assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	1	78927-79011	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	TGCAAGTTGGGGTGTGGGCCCCAACA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_5|NZ_AP020316.1_73593_73686_+,NA|37aa|up_1|NZ_AP020316.1_76691_76802_+,NA|138aa|up_0|NZ_AP020316.1_76830_77244_+,NA|129aa|down_1|NZ_AP020316.1_80224_80611_+,NA|92aa|down_6|NZ_AP020316.1_84592_84868_-	NA|454aa|up_9|NZ_AP020316.1_69378_70740_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_8|NZ_AP020316.1_70909_71440_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_7|NZ_AP020316.1_71686_72757_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_6|NZ_AP020316.1_72823_73378_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_5|NZ_AP020316.1_73593_73686_+	NA	NA|167aa|up_4|NZ_AP020316.1_73767_74268_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|NZ_AP020316.1_74559_75873_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|NZ_AP020316.1_75874_76606_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_1|NZ_AP020316.1_76691_76802_+	NA	NA|138aa|up_0|NZ_AP020316.1_76830_77244_+	NA	NA|253aa|down_0|NZ_AP020316.1_79249_80008_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_AP020316.1_80224_80611_+	NA	NA|234aa|down_2|NZ_AP020316.1_80625_81327_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_AP020316.1_81323_82367_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_AP020316.1_82356_82986_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_AP020316.1_83097_84315_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_AP020316.1_84592_84868_-	NA	NA|155aa|down_7|NZ_AP020316.1_84874_85339_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_AP020316.1_85485_85686_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_AP020316.1_85688_86945_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	2	792742-792827	2	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	792772-792797|792772-792797|792772-792797|792772-792797|792772-792797	NZ_AP020316.1_1180974-1180949|NZ_AP020316.1_1096357-1096382|NZ_AP020316.1_1225190-1225215|NZ_AP020316.1_1225246-1225271|NZ_AP020316.1_1225302-1225327	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|436aa|up_9|NZ_AP020316.1_778446_779754_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_8|NZ_AP020316.1_779909_781985_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_7|NZ_AP020316.1_782158_783031_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|415aa|up_6|NZ_AP020316.1_783203_784448_-	pfam02388, FemAB, FemAB family	NA|373aa|up_5|NZ_AP020316.1_784475_785594_-	pfam01476, LysM, LysM domain	NA|303aa|up_4|NZ_AP020316.1_785820_786729_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_3|NZ_AP020316.1_786750_787917_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|256aa|up_2|NZ_AP020316.1_788025_788793_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|295aa|up_1|NZ_AP020316.1_788776_789661_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|869aa|up_0|NZ_AP020316.1_790061_792668_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_0|NZ_AP020316.1_793137_793488_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_1|NZ_AP020316.1_793590_794328_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|down_2|NZ_AP020316.1_794327_794831_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|down_3|NZ_AP020316.1_795018_795294_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|down_4|NZ_AP020316.1_795728_797096_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_5|NZ_AP020316.1_797121_797454_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|down_6|NZ_AP020316.1_797440_798691_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|down_7|NZ_AP020316.1_798690_802257_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|down_8|NZ_AP020316.1_802403_803135_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_9|NZ_AP020316.1_803250_803484_-	PRK00982, acpP, acyl carrier protein; Provisional
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	3	882554-882749	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTGCA	27	3	11	882581-882609|882581-882609|882581-882609|882581-882609|882581-882609|882581-882609|882581-882609|882637-882666|882694-882722|882694-882722|882694-882722	NZ_AP020316.1_667293-667321|NZ_AP020316.1_792808-792836|NZ_AP020316.1_878613-878641|NZ_AP020316.1_979694-979666|NZ_AP020316.1_1180768-1180740|NZ_AP020316.1_1180938-1180910|NZ_AP020316.1_2450011-2450039|NZ_AP020316.1_882749-882778|NZ_AP020316.1_882750-882778|NZ_AP020316.1_77526-77498|NZ_AP020316.1_2718210-2718182	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|75aa|up_4|NZ_AP020316.1_878871_879096_-,NA|49aa|up_3|NZ_AP020316.1_879052_879199_-,NA|78aa|up_1|NZ_AP020316.1_881307_881541_+,NA|62aa|up_0|NZ_AP020316.1_882162_882348_+,NA|169aa|down_2|NZ_AP020316.1_884372_884879_-,NA|24aa|down_4|NZ_AP020316.1_885927_885999_+,NA|56aa|down_6|NZ_AP020316.1_886839_887007_-	NA|311aa|up_9|NZ_AP020316.1_873608_874541_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_8|NZ_AP020316.1_874563_875565_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_7|NZ_AP020316.1_876002_876728_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_6|NZ_AP020316.1_876822_877548_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_5|NZ_AP020316.1_877655_878372_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_4|NZ_AP020316.1_878871_879096_-	NA	NA|49aa|up_3|NZ_AP020316.1_879052_879199_-	NA	NA|320aa|up_2|NZ_AP020316.1_879871_880831_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_1|NZ_AP020316.1_881307_881541_+	NA	NA|62aa|up_0|NZ_AP020316.1_882162_882348_+	NA	NA|117aa|down_0|NZ_AP020316.1_883112_883463_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_AP020316.1_883616_884114_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_AP020316.1_884372_884879_-	NA	NA|132aa|down_3|NZ_AP020316.1_885551_885947_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_4|NZ_AP020316.1_885927_885999_+	NA	