assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008386295.1_ASM838629v1	NZ_CP043773	Salmonella enterica strain QH chromosome, complete genome	1	599324-599424	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA|177aa|down_1|NZ_CP043773.1_600942_601473_-,NA|65aa|down_4|NZ_CP043773.1_603413_603608_+	NA|470aa|up_9|NZ_CP043773.1_585411_586821_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP043773.1_587382_587835_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP043773.1_587862_589365_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP043773.1_589389_592068_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP043773.1_592288_592690_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP043773.1_592689_593634_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP043773.1_593784_594054_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP043773.1_594295_596431_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP043773.1_596540_597425_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP043773.1_597530_597611_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP043773.1_599637_600882_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP043773.1_600942_601473_-	NA	NA|240aa|down_2|NZ_CP043773.1_601631_602351_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP043773.1_602328_603336_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|65aa|down_4|NZ_CP043773.1_603413_603608_+	NA	NA|299aa|down_5|NZ_CP043773.1_603513_604410_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_6|NZ_CP043773.1_604400_605396_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_7|NZ_CP043773.1_605612_606137_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_8|NZ_CP043773.1_606130_606634_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_9|NZ_CP043773.1_606620_606938_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated
GCF_008386295.1_ASM838629v1	NZ_CP043773	Salmonella enterica strain QH chromosome, complete genome	2	952096-952795	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|179aa|up_9|NZ_CP043773.1_940642_941179_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP043773.1_941175_941646_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP043773.1_941660_942167_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP043773.1_942186_942960_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP043773.1_942972_945672_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP043773.1_945751_946339_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP043773.1_946945_947746_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP043773.1_947973_949611_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP043773.1_949693_950992_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP043773.1_951127_951799_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|419aa|down_0|NZ_CP043773.1_952844_954100_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|266aa|down_1|NZ_CP043773.1_954207_955005_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_2|NZ_CP043773.1_955094_955457_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_3|NZ_CP043773.1_955880_957680_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|NZ_CP043773.1_957679_959392_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|NZ_CP043773.1_959467_960202_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|NZ_CP043773.1_960289_961243_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|NZ_CP043773.1_961687_964351_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_8|NZ_CP043773.1_964362_965922_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_9|NZ_CP043773.1_965918_966467_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCF_008386295.1_ASM838629v1	NZ_CP043773	Salmonella enterica strain QH chromosome, complete genome	3	970235-970812	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCNAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,7	9	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	NA,NA	NA|245aa|up_9|NZ_CP043773.1_959467_960202_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP043773.1_960289_961243_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP043773.1_961687_964351_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP043773.1_964362_965922_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|NZ_CP043773.1_965918_966467_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP043773.1_966480_967539_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP043773.1_967549_968296_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP043773.1_968277_968928_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP043773.1_968924_969845_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP043773.1_969844_970138_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP043773.1_970826_971873_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP043773.1_972123_973032_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP043773.1_973041_974481_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP043773.1_974467_975073_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP043773.1_975090_975447_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP043773.1_975637_975949_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP043773.1_975967_976678_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP043773.1_976677_977157_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP043773.1_977153_978203_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP043773.1_978183_978945_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
