The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043557	Vibrio cholerae strain RFB05 chromosome 1, complete sequence	3162181	295341	302408	3162181		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|295341_295770_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_113591192.1|295847_297137_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|297356_297551_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|297599_297938_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_113591193.1|297951_299802_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	9.1e-106
WP_113591194.1|299825_300341_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|300389_300713_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|300773_301157_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775249.1|301193_302408_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
>prophage 2
NZ_CP043557	Vibrio cholerae strain RFB05 chromosome 1, complete sequence	3162181	536335	543586	3162181		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_113624078.1|536335_537223_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.8	2.7e-55
WP_113591583.1|537489_540078_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	9.9e-34
WP_089071941.1|540156_541167_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_113598347.1|541240_542176_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	4.6e-05
WP_089071943.1|542175_542802_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_001883363.1|542794_543586_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
>prophage 3
NZ_CP043557	Vibrio cholerae strain RFB05 chromosome 1, complete sequence	3162181	917264	923993	3162181		Enterobacteria_phage(50.0%)	7	NA	NA
WP_149560902.1|917264_918656_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.5	8.9e-05
WP_113624440.1|918591_919407_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000864155.1|919411_919963_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	60.5	2.0e-53
WP_113624439.1|919962_920853_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	1.1e-35
WP_000676094.1|920849_921728_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.9	4.2e-109
WP_113599778.1|921751_922816_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.9	8.1e-99
WP_000587803.1|923054_923993_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	35.2	2.1e-34
>prophage 4
NZ_CP043557	Vibrio cholerae strain RFB05 chromosome 1, complete sequence	3162181	1786032	1792651	3162181		Staphylococcus_phage(66.67%)	7	NA	NA
WP_089070822.1|1786032_1787166_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_080007872.1|1787174_1788428_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|1788528_1788978_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_113623778.1|1789003_1790107_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.8	5.0e-43
WP_000493874.1|1790111_1790765_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|1790805_1791915_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|1792180_1792651_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 1
NZ_CP043558	Vibrio cholerae strain RFB05 chromosome 2, complete sequence	1195141	522596	602581	1195141	protease,transposase,plate	uncultured_Caudovirales_phage(14.29%)	57	NA	NA
WP_113624103.1|522596_525353_+|protease	M6 family metalloprotease PrtV	protease	NA	NA	NA	NA
WP_089070339.1|525502_527149_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	3.6e-21
WP_113602724.1|527432_529658_-	cytolysin VCC	NA	NA	NA	NA	NA
WP_113598296.1|530379_531636_+	thermolabile hemolysin	NA	NA	NA	NA	NA
WP_089070336.1|531738_532005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089070335.1|532218_533463_+	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA	NA
WP_113591591.1|533857_535447_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_089070333.1|535524_536499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113598299.1|536635_538582_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_089070331.1|538612_540154_-	DUF3369 domain-containing protein	NA	NA	NA	NA	NA
WP_089070330.1|540308_540836_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_113624352.1|540938_541769_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.4	4.1e-58
WP_113604714.1|542016_543345_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_113624351.1|543536_544931_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.7e-48
WP_113591586.1|545006_546050_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
WP_113591585.1|546214_546592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113591584.1|546696_547245_+	porin family protein	NA	NA	NA	NA	NA
WP_113624474.1|548726_549941_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_113624475.1|549983_550916_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2I4R674	Erysipelothrix_phage	30.6	1.6e-10
WP_113609503.1|550922_552254_-	ferric reductase	NA	NA	NA	NA	NA
WP_095464774.1|552403_552910_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.3	9.0e-16
WP_113624476.1|553057_556795_-	peptidase M66	NA	NA	NA	NA	NA
WP_113624477.1|557165_558377_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_113624478.1|558373_560515_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_113624479.1|560688_561696_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_113624480.1|561997_563350_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_113624481.1|563639_565694_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.9	3.0e-09
WP_113624482.1|565807_566977_-	Spindolin	NA	A0A288Q818	Cyclophragma_undans_nucleopolyhedrovirus	32.6	1.7e-28
WP_089070031.1|567545_567893_+	DUF3316 domain-containing protein	NA	NA	NA	NA	NA
WP_149560983.1|568313_569672_+	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
