
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1276545	1282825	2751401		Bacillus_phage(33.33%)	6	NA	NA
WP_000857623.1|1276545_1278219_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.4	2.0e-11
WP_000737143.1|1278215_1279847_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469890.1|1280065_1280941_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1281112_1281796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148828.1|1281798_1282257_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|1282258_1282825_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
>prophage 98
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1289684	1290158	2751401		Pandoravirus(100.0%)	1	NA	NA
WP_000833483.1|1289684_1290158_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	39.4	2.1e-14
>prophage 99
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1295420	1296218	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000731641.1|1295420_1296218_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	9.3e-07
>prophage 100
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1301049	1301811	2751401		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1301049_1301811_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 101
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1306221	1307265	2751401		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030771.1|1306221_1307265_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 102
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1313788	1321770	2751401		Planktothrix_phage(20.0%)	7	NA	NA
WP_001080809.1|1313788_1314586_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
WP_150030466.1|1314867_1315701_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	34.4	1.3e-35
WP_001788321.1|1315878_1315971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000479279.1|1316225_1317455_-	nucleoside permease	NA	NA	NA	NA	NA
WP_000817956.1|1317811_1319539_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793046.1|1319959_1321255_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1321371_1321770_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 103
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1328704	1329448	2751401		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1328704_1329448_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 104
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1340466	1341027	2751401	integrase	Streptococcus_phage(100.0%)	1	1334620:1334634	1344617:1344631
1334620:1334634	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1340466_1341027_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1340466_1341027_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1344617:1344631	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 105
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1353921	1357275	2751401		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1353921_1354932_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|1355430_1355952_-	YwhD family protein	NA	NA	NA	NA	NA
WP_000180234.1|1355979_1357275_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 106
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1364304	1370902	2751401	transposase	Staphylococcus_phage(33.33%)	8	NA	NA
WP_078096690.1|1364304_1364778_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	45.0	3.0e-29
WP_001553868.1|1364758_1365289_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_031904066.1|1365400_1365763_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_031904065.1|1365810_1366404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001553872.1|1366410_1367448_-	CHAP domain-containing protein	NA	A0A1X9SGZ2	Bradyrhizobium_phage	31.4	2.7e-06
WP_001553875.1|1367437_1369354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031438.1|1369369_1369537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001553878.1|1369543_1370902_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	30.6	3.5e-46
>prophage 107
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1385716	1387039	2751401		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_001566530.1|1385716_1387039_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.1	5.3e-108
>prophage 108
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1398341	1398998	2751401		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1398341_1398998_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 109
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1402639	1405960	2751401		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1402639_1404016_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1404559_1405960_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 110
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1429326	1429989	2751401		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1429326_1429989_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 111
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1436568	1437756	2751401		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1436568_1437756_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 112
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1440784	1451738	2751401		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1440784_1442866_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1442988_1443459_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1443524_1443938_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1444035_1444290_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_001788197.1|1444426_1448023_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1448186_1451738_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 113
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1455421	1460204	2751401	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1455421_1455970_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1455982_1456165_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1456220_1456364_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872876.1|1456478_1457048_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664738.1|1457128_1457653_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_150030480.1|1457652_1458399_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1458406_1458811_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631973.1|1458803_1460204_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	2.5e-55
>prophage 114
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1466214	1468671	2751401	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1466214_1468671_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 115
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1487808	1498080	2751401	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288199.1|1487808_1489296_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1489348_1489441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613716.1|1489834_1490311_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1490307_1490673_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167924.1|1490650_1491454_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	1.3e-21
