The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	745711	753531	2857169		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|745711_746767_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|746766_747453_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|747427_747901_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|748242_748683_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|748962_749547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|749645_750359_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|750362_750782_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|750783_751452_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|751802_752396_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217800.1|752379_753531_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	6.0e-23
>prophage 2
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	765512	780022	2857169		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
WP_000663039.1|765512_766571_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.4e-21
WP_000197262.1|766729_767272_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_138269778.1|767261_767474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429011.1|767879_768797_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	6.2e-07
WP_031760357.1|768889_768991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|769068_770574_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_071665613.1|770635_770884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|770913_771414_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|771433_772300_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|772684_772951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|773100_773499_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855509.1|773461_775567_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|775684_776656_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|777155_777311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876317.1|777349_778321_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.6e-138
WP_001245572.1|778307_779264_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616873.1|779260_780022_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	860589	929139	2857169	head,terminase,capsid,integrase,holin,tail,portal,plate,coat	Staphylococcus_phage(75.0%)	97	870753:870769	902907:902923
WP_000571213.1|860589_861615_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520233.1|861607_862303_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732334.1|862320_863142_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266157.1|863284_864505_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733774.1|864592_865321_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	5.5e-22
WP_001033318.1|865344_866073_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	1.0e-28
WP_001228759.1|866142_866574_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|866590_867049_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|867060_867393_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|867585_867849_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|867841_868114_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|868125_868272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|868264_868474_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|868476_868797_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|868860_869730_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390454.1|869746_871216_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	99.0	2.9e-288
870753:870769	attL	TAGATAAAGAAGCGAGT	NA	NA	NA	NA
WP_001039168.1|871501_871864_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|871865_872150_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|872146_872788_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|873304_873646_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|873657_874236_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|874253_874472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|874522_875050_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_045181470.1|875181_875394_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_001293067.1|875390_875960_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|876267_877068_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|877145_877703_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|878076_878229_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139423.1|878299_878410_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|878396_878597_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|879720_879915_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183851.1|880148_881000_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|881328_882090_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205572.1|882187_883495_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000807678.1|883609_884851_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_001010508.1|884840_885305_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|885455_886853_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145726.1|886920_887970_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_000337826.1|888082_888262_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_072472622.1|888241_889174_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	99.7	3.3e-173
WP_000661437.1|889205_889931_-	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|889958_890633_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|890649_890982_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|891244_891439_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_149569682.1|891438_892203_+	phage antirepressor Ant	NA	R4IFK0	Staphylococcus_phage	99.2	1.4e-140
WP_001148854.1|892219_892414_+	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	90.5	4.6e-21
WP_000939503.1|892444_892588_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	91.3	1.8e-14
WP_000388992.1|892608_893166_-	hypothetical protein	NA	A0A2H4IYS4	uncultured_Caudovirales_phage	54.5	1.7e-47
WP_000977380.1|893236_893458_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	97.3	9.6e-31
WP_000048126.1|893450_893612_+	DUF1270 family protein	NA	A0A2H4PQQ1	Staphylococcus_phage	100.0	3.3e-20
WP_000291089.1|893703_893964_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_001004336.1|893976_894513_+	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_000840496.1|894513_895164_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099007.1|895160_895604_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_031769015.1|895615_896290_+	phi PV83 orf 19-like protein	NA	Q4ZD97	Staphylococcus_virus	97.3	8.4e-126
WP_000371250.1|896395_897253_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_031769013.1|897317_898088_+	replication protein	NA	A0A2H4PQI2	Staphylococcus_phage	99.6	9.0e-116
WP_031769012.1|898097_898871_+	ATP-binding protein	NA	D2JGK5	Staphylococcus_phage	98.4	1.6e-141