NA|110aa|down_5|NZ_AP020316.1_886316_886646_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|NZ_AP020316.1_886839_887007_-	NA	NA|168aa|down_7|NZ_AP020316.1_887134_887638_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|NZ_AP020316.1_887630_888218_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|NZ_AP020316.1_888229_889030_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	4	901667-901758	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|32aa|up_5|NZ_AP020316.1_894783_894879_+,NA|359aa|down_7|NZ_AP020316.1_909933_911010_-	NA|272aa|up_9|NZ_AP020316.1_889265_890081_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_AP020316.1_890080_891847_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_AP020316.1_891898_892513_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_AP020316.1_892836_894618_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_AP020316.1_894783_894879_+	NA	NA|105aa|up_4|NZ_AP020316.1_894941_895256_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_AP020316.1_895428_897777_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_AP020316.1_897786_899499_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_AP020316.1_899571_900093_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_AP020316.1_900093_900360_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_AP020316.1_901977_904380_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_AP020316.1_904379_905438_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_AP020316.1_905817_906558_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|108aa|down_3|NZ_AP020316.1_906942_907266_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_4|NZ_AP020316.1_907284_908019_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_5|NZ_AP020316.1_908080_909049_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_6|NZ_AP020316.1_909058_909937_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_7|NZ_AP020316.1_909933_911010_-	NA	NA|228aa|down_8|NZ_AP020316.1_911009_911693_-	TIGR03656, IsdC, heme uptake protein IsdC	NA|351aa|down_9|NZ_AP020316.1_911901_912954_+	COG5386, COG5386, Cell surface protein [Cell envelope biogenesis, outer membrane]
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	5	1096360-1096438	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_AP020316.1_1080306_1081209_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_AP020316.1_1081374_1085028_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_AP020316.1_1085028_1088505_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_AP020316.1_1088664_1089240_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_AP020316.1_1089255_1089780_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_AP020316.1_1089784_1090360_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_AP020316.1_1090684_1092016_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_AP020316.1_1092366_1093572_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_AP020316.1_1093561_1094941_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_AP020316.1_1095182_1096112_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_AP020316.1_1096562_1097807_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_AP020316.1_1097915_1099106_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_AP020316.1_1099414_1100542_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_AP020316.1_1100903_1101281_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_AP020316.1_1101696_1102290_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_AP020316.1_1102353_1102737_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_AP020316.1_1102867_1105273_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_AP020316.1_1105265_1105694_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_AP020316.1_1105693_1106035_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_AP020316.1_1106027_1107524_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	6	1188082-1188168	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAATGCGAGTTGGGGTGTGGGCCCCAACA	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|254aa|up_9|NZ_AP020316.1_1176055_1176817_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_AP020316.1_1176938_1178129_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_AP020316.1_1178266_1179277_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_AP020316.1_1179329_1180343_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_AP020316.1_1181210_1181840_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_AP020316.1_1182542_1183445_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_AP020316.1_1183687_1184275_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_AP020316.1_1184847_1185792_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_AP020316.1_1185902_1186898_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_AP020316.1_1186894_1187806_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_AP020316.1_1188628_1189564_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_AP020316.1_1189630_1191070_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_AP020316.1_1191077_1191563_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_AP020316.1_1191570_1192410_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_AP020316.1_1192415_1193348_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_AP020316.1_1193899_1196746_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_AP020316.1_1196753_1198739_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_AP020316.1_1199007_1199244_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_AP020316.1_1199240_1199891_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_AP020316.1_1200064_1200904_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	7	1287523-1287621	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|100aa|up_5|NZ_AP020316.1_1283542_1283842_-,NA|230aa|up_2|NZ_AP020316.1_1285011_1285701_+,NA|39aa|down_2|NZ_AP020316.1_1289476_1289593_-	