The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	0	3401	2090133		Chrysochromulina_ericina_virus(100.0%)	2	NA	NA
WP_005705451.1|261_1335_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_005705458.1|2033_3401_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	36.9	1.4e-34
>prophage 2
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	7156	11201	2090133		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_005705490.1|7156_8209_+	rod shape-determining protein	NA	F2Y2E1	Organic_Lake_phycodnavirus	23.6	3.9e-05
WP_005705583.1|8299_9364_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_005705445.1|9363_9852_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_005705457.1|9863_11201_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	41.0	2.1e-80
>prophage 3
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	19232	34192	2090133	tRNA	Cedratvirus(16.67%)	11	NA	NA
WP_005705545.1|19232_20030_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	25.1	6.4e-08
WP_005705449.1|20116_22039_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.8	4.9e-94
WP_005705512.1|22164_22527_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005705534.1|22535_23222_+	LrgB family protein	NA	NA	NA	NA	NA
WP_039862956.1|23251_23956_-	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
WP_005705485.1|24055_24730_+	GTP cyclohydrolase I FolE	NA	Q6WI31	Vibrio_phage	50.0	3.8e-54
WP_005705587.1|24736_25522_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_005705542.1|25592_25877_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_005705577.1|26047_26992_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	NA	A0A1W6JP29	Morganella_phage	43.3	3.6e-58
WP_005705569.1|27023_29630_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.2	2.5e-24
WP_005705508.1|29674_34192_+	autotransporter domain-containing protein	NA	Q9LA58	Enterobacterial_phage	39.0	1.2e-90
>prophage 4
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	39435	41627	2090133		Bacillus_phage(100.0%)	2	NA	NA
WP_005705562.1|39435_40839_-	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	24.3	5.1e-16
WP_005705589.1|40892_41627_-	response regulator	NA	W8CYM9	Bacillus_phage	36.9	3.0e-28
>prophage 5
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	57960	62243	2090133		Mycobacterium_phage(50.0%)	2	NA	NA
WP_005705510.1|57960_60936_+	DNA translocase FtsK	NA	G1FGP1	Mycobacterium_phage	44.4	1.9e-76
WP_005705571.1|61160_62243_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A2I6UFP9	Klebsiella_phage	47.6	1.7e-80
>prophage 6
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	66503	68809	2090133	protease	Pseudomonas_phage(50.0%)	3	NA	NA
WP_005705515.1|66503_66920_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	43.4	2.9e-20
WP_005705455.1|66967_67621_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005705524.1|68005_68809_+	WYL domain-containing protein	NA	A0A0R6PH67	Moraxella_phage	28.0	5.6e-28
>prophage 7
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	74623	83969	2090133	tRNA	Tupanvirus(16.67%)	8	NA	NA
WP_005705521.1|74623_75607_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	37.4	5.4e-33
WP_005705473.1|75781_78169_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	25.5	8.1e-06
WP_005705559.1|78187_78481_+	integration host factor subunit alpha	NA	A3E2K9	Sodalis_phage	44.9	1.0e-11
WP_039862970.1|78536_79052_+	endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	42.2	1.4e-16
WP_005705531.1|79318_79768_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_005705503.1|79787_81074_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
WP_005705584.1|81157_81700_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.7	1.8e-14
WP_005705453.1|81791_83969_+	transglycosylase SLT domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	36.8	3.8e-10
>prophage 8
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	89803	89986	2090133		Vibrio_virus(100.0%)	1	NA	NA
WP_039862950.1|89803_89986_+	hypothetical protein	NA	Q9MBU8	Vibrio_virus	51.7	8.5e-09
>prophage 9
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	97149	194812	2090133	tRNA,integrase,tail,portal,terminase,protease,head,capsid	Haemophilus_virus(30.56%)	100	150649:150668	195697:195716
WP_005705546.1|97149_98067_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_005705552.1|98069_98450_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_005705530.1|101001_104295_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_039862943.1|104434_107350_-	site-specific DNA-methyltransferase	NA	A0A220NUF4	Escherichia_phage	25.8	4.7e-24
WP_005705514.1|107592_110145_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.1	1.2e-26
WP_005705551.1|110166_111663_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_005705444.1|111693_112155_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_005705522.1|112672_114343_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	78.1	4.3e-256
WP_005705585.1|114553_114898_-	membrane protein	NA	NA	NA	NA	NA
WP_005705477.1|115129_116206_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_005705567.1|116416_117208_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	4.0e-26