WP_001123673.1|899038_899260_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_000049784.1|899270_899675_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001187242.1|899679_899865_+	DUF3113 family protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
WP_001140289.1|899865_900237_+	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	95.9	4.0e-53
WP_001126846.1|900237_900486_+	hypothetical protein	NA	S4V683	Staphylococcus_phage	97.6	8.8e-41
WP_001065064.1|900500_900752_+	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	98.8	1.9e-38
WP_149569683.1|901091_901619_+	dUTPase	NA	B2ZYX2	Staphylococcus_phage	95.4	3.1e-91
WP_029625633.1|901655_901862_+	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	85.3	1.9e-25
WP_149569684.1|901858_902032_+	transcriptional regulator	NA	A1KX88	Staphylococcus_virus	98.2	6.4e-22
WP_000286968.1|902032_902434_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_029647107.1|902363_902618_-	hypothetical protein	NA	Q4ZB48	Staphylococcus_virus	83.3	1.3e-23
WP_000594088.1|902788_903283_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
902907:902923	attR	TAGATAAAGAAGCGAGT	NA	NA	NA	NA
WP_001037578.1|903275_904499_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_053507576.1|904495_905920_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	1.8e-271
WP_000184133.1|905888_906842_+	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
WP_000346033.1|906843_907050_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_001019219.1|907152_907737_+	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000235168.1|907753_908668_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000177351.1|908828_909179_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|909190_909526_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000270192.1|909939_910365_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|910365_910923_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|910989_911496_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|911540_911825_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_000379451.1|911828_914714_+|terminase	terminase	terminase	A1KXA6	Staphylococcus_virus	99.9	0.0e+00
WP_000560181.1|914728_915670_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_001122001.1|915680_917567_+	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_117434812.1|917579_919478_+	hypothetical protein	NA	Q4ZBX7	Staphylococcus_virus	99.5	0.0e+00
WP_029052110.1|919477_921301_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.8	0.0e+00
WP_000705921.1|921300_921678_+	DUF2977 domain-containing protein	NA	Q4ZBX4	Staphylococcus_virus	100.0	1.6e-54
WP_001790193.1|921681_921855_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|921895_922195_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_149569685.1|922331_924206_+	CHAP domain-containing protein	NA	A0A2H4JB48	uncultured_Caudovirales_phage	99.2	0.0e+00
WP_072464654.1|924218_925391_+|plate	BppU family phage baseplate upper protein	plate	Q4ZDT3	Staphylococcus_virus	99.5	2.4e-197
WP_017804641.1|925395_925791_+	hypothetical protein	NA	A0A0E3XBL9	Staphylococcus_phage	97.7	1.3e-65
WP_000354132.1|925846_926284_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_149569686.1|926264_927710_+	CHAP domain-containing protein	NA	A0A0H3U310	Staphylococcus_phage	99.2	2.6e-294
WP_000448197.1|928099_928687_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_000971220.1|928683_929139_+	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
>prophage 4
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1012949	1056667	2857169	tRNA,transposase,bacteriocin,holin,protease	Streptococcus_phage(33.33%)	39	NA	NA
WP_000277723.1|1012949_1014596_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	1.6e-292
WP_000448937.1|1014621_1015611_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1015905_1016301_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|1016671_1017391_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959296.1|1017511_1018498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000082725.1|1018545_1020354_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|1020813_1021620_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|1021642_1022008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|1022111_1022705_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|1022890_1023238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1023254_1023890_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1023906_1024716_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669925.1|1024712_1025567_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1025587_1026973_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395162.1|1026982_1028827_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|1029105_1029876_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1030072_1031158_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570701.1|1031499_1033068_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889183.1|1033210_1033969_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060547.1|1034134_1034860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355328.1|1034861_1035713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|1036447_1036957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001824107.1|1037069_1038278_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1038237_1039413_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|1039845_1041330_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|1041310_1041571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049958.1|1041570_1043133_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.2e-35
WP_000928413.1|1043434_1044238_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_078064575.1|1044453_1046778_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1046794_1048153_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414178.1|1048291_1049803_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1050291_1050861_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1051070_1051289_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1051369_1052356_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1052554_1052731_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1052745_1053348_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_057504515.1|1053743_1055390_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	99.6	9.7e-293
WP_099112139.1|1055673_1055751_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_029656376.1|1056400_1056667_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1090881	1099354	2857169		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1090881_1091364_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010401.1|1091350_1092475_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174047.1|1092478_1093183_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	1.4e-46
WP_000848350.1|1093182_1093446_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1093447_1094119_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032747.1|1094111_1096301_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483727.1|1096279_1097764_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	1.6e-44