WP_000057594.1|1491669_1492602_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1492780_1493662_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1493890_1495984_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1496240_1496780_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176724.1|1496784_1498080_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	2.4e-12
>prophage 116
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1507336	1509801	2751401		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1507336_1508302_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252529.1|1508448_1509801_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 117
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1515685	1518783	2751401	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051129.1|1515685_1517659_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	1.5e-93
WP_000279917.1|1517943_1518783_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	46.2	7.1e-58
>prophage 118
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1522689	1523307	2751401		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1522689_1523307_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 119
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1532122	1533820	2751401		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1532122_1533820_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 120
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1550466	1556706	2751401		Lactobacillus_phage(33.33%)	6	NA	NA
WP_029644453.1|1550466_1551456_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825528.1|1551801_1552644_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467991.1|1552680_1553340_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569289.1|1553343_1554369_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	3.1e-31
WP_117196845.1|1554665_1555808_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634098.1|1555800_1556706_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 121
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1582878	1589247	2751401	transposase	Streptococcus_phage(33.33%)	6	NA	NA
WP_150030484.1|1582878_1584237_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.7	1.3e-40
WP_000681159.1|1584241_1586089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000247476.1|1586078_1587125_+	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000810443.1|1587131_1587722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_117185831.1|1588226_1588730_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_078056058.1|1588710_1589247_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	9.9e-29
>prophage 122
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1593172	1595981	2751401		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072566.1|1593172_1594432_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	63.7	4.5e-133
WP_000028602.1|1594424_1595981_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.3	2.4e-285
>prophage 123
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1609015	1609705	2751401		Moraxella_phage(100.0%)	1	NA	NA
WP_000416469.1|1609015_1609705_-	NYN domain-containing protein	NA	A0A0R6PGY5	Moraxella_phage	43.4	6.5e-41
>prophage 124
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1616099	1616432	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000212549.1|1616099_1616432_-	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	54.8	1.7e-10
>prophage 125
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1620494	1623527	2751401		Hokovirus(50.0%)	2	NA	NA
WP_000424968.1|1620494_1622036_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1622060_1623527_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 126
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1632605	1634129	2751401		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1632605_1634129_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 127
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1643781	1650115	2751401		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1643781_1644285_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1644305_1644602_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1644845_1645037_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1645122_1646220_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157345.1|1646231_1646435_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001077603.1|1646464_1647346_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001566903.1|1647502_1648348_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655703.1|1649011_1650115_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	29.0	1.3e-11
>prophage 128
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1660056	1660899	2751401		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209552.1|1660056_1660899_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.2	1.1e-10
>prophage 129
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1682002	1684737	2751401		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280806.1|1682002_1683025_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_150030520.1|1683002_1683947_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449064.1|1683936_1684737_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	8.9e-42
>prophage 130
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1702967	1703645	2751401		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1702967_1703645_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 131
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1719202	1723651	2751401		Mycobacterium_phage(100.0%)	1	NA	NA
WP_117185821.1|1719202_1723651_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.6	1.7e-28
>prophage 132
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1734257	1735919	2751401		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570075.1|1734257_1734917_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736793.1|1734968_1735919_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 133
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1745210	1746647	2751401		Pandoravirus(100.0%)	1	NA	NA
WP_000164005.1|1745210_1746647_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.1e-29
>prophage 134
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1750407	1754945	2751401		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000950281.1|1750407_1752162_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	9.0e-63
WP_000608831.1|1752405_1753080_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975364.1|1753223_1754945_-	poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 135
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1764272	1765316	2751401		Synechococcus_phage(100.0%)	1	NA	NA
WP_150030489.1|1764272_1765316_-	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 136
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1772529	1774059	2751401		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|1772529_1774059_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 137
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1782934	1784440	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008411.1|1782934_1784440_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	9.2e-40
>prophage 138
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1795544	1800903	2751401		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894659.1|1795544_1797794_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.2	7.5e-187