WP_005705488.1|117233_118409_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005705486.1|118420_119164_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_100208011.1|119235_120063_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005705511.1|120062_120947_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005705484.1|120950_121733_-	metal ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_005705588.1|121751_122633_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005705578.1|122784_123921_-	methionine biosynthesis PLP-dependent protein	NA	A0A1V0SL56	Klosneuvirus	25.0	2.9e-14
WP_005705564.1|124095_124905_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_005705464.1|125010_126096_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_005705502.1|126095_126494_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_005705572.1|126793_127831_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_005705570.1|127898_128375_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_005705581.1|128384_128630_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
WP_005705529.1|128631_129087_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
WP_005705469.1|129544_129760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705518.1|130057_131659_-	hypothetical protein	NA	Q94MX6	Haemophilus_virus	51.5	7.7e-154
WP_005705491.1|131660_132281_-	hypothetical protein	NA	Q94MX7	Haemophilus_virus	63.8	2.1e-38
WP_147286455.1|132261_132990_-	hypothetical protein	NA	Q94MX8	Haemophilus_virus	38.4	6.4e-39
WP_005705566.1|133021_133870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705446.1|133875_134184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705537.1|134143_134491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705573.1|134499_134868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705568.1|134870_136160_-|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	32.5	3.0e-31
WP_039862963.1|136168_136690_-|tail	phage tail protein	tail	Q1I0Y4	Pasteurella_virus	54.3	6.4e-49
WP_005705520.1|136697_137867_-	hypothetical protein	NA	Q94MY2	Haemophilus_virus	61.6	6.9e-136
WP_005706335.1|137909_138254_-	DUF2590 family protein	NA	Q1I0Y6	Pasteurella_virus	57.0	3.0e-23
WP_005706268.1|138257_140315_-|tail	phage tail tape measure protein	tail	Q1I0Y7	Pasteurella_virus	34.8	1.0e-81
WP_005706323.1|140559_140874_-	hypothetical protein	NA	Q775G2	Haemophilus_virus	38.5	4.4e-13
WP_005706344.1|140972_141287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706328.1|141290_141755_-	lysozyme	NA	A0A0M5M782	Salmonella_phage	47.1	7.7e-30
WP_005706285.1|141766_142219_-	DUF2597 family protein	NA	Q94MY8	Haemophilus_virus	56.0	9.5e-41
WP_005706287.1|142228_143365_-	DUF2586 family protein	NA	Q94MY9	Haemophilus_virus	52.4	1.5e-103
WP_039863189.1|143411_143801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039863187.1|143793_144174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706294.1|144170_144698_-|tail	phage tail completion protein R	tail	Q1I0Z6	Pasteurella_virus	33.5	2.1e-23
WP_005706289.1|144712_145180_-|head	head completion/stabilization protein	head	Q1I0Z7	Pasteurella_virus	49.0	1.7e-32
WP_005706308.1|145172_146054_-|terminase	phage small terminase subunit	terminase	Q94MZ3	Haemophilus_virus	38.5	3.2e-40
WP_005706313.1|146061_147063_-|capsid	phage major capsid protein, P2 family	capsid	Q94MZ4	Haemophilus_virus	57.8	7.1e-105
WP_039863202.1|147072_147972_-|capsid	capsid scaffolding protein	capsid	R9TRS3	Vibrio_phage	48.3	1.6e-31
WP_005706296.1|148154_149963_+|terminase	terminase	terminase	Q1I101	Pasteurella_virus	66.0	1.2e-232
WP_100208021.1|150043_151015_+|portal	phage portal protein	portal	Q94MZ7	Haemophilus_virus	64.4	9.6e-115
150649:150668	attL	GGAAGAACAAATCCGTGAAT	NA	NA	NA	NA
WP_005706325.1|151084_151372_+	phage transcriptional activator, Ogr/Delta	NA	NA	NA	NA	NA
WP_005706302.1|151661_151844_+	hypothetical protein	NA	Q19US2	Mannheimia_phage	69.5	7.9e-15
WP_039863182.1|152076_152262_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_005706311.1|152292_152721_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_115364335.1|152746_152818_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_005706322.1|152844_153255_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	56.0	4.9e-36
WP_005706351.1|153312_153534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039863201.1|153544_154069_-	phage N-6-adenine-methyltransferase	NA	Q1I104	Pasteurella_virus	51.9	4.9e-41
WP_005706317.1|154085_156629_-	replication endonuclease	NA	Q1I108	Pasteurella_virus	44.0	1.0e-147
WP_005706295.1|156661_156895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706342.1|156904_157156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706341.1|157158_157323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706334.1|157300_157609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706349.1|157618_157864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114987824.1|158017_158182_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005706330.1|158313_158511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706303.1|158571_158841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706283.1|158800_159013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039863180.1|159122_159353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050855314.1|159441_159840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706274.1|159875_160445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706271.1|160571_160751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706327.1|160701_161481_+	hypothetical protein	NA	A0A0R6PIN1	Moraxella_phage	29.0	5.8e-22