WP_000030810.1|1097756_1098785_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238670.1|1098787_1099354_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1357297	1362247	2857169		Staphylococcus_phage(100.0%)	9	NA	NA
WP_001659797.1|1357297_1357495_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078065144.1|1358184_1358409_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002343.1|1358704_1358911_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001788716.1|1359606_1359717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1360145_1360331_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477491.1|1360842_1360947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1361073_1361325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813273.1|1361798_1362053_+	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	62.7	1.4e-25
WP_000780597.1|1362052_1362247_+	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	2.8e-18
>prophage 7
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1536286	1618271	2857169	head,terminase,capsid,tRNA,integrase,holin,tail,protease,portal	Staphylococcus_phage(85.0%)	106	1596104:1596118	1614087:1614101
WP_000858801.1|1536286_1537579_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525064.1|1537900_1540594_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.6	1.1e-46
WP_000049916.1|1540617_1541589_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361537.1|1541575_1542778_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	5.4e-35
WP_000690024.1|1542782_1543925_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1544182_1544500_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1544835_1545516_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154692.1|1545587_1546175_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005216.1|1546164_1546740_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389518.1|1546753_1547998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245912.1|1548004_1549303_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776330.1|1549312_1550377_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269940.1|1550402_1551569_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789522.1|1551955_1552156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442477.1|1552365_1552815_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_078062714.1|1552906_1553851_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1553867_1554593_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1554595_1555168_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1555598_1555871_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161742.1|1556041_1557040_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1557056_1558367_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133960.1|1558583_1559759_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844924.1|1560014_1560206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031844926.1|1560322_1560427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644394.1|1560469_1561129_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681761.1|1561205_1562174_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1562288_1563275_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001824277.1|1563435_1563552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069308.1|1563676_1565137_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902114.1|1565289_1566669_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.2e-56
WP_001163813.1|1566658_1567612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1567719_1567968_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186908.1|1568073_1568619_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476869.1|1569021_1569966_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476889.1|1570023_1570929_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061820357.1|1571019_1571271_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	96.7	2.0e-24
WP_024937002.1|1571453_1572437_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239544.1|1572432_1573371_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909204.1|1573760_1575215_-	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	100.0	7.5e-289
WP_000339141.1|1575225_1575528_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000340977.1|1575653_1576028_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1576083_1576371_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1576417_1576570_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582126.1|1576559_1580345_-	hypothetical protein	NA	G4KNR1	Staphylococcus_phage	100.0	0.0e+00
WP_000567420.1|1580360_1581845_-|tail	phage tail protein	tail	G4KNR0	Staphylococcus_phage	100.0	1.6e-299
WP_000504558.1|1581844_1586386_-|tail	phage tail tape measure protein	tail	A0A2I6PE03	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1586630_1586981_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1587030_1587255_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268740.1|1587296_1587941_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|1587941_1588349_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1588345_1588750_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1588746_1589109_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1589092_1589377_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1589366_1589651_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1589670_1590816_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1590839_1591577_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025272.1|1591560_1592748_-|portal	phage portal protein	portal	G4KNQ1	Staphylococcus_phage	100.0	4.6e-220
WP_000625097.1|1592763_1594425_-|terminase	terminase large subunit	terminase	G4KNQ0	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1594421_1594766_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1594896_1595196_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1595427_1595844_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1595871_1596072_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_001005262.1|1596071_1596722_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
1596104:1596118	attL	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_000501856.1|1596880_1597045_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	100.0	3.9e-21
WP_001125015.1|1597032_1597233_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1597207_1597396_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001282074.1|1597392_1597638_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061834.1|1597674_1598181_-	hypothetical protein	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_000454994.1|1598357_1598639_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_001065099.1|1598802_1599054_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	100.0	6.4e-39
WP_000131388.1|1599068_1599311_-	hypothetical protein	NA	A0A2I6PDU1	Staphylococcus_phage	100.0	3.9e-41
WP_000029366.1|1599314_1599671_-	hypothetical protein	NA	G4KNP3	Staphylococcus_phage	100.0	1.1e-60