WP_000837110.1|1798381_1799350_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127984.1|1799346_1800903_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 139
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1811113	1813172	2751401		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818914.1|1811113_1812211_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166906.1|1812593_1813172_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
>prophage 140
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1821706	1823299	2751401		Bacillus_virus(100.0%)	1	NA	NA
WP_000067358.1|1821706_1823299_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	2.9e-15
>prophage 141
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1841445	1842630	2751401		Klosneuvirus(100.0%)	1	NA	NA
WP_001084436.1|1841445_1842630_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	9.2e-35
>prophage 142
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1847466	1857748	2751401		Tupanvirus(50.0%)	3	NA	NA
WP_001566873.1|1847466_1854642_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.5	7.7e-68
WP_000826856.1|1855088_1856339_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706137.1|1856722_1857748_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 143
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1861286	1864517	2751401		Bacillus_virus(50.0%)	4	NA	NA
WP_000590844.1|1861286_1862027_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	2.2e-39
WP_000171919.1|1862368_1862881_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1863059_1863263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013481.1|1863557_1864517_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 144
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1867857	1870342	2751401		Catovirus(50.0%)	2	NA	NA
WP_000723452.1|1867857_1869003_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	3.2e-24
WP_000779515.1|1869079_1870342_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.8	1.1e-22
>prophage 145
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1877359	1883923	2751401		Catovirus(50.0%)	5	NA	NA
WP_000413169.1|1877359_1878484_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	8.7e-128
WP_001028296.1|1878487_1879597_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_150030497.1|1879609_1880638_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.0	2.5e-41
WP_000940798.1|1880627_1882451_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	4.0e-29
WP_000037332.1|1883236_1883923_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 146
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1887945	1889121	2751401		Clostridium_phage(100.0%)	1	NA	NA
WP_000469832.1|1887945_1889121_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	8.8e-30
>prophage 147
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1894579	1895353	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078095.1|1894579_1895353_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	2.9e-13
>prophage 148
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1903389	1903989	2751401		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1903389_1903989_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 149
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1908927	1909908	2751401		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_117196835.1|1908927_1909908_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	37.9	6.0e-48
>prophage 150
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1913277	1914480	2751401		Tupanvirus(100.0%)	1	NA	NA
WP_001223709.1|1913277_1914480_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 151
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1922746	1926956	2751401		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1922746_1923727_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1923957_1924950_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924989.1|1924965_1925961_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136629.1|1925957_1926956_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	2.0e-14
>prophage 152
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1963415	1964483	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816129.1|1963415_1964483_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
>prophage 153
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1969724	1971425	2751401		Acidithiobacillus_phage(100.0%)	1	NA	NA
WP_000649663.1|1969724_1971425_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	26.8	4.1e-20
>prophage 154
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1976330	1986344	2751401		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|1976330_1977131_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104174.1|1977519_1978308_-	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_001060141.1|1978308_1979643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|1979635_1981462_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|1981474_1982176_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|1983381_1984665_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|1984943_1986344_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 155
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	1993034	2002074	2751401	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884334.1|1993034_1994321_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177457.1|1994699_1996214_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.5e-90
WP_000449218.1|1996539_1997352_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819079.1|1997439_2000103_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.8	1.3e-118
WP_000255578.1|2000139_2002074_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 156
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2012161	2015281	2751401		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|2012161_2013001_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2013317_2013671_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2013738_2014134_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054130.1|2014393_2014963_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2015080_2015281_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 157
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2021577	2022336	2751401		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2021577_2022336_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 158
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2039171	2040884	2751401		Planktothrix_phage(100.0%)	1	NA	NA
WP_070869632.1|2039171_2040884_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 159
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2046513	2047527	2751401		Faustovirus(100.0%)	1	NA	NA
WP_000639186.1|2046513_2047527_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 160
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2059968	2060661	2751401		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2059968_2060661_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 161
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2086772	2088632	2751401		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125609.1|2086772_2088632_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 162