NA|228aa|up_9|NZ_AP020316.1_1281112_1281796_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|NZ_AP020316.1_1281798_1282257_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|NZ_AP020316.1_1282258_1282825_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|NZ_AP020316.1_1282920_1283463_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|NZ_AP020316.1_1283542_1283842_-	NA	NA|132aa|up_4|NZ_AP020316.1_1283979_1284375_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|148aa|up_3|NZ_AP020316.1_1284441_1284885_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|NZ_AP020316.1_1285011_1285701_+	NA	NA|163aa|up_1|NZ_AP020316.1_1285799_1286288_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_AP020316.1_1286284_1287505_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_AP020316.1_1287705_1288572_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_AP020316.1_1288687_1289332_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_AP020316.1_1289476_1289593_-	NA	NA|158aa|down_3|NZ_AP020316.1_1289684_1290158_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_AP020316.1_1290157_1290874_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_AP020316.1_1291063_1291423_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_AP020316.1_1291568_1293719_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_AP020316.1_1294415_1295060_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_AP020316.1_1295420_1296218_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_AP020316.1_1296805_1297813_-	pfam01384, PHO4, Phosphate transporter family
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	8	1350458-1350551	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_AP020316.1_1345284_1346001_-,NA|169aa|up_4|NZ_AP020316.1_1346162_1346669_-,NA	NA|75aa|up_9|NZ_AP020316.1_1341405_1341630_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_AP020316.1_1341824_1342754_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_AP020316.1_1343701_1344076_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_AP020316.1_1344327_1345116_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_AP020316.1_1345284_1346001_-	NA	NA|169aa|up_4|NZ_AP020316.1_1346162_1346669_-	NA	NA|267aa|up_3|NZ_AP020316.1_1346804_1347605_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_AP020316.1_1347588_1348308_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_AP020316.1_1348362_1349313_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_AP020316.1_1349461_1350349_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_AP020316.1_1350666_1351302_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_AP020316.1_1351571_1353233_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_AP020316.1_1353229_1353646_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_AP020316.1_1353921_1354932_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_AP020316.1_1355430_1355952_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_AP020316.1_1355979_1357275_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_AP020316.1_1357314_1357791_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_AP020316.1_1357958_1358495_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_AP020316.1_1358705_1359644_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_AP020316.1_1359913_1360540_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	9	1863328-1863409	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCAACTTGCATTGTCTGTAGAA	23	1	1	1863351-1863386	NZ_AP020316.1_953293-953258	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|68aa|up_0|NZ_AP020316.1_1863059_1863263_+,NA	NA|2392aa|up_9|NZ_AP020316.1_1847466_1854642_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|417aa|up_8|NZ_AP020316.1_1855088_1856339_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|342aa|up_7|NZ_AP020316.1_1856722_1857748_-	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|120aa|up_6|NZ_AP020316.1_1857920_1858280_-	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|344aa|up_5|NZ_AP020316.1_1858496_1859528_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|254aa|up_4|NZ_AP020316.1_1859540_1860302_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|325aa|up_3|NZ_AP020316.1_1860298_1861273_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|up_2|NZ_AP020316.1_1861286_1862027_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|171aa|up_1|NZ_AP020316.1_1862368_1862881_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|68aa|up_0|NZ_AP020316.1_1863059_1863263_+	NA	NA|320aa|down_0|NZ_AP020316.1_1863557_1864517_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|496aa|down_1|NZ_AP020316.1_1865162_1866650_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|128aa|down_2|NZ_AP020316.1_1867076_1867460_+	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|109aa|down_3|NZ_AP020316.1_1867466_1867793_+	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|382aa|down_4|NZ_AP020316.1_1867857_1869003_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|421aa|down_5|NZ_AP020316.1_1869079_1870342_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|296aa|down_6|NZ_AP020316.1_1870395_1871283_-	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|186aa|down_7|NZ_AP020316.1_1871282_1871840_-	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|402aa|down_8|NZ_AP020316.1_1871850_1873056_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|413aa|down_9|NZ_AP020316.1_1873089_1874328_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	10	2054003-2054137	10	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGGGTGGGACGACAAA	24	2	14	2054027-2054058|2054027-2054058|2054027-2054058|2054027-2054058|2054027-2054058|2054027-2054058|2054083-2054113|2054083-2054113|2054083-2054113|2054083-2054113|2054083-2054113|2054083-2054113|2054083-2054113|2054083-2054113	