WP_039863178.1|161684_161897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706291.1|161889_162282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706263.1|162300_162498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706307.1|162478_163489_+|integrase	tyrosine-type recombinase/integrase	integrase	Q1I119	Pasteurella_virus	50.3	2.2e-90
WP_005706276.1|163904_164723_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_039863196.1|164722_165325_-	DNA glycosylase	NA	NA	NA	NA	NA
WP_005706284.1|165516_167949_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	A0A172JHT4	Bacillus_phage	32.0	1.1e-98
WP_039863176.1|167998_170041_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	48.3	1.5e-138
WP_005706265.1|170121_171030_-	cell division protein ZipA	NA	NA	NA	NA	NA
WP_005706272.1|171135_171951_+	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_005706305.1|172004_172196_-	ribosome alternative rescue factor ArfA	NA	NA	NA	NA	NA
WP_005706314.1|172340_174941_-	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	36.4	1.0e-91
WP_005706281.1|175135_176218_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	46.8	3.8e-88
WP_100208020.1|176250_179529_-	mechanosensitive channel MscK	NA	NA	NA	NA	NA
WP_005706267.1|179557_182878_-	mechanosensitive channel MscK	NA	NA	NA	NA	NA
WP_005706298.1|182874_184329_-	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA	NA
WP_005706304.1|184335_184899_-	replication initiation negative regulator SeqA	NA	NA	NA	NA	NA
WP_005706336.1|185013_185802_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_005706350.1|185816_186539_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA	NA
WP_005706306.1|186590_187442_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_005706354.1|187547_188264_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_005706293.1|188524_190303_-	ABC transporter ATP-binding protein/permease	NA	NA	NA	NA	NA
WP_005706348.1|190471_192400_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0CDP4	Ostreococcus_lucimarinus_virus	42.9	9.4e-114
WP_005706332.1|192447_193074_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_005706338.1|193345_194812_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.6	5.2e-96
195697:195716	attR	GGAAGAACAAATCCGTGAAT	NA	NA	NA	NA
>prophage 10
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	199136	200513	2090133		Cellulophaga_phage(100.0%)	1	NA	NA
WP_039863172.1|199136_200513_+	relaxase/mobilization nuclease domain-containing protein	NA	M1Q738	Cellulophaga_phage	39.7	6.4e-48
>prophage 11
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	203710	209121	2090133	integrase	Staphylococcus_phage(50.0%)	4	199695:199708	212151:212164
199695:199708	attL	CATATTTCATCTCG	NA	NA	NA	NA
WP_005706266.1|203710_204898_-	type I restriction modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	25.4	3.3e-24
WP_143413714.1|206820_207111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863168.1|207224_207428_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_005706280.1|207429_209121_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M2A8	Enterobacteria_phage	31.9	7.7e-35
212151:212164	attR	CATATTTCATCTCG	NA	NA	NA	NA
>prophage 12
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	213375	216731	2090133		Enterobacteria_phage(50.0%)	3	NA	NA
WP_005706064.1|213375_214386_+	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	33.0	1.7e-34
WP_005706083.1|214395_214992_+	DedA family protein	NA	NA	NA	NA	NA
WP_005706076.1|215063_216731_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	26.0	4.6e-24
>prophage 13
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	222838	229666	2090133		Heterosigma_akashiwo_virus(33.33%)	6	NA	NA
WP_005706065.1|222838_223507_-	ribonuclease III	NA	A0A1C9C5A7	Heterosigma_akashiwo_virus	37.0	3.8e-22
WP_005706073.1|223588_224467_-	signal peptidase I	NA	NA	NA	NA	NA
WP_039863121.1|224557_226351_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	42.6	6.5e-24
WP_005706077.1|226454_227009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706070.1|227008_227782_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_078208078.1|227863_229666_-	acyltransferase	NA	B5WZU0	Pseudomonas_phage	27.5	7.6e-41
>prophage 14
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	242974	244399	2090133		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_005705329.1|242974_244399_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	2.2e-43
>prophage 15
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	250577	251528	2090133		Tupanvirus(100.0%)	1	NA	NA
WP_005705297.1|250577_251528_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	37.8	1.2e-42
>prophage 16
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	261927	265937	2090133	tRNA	Pandoravirus(33.33%)	5	NA	NA
WP_005705253.1|261927_262689_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	27.4	1.8e-12