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2114422	2116173	2751401		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143416.1|2114422_2115310_+	nisin susceptibility-associated two-component system sensor histidine kinase NsaS	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2115417_2116173_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 163
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2119595	2120093	2751401		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2119595_2120093_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 164
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2125126	2127510	2751401		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2125126_2126977_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000173331.1|2126973_2127510_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 165
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2132386	2142499	2751401	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066526.1|2132386_2134096_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.2	1.0e-58
WP_000011688.1|2134373_2134586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000708244.1|2134865_2135309_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172351.1|2135502_2137101_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	4.1e-78
WP_001791775.1|2137160_2137490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2137785_2139282_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031413.1|2139474_2140365_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	28.6	1.0e-06
WP_001237629.1|2140487_2140904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030073.1|2141161_2142499_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.7e-19
>prophage 166
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2171512	2175301	2751401		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751267.1|2171512_2172214_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	4.0e-38
WP_000996736.1|2172489_2172978_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379821.1|2173489_2175301_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 167
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2183733	2187785	2751401		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161366.1|2183733_2184732_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
WP_000076661.1|2184821_2185028_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024129.1|2185376_2187785_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.0	2.9e-128
>prophage 168
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2197025	2200061	2751401	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058988.1|2197025_2199131_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpL	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455993.1|2199539_2200061_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 169
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2206488	2212858	2751401		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|2206488_2208228_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473680.1|2208528_2210595_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|2210960_2211371_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240662.1|2211412_2211757_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228169.1|2211889_2212858_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	5.2e-12
>prophage 170
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2222146	2223139	2751401		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|2222146_2223139_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 171
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2232421	2233117	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000383666.1|2232421_2233117_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	1.2e-37
>prophage 172
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2252435	2260712	2751401		Streptococcus_phage(66.67%)	7	NA	NA
WP_000721331.1|2252435_2253302_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
WP_000966102.1|2253462_2254656_+	MFS transporter	NA	NA	NA	NA	NA
WP_072467493.1|2254636_2254870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000217717.1|2254986_2255295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072467492.1|2255975_2257787_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	38.2	2.4e-95
WP_000446879.1|2257904_2259374_+	DNA mismatch repair protein MutH	NA	NA	NA	NA	NA
WP_001033638.1|2259473_2260712_+	DNA (cytosine-5-)-methyltransferase	NA	A0A141E0F9	Streptococcus_phage	29.0	2.1e-29
>prophage 173
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2266057	2266753	2751401		Bacillus_phage(100.0%)	1	NA	NA
WP_000217465.1|2266057_2266753_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	6.6e-09
>prophage 174
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2271668	2272487	2751401		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824953.1|2271668_2272487_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	28.4	2.3e-08
>prophage 175
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2281210	2282768	2751401		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173858.1|2281210_2282026_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	3.0e-13
WP_000598774.1|2282018_2282768_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	5.3e-20
>prophage 176
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2289844	2294228	2751401		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923528.1|2289844_2290507_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.6	8.5e-22
WP_000072148.1|2290499_2291273_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000115415.1|2291624_2292809_+	MFS transporter	NA	NA	NA	NA	NA
WP_000704098.1|2292875_2294228_-	carboxylesterase/lipase family protein	NA	K7YIA2	Megavirus	29.7	4.3e-20
>prophage 177
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2297528	2299387	2751401		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948995.1|2297528_2298755_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000560003.1|2298751_2299387_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	1.1e-05
>prophage 178
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2317123	2323261	2751401		Bacillus_phage(66.67%)	5	NA	NA
WP_001176873.1|2317123_2318266_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.2	4.5e-55
WP_000779348.1|2318522_2318909_+	flippase GtxA	NA	NA	NA	NA	NA
WP_072467491.1|2319042_2319150_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064834.1|2319739_2321503_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	4.2e-36
WP_000486502.1|2321527_2323261_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.5	5.8e-30
>prophage 179
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2326722	2332493	2751401		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971550.1|2326722_2327838_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286877.1|2327848_2328541_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200948.1|2328551_2329019_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000783428.1|2329070_2330048_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916713.1|2330049_2330997_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.1	1.2e-138