WP_001187236.1|1599671_1599857_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_000049798.1|1599861_1600266_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123669.1|1600275_1600497_-	DUF3269 family protein	NA	A0A2I6PDV8	Staphylococcus_phage	100.0	1.7e-35
WP_000256594.1|1600509_1600668_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_000803062.1|1600661_1601441_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190254.1|1601450_1602221_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1602286_1602568_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000057262.1|1602706_1603381_-	hypothetical protein	NA	G4KNN9	Staphylococcus_phage	100.0	8.6e-131
WP_001099007.1|1603392_1603836_-	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	100.0	1.4e-76
WP_000840496.1|1603832_1604483_-	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|1604483_1605020_-	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001556704.1|1605032_1605293_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000829610.1|1605297_1605615_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_001285954.1|1605703_1605865_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124198.1|1605876_1606140_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001037095.1|1606169_1606388_-	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_001025595.1|1606384_1606711_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_000435343.1|1606944_1607205_-	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001148617.1|1607217_1607970_-	oxidoreductase	NA	G4KNN1	Staphylococcus_phage	100.0	1.1e-139
WP_000801108.1|1608030_1608258_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000502678.1|1608259_1608451_-	hypothetical protein	NA	A0A2I6PDT1	Staphylococcus_phage	100.0	9.5e-27
WP_000772137.1|1608507_1608717_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|1608709_1608850_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435346.1|1608864_1609308_-	hypothetical protein	NA	G4KNN0	Staphylococcus_phage	100.0	2.0e-75
WP_000548578.1|1609320_1609560_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|1609730_1610438_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001089804.1|1610591_1610777_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1610976_1611159_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1611194_1611341_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191466.1|1611337_1611952_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1612077_1613283_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001838630.1|1613325_1615353_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	92.5	3.3e-109
1614087:1614101	attR	TAATTCTTTCTTTTA	NA	NA	NA	NA
WP_001824281.1|1615364_1616273_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987767.1|1616519_1618271_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	2.6e-22
>prophage 8
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1674099	1682411	2857169	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1674099_1674885_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924210.1|1675010_1675901_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	3.4e-26
WP_001062177.1|1675910_1677257_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683914.1|1677370_1678471_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624567.1|1678473_1679151_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1679281_1680388_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217251.1|1680611_1682411_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 9
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1753055	1762098	2857169	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1753055_1753574_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594983.1|1753595_1755869_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	2.1e-64
WP_000749798.1|1756071_1758351_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1758625_1758886_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1758904_1760044_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019166.1|1760066_1761092_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1761093_1762098_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1888077	1934005	2857169	tRNA,protease	Staphylococcus_phage(94.29%)	44	NA	NA
WP_001050576.1|1888077_1894635_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	93.2	1.2e-290
WP_000836467.1|1894960_1895272_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	98.1	5.3e-51
WP_001108730.1|1895293_1897708_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025062.1|1897999_1899181_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.5	1.2e-217
WP_000526539.1|1899290_1900244_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_149569697.1|1900240_1900804_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.6e-101
WP_000757543.1|1900923_1901325_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266100.1|1901897_1902725_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1902727_1902847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071665630.1|1902858_1903050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196343.1|1902958_1903960_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	1.7e-183
WP_001008551.1|1904081_1904546_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159028.1|1904558_1905740_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493883.1|1905750_1906383_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	2.4e-111
WP_000384177.1|1906389_1907421_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.5	9.0e-196
WP_001261664.1|1907913_1909416_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221186.1|1909937_1910252_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	95.2	1.4e-51
WP_000989100.1|1910251_1911544_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.4	2.2e-223
WP_000163239.1|1911561_1911954_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	6.9e-72
WP_001032836.1|1912358_1913213_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.1	4.9e-38
WP_000384172.1|1913488_1913713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153740.1|1914490_1914934_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030460.1|1914920_1915364_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	5.4e-57
WP_025175276.1|1915661_1916297_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_000492902.1|1916463_1917084_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096492.1|1917552_1918266_-	transaldolase	NA	M1PR54	Cyanophage	34.5	1.2e-18
WP_000091445.1|1918523_1918826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1919081_1919447_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|1919443_1919797_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453310.1|1920046_1920880_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	1.3e-157
WP_000366163.1|1921091_1922000_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1922124_1923318_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_149569698.1|1923689_1925282_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_078065176.1|1925575_1926322_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672009.1|1926326_1926800_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718107.1|1926865_1927123_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778518.1|1927119_1928121_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	4.8e-186