NZ_AP020316.1_1180737-1180768|NZ_AP020316.1_1180907-1180938|NZ_AP020316.1_1745122-1745091|NZ_AP020316.1_385477-385446|NZ_AP020316.1_1096368-1096337|NZ_AP020316.1_1180963-1180994|NZ_AP020316.1_1234734-1234704|NZ_AP020316.1_2449985-2449955|NZ_AP020316.1_2642181-2642151|NZ_AP020316.1_578967-578997|NZ_AP020316.1_953275-953305|NZ_AP020316.1_1144862-1144892|NZ_AP020316.1_1188171-1188201|NZ_AP020316.1_2053972-2054002	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|273aa|up_9|NZ_AP020316.1_2043804_2044623_+	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional	NA|205aa|up_8|NZ_AP020316.1_2044640_2045255_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_7|NZ_AP020316.1_2045247_2046498_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_6|NZ_AP020316.1_2046513_2047527_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_5|NZ_AP020316.1_2047495_2048074_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_4|NZ_AP020316.1_2048070_2048649_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_3|NZ_AP020316.1_2048641_2049346_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_2|NZ_AP020316.1_2049342_2050101_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_1|NZ_AP020316.1_2050097_2050730_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|681aa|up_0|NZ_AP020316.1_2051812_2053855_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_AP020316.1_2054301_2055354_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_AP020316.1_2055340_2056213_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_AP020316.1_2056209_2056515_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_AP020316.1_2056478_2057717_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_AP020316.1_2057880_2058441_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_AP020316.1_2059289_2059952_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_AP020316.1_2059968_2060661_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_AP020316.1_2060657_2061425_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_AP020316.1_2061659_2062160_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_AP020316.1_2062162_2062639_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	11	2185101-2185208	11	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTGTAAACCGTAGTGTACTTATTATTTATAATAAT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|163aa|up_6|NZ_AP020316.1_2176603_2177092_+,NA|64aa|down_1|NZ_AP020316.1_2188024_2188216_-,NA|56aa|down_4|NZ_AP020316.1_2190899_2191067_+	NA|163aa|up_9|NZ_AP020316.1_2172489_2172978_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|604aa|up_8|NZ_AP020316.1_2173489_2175301_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|256aa|up_7|NZ_AP020316.1_2175661_2176429_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|163aa|up_6|NZ_AP020316.1_2176603_2177092_+	NA	NA|498aa|up_5|NZ_AP020316.1_2177084_2178578_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_4|NZ_AP020316.1_2178583_2179711_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|288aa|up_3|NZ_AP020316.1_2179747_2180611_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|385aa|up_2|NZ_AP020316.1_2182556_2183711_+	PRK08068, PRK08068, transaminase; Reviewed	NA|333aa|up_1|NZ_AP020316.1_2183733_2184732_+	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|69aa|up_0|NZ_AP020316.1_2184821_2185028_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|803aa|down_0|NZ_AP020316.1_2185376_2187785_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|64aa|down_1|NZ_AP020316.1_2188024_2188216_-	NA	NA|200aa|down_2|NZ_AP020316.1_2188454_2189054_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|515aa|down_3|NZ_AP020316.1_2189243_2190788_+	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|56aa|down_4|NZ_AP020316.1_2190899_2191067_+	NA	NA|183aa|down_5|NZ_AP020316.1_2191142_2191691_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|830aa|down_6|NZ_AP020316.1_2191835_2194325_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|76aa|down_7|NZ_AP020316.1_2194540_2194768_+	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|665aa|down_8|NZ_AP020316.1_2194779_2196774_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|57aa|down_9|NZ_AP020316.1_2196786_2196957_+	pfam12669, P12, Virus attachment protein p12 family
GCF_008619795.1_ASM861979v1	NZ_AP020316	Staphylococcus aureus strain KUH140331	12	2597563-2597653	12	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|53aa|up_1|NZ_AP020316.1_2596285_2596444_-,NA|35aa|up_0|NZ_AP020316.1_2597123_2597228_+,NA|364aa|down_0|NZ_AP020316.1_2597669_2598761_-,NA|77aa|down_5|NZ_AP020316.1_2602548_2602779_+	NA|2488aa|up_9|NZ_AP020316.1_2578163_2585627_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_AP020316.1_2585945_2587052_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_AP020316.1_2587051_2587486_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_AP020316.1_2587497_2589630_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_AP020316.1_2589664_2591203_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_AP020316.1_2591883_2593689_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_AP020316.1_2593920_2594703_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_AP020316.1_2594770_2595628_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_AP020316.1_2596285_2596444_-	NA	NA|35aa|up_0|NZ_AP020316.1_2597123_2597228_+	NA	NA|364aa|down_0|NZ_AP020316.1_2597669_2598761_-	NA	NA|327aa|down_1|NZ_AP020316.1_2599026_2600007_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_AP020316.1_2600008_2600329_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_AP020316.1_2600480_2601146_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_AP020316.1_2601579_2602518_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_AP020316.1_2602548_2602779_+	NA	NA|458aa|down_6|NZ_AP020316.1_2603450_2604824_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_AP020316.1_2605281_2605695_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_AP020316.1_2605894_2606338_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_AP020316.1_2606458_2607169_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