WP_000594519.1|2331563_2332493_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 180
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2340372	2341104	2751401		Bacillus_virus(100.0%)	1	NA	NA
WP_000615470.1|2340372_2341104_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	5.3e-25
>prophage 181
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2357754	2359314	2751401		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2357754_2359314_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 182
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2380538	2381573	2751401		Bacillus_virus(100.0%)	1	NA	NA
WP_000655972.1|2380538_2381573_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 183
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2391432	2395329	2751401		Hokovirus(33.33%)	4	NA	NA
WP_000483465.1|2391432_2392806_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2392798_2393473_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761399.1|2393608_2394664_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2394663_2395329_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 184
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2399068	2400277	2751401		Salmonella_phage(100.0%)	1	NA	NA
WP_000999132.1|2399068_2400277_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.5	1.8e-33
>prophage 185
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2412356	2413256	2751401		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2412356_2413256_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 186
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2426077	2426959	2751401		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730043.1|2426077_2426959_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.2e-62
>prophage 187
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2434837	2435473	2751401		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2434837_2435473_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 188
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2448899	2453432	2751401		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000739224.1|2448899_2449676_+	glucosaminidase domain-containing protein	NA	H9A0P7	Staphylococcus_phage	41.0	3.8e-37
WP_000684141.1|2450400_2451525_+	FAD-dependent monooxygenase	NA	A0A2K9L3K5	Tupanvirus	22.8	5.5e-13
WP_000417016.1|2451616_2452570_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
WP_000737705.1|2452931_2453432_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 189
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2457348	2458152	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2457348_2458152_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 190
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2477097	2477703	2751401		Pithovirus(100.0%)	1	NA	NA
WP_000913018.1|2477097_2477703_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	5.0e-13
>prophage 191
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2489618	2492786	2751401		Leptospira_phage(100.0%)	1	NA	NA
WP_000592297.1|2489618_2492786_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.1	9.5e-63
>prophage 192
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2518212	2519879	2751401		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389653.1|2518212_2519022_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	9.7e-20
WP_000155392.1|2519018_2519879_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	5.7e-10
>prophage 193
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2523443	2525108	2751401		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_000130148.1|2523443_2525108_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.0	3.6e-45
>prophage 194
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2530201	2533217	2751401		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2530201_2531050_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_001566764.1|2531268_2531394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333458.1|2531584_2532193_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001566761.1|2532476_2533217_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.4	7.3e-14
>prophage 195
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2539538	2540951	2751401		Pandoravirus(100.0%)	1	NA	NA
WP_000169226.1|2539538_2540951_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.7	4.3e-47
>prophage 196
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2544919	2546482	2751401		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2544919_2546482_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 197
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2556685	2557654	2751401		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989091.1|2556685_2557654_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.3e-15
>prophage 198
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2573663	2574572	2751401		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2573663_2574572_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 199
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2578163	2585627	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_150030515.1|2578163_2585627_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	23.9	2.4e-19
>prophage 200
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2591883	2594703	2751401		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2591883_2593689_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908189.1|2593920_2594703_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	7.4e-09
>prophage 201
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2605894	2609726	2751401		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2605894_2606338_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2606458_2607169_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083311.1|2607483_2608146_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242318.1|2608424_2609726_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	2.7e-133
>prophage 202
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2617665	2619276	2751401		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2617665_2619276_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 203
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2627079	2634829	2751401		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2627079_2627679_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2627679_2628756_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248735.1|2628742_2629579_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000379892.1|2629662_2630709_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.4e-41
WP_000697334.1|2630705_2631125_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654185.1|2631231_2631756_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_150030516.1|2631782_2633021_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	1.1e-102
WP_000048712.1|2633048_2633678_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2633701_2634829_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 204
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2645288	2645684	2751401		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2645288_2645684_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 205
