The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043554	Vibrio cholerae strain RFB16 chromosome 1, complete sequence	2948589	604727	611345	2948589		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|604727_605861_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366562.1|605872_607123_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|607222_607672_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_149560198.1|607697_608801_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.8	2.2e-43
WP_000493874.1|608805_609459_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|609499_610609_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|610874_611345_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP043554	Vibrio cholerae strain RFB16 chromosome 1, complete sequence	2948589	2178772	2185965	2948589		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2178772_2179201_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107241.1|2179404_2180694_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_000872174.1|2180913_2181108_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2181156_2181495_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196554.1|2181508_2183359_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	7.0e-106
WP_001105749.1|2183382_2183898_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2183946_2184270_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2184330_2184714_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775249.1|2184750_2185965_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
>prophage 3
NZ_CP043554	Vibrio cholerae strain RFB16 chromosome 1, complete sequence	2948589	2417822	2425047	2948589		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_149560480.1|2417822_2418710_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.4	1.4e-56
WP_033838995.1|2418977_2421566_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	5.8e-34
WP_000116735.1|2421659_2422667_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177559.1|2422740_2423676_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2423675_2424302_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_172626019.1|2424294_2425047_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	1.8e-68
>prophage 4
NZ_CP043554	Vibrio cholerae strain RFB16 chromosome 1, complete sequence	2948589	2781575	2789144	2948589		Enterobacteria_phage(42.86%)	8	NA	NA
WP_102786273.1|2781575_2782451_-	class I SAM-dependent methyltransferase	NA	A0A0E3FM84	Synechococcus_phage	28.9	4.9e-09
WP_102786272.1|2782443_2783742_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.8	1.4e-12
WP_102786271.1|2783731_2784535_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_102786270.1|2784553_2785114_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	56.7	1.1e-54
WP_102786269.1|2785113_2786004_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.3	1.9e-37
WP_069212354.1|2786000_2786879_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.2	6.4e-110
WP_149560535.1|2786902_2787967_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.6	2.3e-98
WP_000587803.1|2788205_2789144_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	35.2	2.1e-34
>prophage 1
NZ_CP043556	Vibrio cholerae strain RFB16 chromosome 2, complete sequence	1140710	2437	10989	1140710	coat	Vibrio_phage(100.0%)	9	NA	NA
WP_149560621.1|2437_2809_+	regulator	NA	R9TI53	Vibrio_phage	100.0	1.6e-65
WP_050926084.1|2816_4145_-	type II secretory pathway protein	NA	R9TEZ5	Vibrio_phage	99.8	4.1e-241
WP_149560622.1|4125_5211_-	hypothetical protein	NA	O80263	Vibrio_phage	97.2	1.3e-205
WP_050926082.1|5215_5587_-|coat	minor coat protein	coat	R9TIT8	Vibrio_phage	99.2	2.4e-58
WP_015979784.1|7164_7386_-	hypothetical protein	NA	R9TI50	Vibrio_phage	100.0	3.1e-29
WP_015979781.1|7653_7968_-	hypothetical protein	NA	R9TIT5	Vibrio_phage	100.0	5.7e-53
WP_149560623.1|8020_10117_-	replication endonuclease	NA	R9TE46	Vibrio_phage	98.0	0.0e+00
WP_149560624.1|10116_10383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560868.1|10620_10989_+	hypothetical protein	NA	Q858Q3	Vibrio_phage	98.3	1.8e-61
>prophage 2
NZ_CP043556	Vibrio cholerae strain RFB16 chromosome 2, complete sequence	1140710	353160	369733	1140710	holin	Vibrio_phage(42.86%)	22	NA	NA
WP_149560684.1|353160_354561_-	ATPase	NA	M4MHC7	Vibrio_phage	36.6	7.0e-42
WP_000331793.1|354560_354821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560685.1|354823_355201_-	hypothetical protein	NA	A0A1I9KFD7	Aeromonas_phage	44.2	5.5e-18
WP_149560686.1|355204_355855_-	hypothetical protein	NA	A0A1I9KFE8	Aeromonas_phage	45.7	4.0e-40
WP_149560871.1|355854_356196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148517858.1|356236_356599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560687.1|356603_358580_-	DUF1983 domain-containing protein	NA	A0A2L1IV54	Escherichia_phage	33.4	2.3e-54
WP_149560688.1|358579_360187_-	hypothetical protein	NA	A0A1I9KFD2	Aeromonas_phage	45.6	7.8e-130
WP_149560872.1|360258_362763_-	right-handed parallel beta-helix repeat-containing protein	NA	A0A240EWW2	Vibrio_phage	31.6	1.3e-19
WP_149560689.1|362777_363407_-	hypothetical protein	NA	A0A1I9KFD0	Aeromonas_phage	33.3	3.3e-23
WP_149560690.1|363406_364006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560691.1|364008_364473_-	hypothetical protein	NA	A0A1I9KFH0	Aeromonas_phage	55.0	4.7e-27
WP_142993510.1|364530_364911_-	hypothetical protein	NA	M4MCI2	Vibrio_phage	31.1	1.4e-08
WP_000207893.1|364925_366131_-	DUF4043 family protein	NA	A0A088CC32	Shigella_phage	58.3	2.7e-135
WP_142577038.1|366193_367198_-	ATPase	NA	A0A1I9KFD1	Aeromonas_phage	32.9	1.2e-22
WP_001995215.1|367315_367576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000228309.1|367587_368166_-	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	36.9	7.9e-24
WP_001915113.1|368168_368390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001007095.1|368484_368661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000359320.1|368665_368824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560692.1|368833_369352_-	secretion activator protein	NA	Q6VT55	Vibrio_phage	62.6	1.4e-59
WP_001128531.1|369421_369733_-|holin	phage holin family protein	holin	R9TR41	Vibrio_phage	47.4	2.2e-20
>prophage 3
NZ_CP043556	Vibrio cholerae strain RFB16 chromosome 2, complete sequence	1140710	377018	388938	1140710	terminase,portal	Vibrio_phage(50.0%)	13	NA	NA
WP_149560696.1|377018_378275_-	DUF4113 domain-containing protein	NA	I6RSM4	Salmonella_phage	41.6	6.4e-87
WP_000864710.1|378274_378682_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	48.3	3.8e-25
WP_149560697.1|378842_380930_-|portal	portal protein	portal	A0A088CE71	Shigella_phage	58.7	7.4e-205
WP_149560698.1|380926_382624_-|terminase	terminase	terminase	B0FEF1	Escherichia_phage	65.4	3.4e-216
WP_149560699.1|382616_383462_-	hypothetical protein	NA	A0A2R2Z334	Escherichia_phage	26.4	1.1e-13
WP_149560700.1|383575_384394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149560701.1|384457_385426_-	helix-turn-helix domain-containing protein	NA	R9TPU9	Vibrio_phage	56.5	3.0e-92
WP_000532438.1|385594_385759_-	hypothetical protein	NA	R9TR53	Vibrio_phage	56.0	5.5e-07
WP_000844441.1|386046_386241_-	hypothetical protein	NA	R9TPV3	Vibrio_phage	81.2	6.9e-25
WP_000196481.1|386316_387030_+	helix-turn-helix domain-containing protein	NA	R9TNM0	Vibrio_phage	85.3	3.7e-116
WP_113599605.1|387281_387545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000083583.1|387550_387733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_113599606.1|387714_388938_+	DUF3596 domain-containing protein	NA	R9TMP3	Vibrio_phage	77.4	7.4e-189