WP_000348385.1|1928125_1929604_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.5	1.0e-280
WP_078065177.1|1929763_1930219_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	4.0e-79
WP_001838615.1|1930521_1931172_+	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.5	4.7e-33
WP_000070638.1|1931252_1932248_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	92.7	1.7e-66
WP_000669039.1|1932323_1932950_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.6	5.8e-81
WP_000627534.1|1932990_1933332_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	2.8e-53
WP_000414219.1|1933432_1934005_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
>prophage 11
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	1939559	1947871	2857169	transposase	Staphylococcus_phage(72.73%)	11	NA	NA
WP_001044434.1|1939559_1940414_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	6.4e-06
WP_049280116.1|1940664_1941210_-	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	1.8e-09
WP_000669789.1|1941626_1941806_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001795394.1|1941829_1942138_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_001791826.1|1942116_1942377_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1942428_1942779_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1943461_1943911_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1944005_1944464_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_001066124.1|1944642_1945404_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.2	1.1e-54
WP_000777467.1|1945396_1946689_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	30.8	2.6e-14
WP_000206347.1|1947082_1947871_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	7.0e-140
>prophage 12
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	2083493	2096038	2857169	integrase,terminase,coat	Staphylococcus_phage(61.11%)	20	2078417:2078436	2094060:2094079
2078417:2078436	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_001293084.1|2083493_2084063_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	8.7e-100
WP_078065371.1|2084059_2084272_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	94.3	5.4e-31
WP_000771371.1|2084403_2084931_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	1.4e-88
WP_029625649.1|2084983_2085637_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.1	1.7e-115
WP_001190614.1|2085667_2086009_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_001019280.1|2086544_2087186_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	8.5e-112
WP_001003076.1|2087187_2087451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059599.1|2087452_2087809_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
WP_000151864.1|2088051_2089422_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
WP_001002722.1|2089433_2090303_-	hypothetical protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	75.8	2.2e-131
WP_001103965.1|2090367_2090694_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	98.1	1.8e-54
WP_000403839.1|2090694_2091078_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231376.1|2091079_2091283_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_048667709.1|2091267_2091423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2091419_2091737_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2091741_2091960_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2092132_2092807_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_048667711.1|2092820_2093993_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	7.8e-220
WP_000240638.1|2094061_2095678_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
2094060:2094079	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2095753_2096038_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 13
NZ_CP039448	Staphylococcus aureus strain VGC1 chromosome, complete genome	2857169	2695981	2732518	2857169	holin,transposase,protease	Streptococcus_phage(45.0%)	36	NA	NA
WP_002354485.1|2695981_2696668_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001240982.1|2697066_2699985_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|2699988_2700543_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_000085855.1|2700761_2700893_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	90.7	8.2e-14
WP_001038790.1|2700897_2701635_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001814874.1|2701759_2701843_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001096887.1|2702384_2703179_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001255866.1|2703748_2704657_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|2704689_2705424_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000233000.1|2705404_2706274_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.7	6.7e-152
WP_000205227.1|2706288_2706513_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002390960.1|2706655_2708200_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	88.7	1.8e-256
WP_000323438.1|2708219_2708636_-	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	98.6	1.2e-71
WP_002360685.1|2708636_2708933_-	hypothetical protein	NA	A0A2K5B2B2	Erysipelothrix_phage	91.8	4.6e-44
WP_000898188.1|2708966_2709134_-	hypothetical protein	NA	A0A2K5B2B2	Erysipelothrix_phage	92.7	2.6e-20
WP_001062586.1|2710137_2710740_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	38.3	5.7e-17
WP_002354485.1|2711240_2711927_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_096827997.1|2712667_2713354_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	8.5e-126
WP_014363485.1|2713401_2713749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000161217.1|2713764_2714841_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_014532712.1|2715183_2715555_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_000163745.1|2715568_2716420_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_000860047.1|2716412_2717231_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
WP_000953560.1|2717303_2718164_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000186117.1|2718249_2718954_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000846637.1|2719231_2720191_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_000534436.1|2720877_2722326_+	amino acid permease	NA	NA	NA	NA	NA
WP_000030049.1|2722405_2723743_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.8e-18
WP_001237630.1|2723996_2724413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031407.1|2724535_2725426_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001130051.1|2725620_2727117_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_025174545.1|2727412_2727742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001172340.1|2727801_2729400_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_001028780.1|2729593_2730037_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000011688.1|2730316_2730529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000066521.1|2730808_2732518_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