WP_113598088.1|569825_570893_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_113592197.1|570945_571626_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_113592196.1|571765_572497_-	nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000365210.1|572493_573228_-	nicotinamide riboside transporter PnuC	NA	A0A1L2CV72	Pectobacterium_phage	22.1	5.0e-07
WP_095465805.1|573353_574358_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_113602691.1|574368_575289_-	ribokinase	NA	E3SL45	Synechococcus_phage	37.6	7.7e-05
WP_001885121.1|575427_576312_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	23.0	9.6e-05
WP_081018600.1|576366_577368_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_113592193.1|577364_578867_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	1.4e-16
WP_000749918.1|578893_579313_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_113592192.1|579594_579855_+	DUF3012 domain-containing protein	NA	NA	NA	NA	NA
WP_113598079.1|579896_580250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113598078.1|580373_580757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113602255.1|580753_583876_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	25.6	6.2e-30
WP_113599425.1|584126_585392_-	type VI secretion protein	NA	NA	NA	NA	NA
WP_001882971.1|585439_588985_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000426086.1|589000_590410_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_095466369.1|590419_591103_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_113592300.1|591072_592665_-	AAA domain-containing protein	NA	NA	NA	NA	NA
WP_113602256.1|592667_595277_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.9	1.7e-89
WP_113602257.1|595302_596076_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000458007.1|596078_597413_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_089070043.1|597419_597896_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_113602258.1|597898_599386_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_113592304.1|599388_600405_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_113599429.1|600368_602138_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000220999.1|602143_602581_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 2
NZ_CP043558	Vibrio cholerae strain RFB05 chromosome 2, complete sequence	1195141	974102	1006367	1195141	bacteriocin,portal,terminase,integrase	Vibrio_phage(47.83%)	34	973381:973395	984087:984101
973381:973395	attL	ATCAAAAATGGCATC	NA	NA	NA	NA
WP_149560988.1|974102_976601_+	DEAD/DEAH box helicase	NA	A0A0N9R1K5	Chrysochromulina_ericina_virus	25.0	7.2e-05
WP_149560989.1|976597_977455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113624300.1|978101_979325_-|integrase	site-specific integrase	integrase	R9TMP3	Vibrio_phage	78.1	1.5e-189
WP_000083583.1|979306_979489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113624299.1|979494_979758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113624298.1|979976_980642_-	helix-turn-helix domain-containing protein	NA	A0A1V0E8B5	Vibrio_phage	60.1	2.9e-70
WP_113624297.1|980760_980997_+	helix-turn-helix transcriptional regulator	NA	A0A1V0E8C7	Vibrio_phage	68.7	8.2e-20
WP_001260051.1|981040_981298_+	hypothetical protein	NA	R9TMN6	Vibrio_phage	69.4	7.3e-22
WP_113624296.1|981630_982599_+	helix-turn-helix domain-containing protein	NA	R9TPU9	Vibrio_phage	56.5	6.7e-92
WP_113624295.1|982662_983481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113624294.1|983594_984440_+	hypothetical protein	NA	A0A2R2Z334	Escherichia_phage	27.0	4.9e-14
984087:984101	attR	GATGCCATTTTTGAT	NA	NA	NA	NA
WP_113591657.1|984432_986130_+|terminase	terminase	terminase	B0FEF1	Escherichia_phage	65.6	1.4e-217
WP_113591658.1|986126_988214_+|portal	portal protein	portal	A0A088CE71	Shigella_phage	58.3	4.0e-203
WP_113597554.1|988572_989436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001128531.1|989770_990082_+	membrane protein	NA	R9TR41	Vibrio_phage	47.4	2.2e-20
WP_113597555.1|990150_990669_+	secretion activator protein	NA	Q6VT55	Vibrio_phage	63.2	4.0e-59
WP_000835321.1|991112_991334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000228289.1|991336_991915_+	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	36.9	7.9e-24
WP_113602788.1|991926_992187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113602789.1|992304_993309_+	ATPase	NA	A0A1I9KFD1	Aeromonas_phage	32.6	9.8e-22
WP_000207893.1|993371_994577_+	DUF4043 family protein	NA	A0A088CC32	Shigella_phage	58.3	2.7e-135
WP_000149719.1|994591_994972_+	hypothetical protein	NA	M4MCI2	Vibrio_phage	31.1	1.8e-08
WP_113597558.1|995029_995494_+	hypothetical protein	NA	A0A1I9KFH0	Aeromonas_phage	56.4	2.1e-27
WP_113597559.1|995496_996096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000117294.1|996095_996725_+	hypothetical protein	NA	A0A1I9KFD0	Aeromonas_phage	33.3	1.5e-23
WP_113597560.1|996739_999244_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A240EWW2	Vibrio_phage	31.2	3.9e-19
WP_113592252.1|999316_1000924_+	hypothetical protein	NA	A0A1I9KFD2	Aeromonas_phage	45.8	1.2e-130
WP_113592253.1|1000923_1002900_+	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	33.7	1.0e-54
WP_113592254.1|1002904_1003267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113592263.1|1003307_1003649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113592255.1|1003648_1004299_+	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	45.2	3.4e-39
WP_113592256.1|1004302_1004680_+	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	45.0	3.2e-18
WP_113592257.1|1004682_1004943_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_113597562.1|1004942_1006367_+	ATPase	NA	M4MHC7	Vibrio_phage	37.0	3.2e-42