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2651753	2652401	2751401		Moumouvirus(100.0%)	1	NA	NA
WP_001187630.1|2651753_2652401_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	8.0e-09
>prophage 206
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2659601	2661122	2751401		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178938.1|2659601_2661122_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 207
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2666810	2668838	2751401		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546597.1|2666810_2668838_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 208
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2673988	2677372	2751401		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2673988_2674351_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_150030518.1|2674699_2675701_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2675819_2676146_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2676147_2676627_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041103.1|2676601_2677372_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 209
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2691320	2696044	2751401		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094576.1|2691320_2692850_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_000214552.1|2692879_2693884_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2694020_2694275_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047820.1|2694274_2696044_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	5.3e-63
>prophage 210
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2699804	2714244	2751401	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159053.1|2699804_2700830_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	5.8e-62
WP_000106325.1|2700931_2702542_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
WP_001792272.1|2703222_2703351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602069.1|2703495_2705424_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	2.4e-53
WP_001283612.1|2705676_2706312_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000266878.1|2706615_2707695_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2707754_2707979_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052259.1|2708186_2709437_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.0	3.4e-40
WP_000790326.1|2709619_2710570_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000141435.1|2710718_2712203_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.4	2.0e-18
WP_001253302.1|2712199_2713159_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688498.1|2713527_2714244_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	3.0e-25
>prophage 211
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2721388	2723365	2751401		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2721388_2721673_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2721748_2723365_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 212
NZ_AP020316	Staphylococcus aureus strain KUH140331	2751401	2728916	2750930	2751401	integrase	Staphylococcus_phage(95.35%)	43	2724255:2724271	2749219:2749235
2724255:2724271	attL	AATTTAGAACAAATATA	NA	NA	NA	NA
WP_000791418.1|2728916_2729972_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	31.8	1.8e-34
WP_000595393.1|2729993_2731010_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	3.0e-26
WP_150030519.1|2732128_2733166_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	7.7e-179
WP_017804779.1|2733358_2734063_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	99.6	6.7e-126
WP_031808066.1|2734202_2734370_-	hypothetical protein	NA	A0A1P8L6G5	Staphylococcus_phage	98.2	3.0e-24
WP_001083969.1|2734569_2735286_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDG6	Staphylococcus_phage	100.0	2.0e-130
WP_000639925.1|2735449_2735692_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	100.0	2.8e-39
WP_070046044.1|2735707_2736496_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.2	1.4e-143
WP_000435341.1|2736509_2736770_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|2736793_2737333_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_117207726.1|2737389_2738139_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.2	4.9e-135
WP_001148861.1|2738154_2738352_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|2738382_2738523_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|2738537_2739170_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|2739228_2739549_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|2739545_2739707_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000138304.1|2739796_2740126_+	hypothetical protein	NA	D2JGJ7	Staphylococcus_phage	100.0	1.4e-33
WP_031880059.1|2740106_2740367_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	97.7	3.8e-42
WP_001004336.1|2740379_2740916_+	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_000840496.1|2740916_2741567_+	ERF family protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099009.1|2741563_2742007_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	100.0	1.8e-76
WP_063456299.1|2742018_2742693_+	hypothetical protein	NA	A1KX69	Staphylococcus_virus	97.8	4.7e-129
WP_016028252.1|2742802_2743462_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_000190226.1|2743507_2744278_+	conserved phage C-terminal domain-containing protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
WP_117216985.1|2744287_2745061_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	99.2	3.9e-143
WP_015997089.1|2745054_2745213_+	hypothetical protein	NA	C5I646	Staphylococcus_phage	100.0	3.4e-22
WP_000049784.1|2745459_2745864_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001187242.1|2745868_2746054_+	DUF3113 family protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
WP_115282698.1|2746054_2746426_+	hypothetical protein	NA	C5I648	Staphylococcus_phage	95.1	1.8e-53
WP_000022720.1|2746425_2746683_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	100.0	5.7e-43
WP_000235326.1|2746685_2746886_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	98.5	7.4e-30
WP_117216382.1|2746894_2747143_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	95.1	7.5e-40
WP_001065074.1|2747156_2747408_+	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	100.0	9.2e-38
WP_000028424.1|2747397_2747571_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_000454994.1|2747571_2747853_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_172571785.1|2747853_2748015_+	hypothetical protein	NA	W5R9K6	Staphylococcus_phage	98.1	4.1e-23
WP_117216380.1|2748029_2748557_+	dUTP diphosphatase	NA	B2ZYX2	Staphylococcus_phage	89.1	2.1e-84
WP_000195810.1|2748593_2748800_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000595265.1|2748796_2748946_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|2749104_2749755_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
2749219:2749235	attR	AATTTAGAACAAATATA	NA	NA	NA	NA
WP_001794311.1|2749754_2749955_+	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2749982_2750399_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2750630_2750930_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