WP_005705293.1|262764_263820_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.0	1.6e-22
WP_005705322.1|263882_264179_+	RnfH family protein	NA	NA	NA	NA	NA
WP_005705341.1|264281_265235_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_005705312.1|265241_265937_+	glycosyltransferase family 25 protein	NA	A0A1V0SF51	Hokovirus	34.4	2.1e-07
>prophage 17
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	279638	280784	2090133		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005705337.1|279638_280784_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.4	6.8e-128
>prophage 18
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	284436	286233	2090133		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_005705344.1|284436_284946_+	peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	39.1	1.3e-14
WP_005705255.1|284982_286233_+	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	50.9	2.2e-95
>prophage 19
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	295171	300607	2090133	tRNA	Yellowstone_lake_phycodnavirus(50.0%)	5	NA	NA
WP_005705291.1|295171_296893_-	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.3	3.1e-60
WP_005705287.1|297160_297598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705304.1|297797_298544_-	carbonate dehydratase	NA	NA	NA	NA	NA
WP_005705324.1|298565_299141_-	DUF1439 domain-containing protein	NA	NA	NA	NA	NA
WP_005705276.1|299458_300607_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	47.0	5.7e-90
>prophage 20
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	304824	331964	2090133	tRNA	uncultured_Caudovirales_phage(13.33%)	29	NA	NA
WP_005705307.1|304824_305565_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	25.3	7.5e-19
WP_005705254.1|305724_306810_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	44.1	2.0e-81
WP_005705265.1|306932_307574_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_005705320.1|307661_308504_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_005705289.1|308556_309120_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A223VZK2	Agrobacterium_phage	26.0	4.8e-10
WP_005705261.1|309132_309546_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_005705257.1|309855_310338_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_005705250.1|310648_311530_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_005705268.1|311609_312239_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A218M2Y8	Acidovorax_phage	34.4	6.4e-11
WP_005705332.1|312252_312696_-	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	40.6	3.1e-20
WP_005705295.1|312688_313363_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	48.6	1.0e-51
WP_005705305.1|313487_313874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705310.1|313916_314474_-	molecular chaperone	NA	NA	NA	NA	NA
WP_005705271.1|314563_315409_+	deoxyribonuclease IV	NA	A0A1V0SFR4	Hokovirus	30.5	9.1e-29
WP_005705303.1|315512_316094_+	hypothetical protein	NA	S5MM68	Bacillus_phage	39.7	9.7e-14
WP_005705284.1|316224_317505_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_005705328.1|317507_317993_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	39.5	3.5e-25
WP_005705339.1|317995_318544_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.6	4.5e-29
WP_005706655.1|318801_319302_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_005706727.1|319332_320448_+	LysM peptidoglycan-binding domain-containing protein	NA	M1HNA7	Bacillus_virus	26.6	1.2e-15
WP_005706698.1|320584_321805_+	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.9	2.0e-40
WP_005706724.1|321806_322238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706707.1|322256_323747_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	46.1	8.7e-83
WP_005706688.1|323871_324678_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005706681.1|324664_324973_-	trp operon repressor	NA	NA	NA	NA	NA
WP_005706692.1|325042_325669_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_005706697.1|325760_328613_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	33.8	5.4e-81
WP_005706683.1|328746_329892_-	type IV pili	NA	NA	NA	NA	NA
WP_005706686.1|329903_331964_-	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	33.8	2.0e-85
>prophage 21
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	336393	344000	2090133		Cyanophage(20.0%)	8	NA	NA
WP_005706664.1|336393_337428_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SCX2	Cyanophage	43.6	1.6e-72
WP_005706731.1|337482_338121_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.1	1.4e-29
WP_005706667.1|338280_339189_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005706678.1|339188_340139_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	38.3	2.1e-58
WP_005706660.1|340135_341077_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_005706690.1|341073_341832_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	28.4	1.1e-14
WP_005706657.1|342043_342724_+	TIGR00153 family protein	NA	NA	NA	NA	NA
WP_005706647.1|342734_344000_+	inorganic phosphate transporter	NA	E5ESL8	Bathycoccus_sp._RCC1105_virus	37.6	2.5e-30
>prophage 22
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	348204	352121	2090133	tRNA	Bacillus_phage(33.33%)	3	NA	NA
WP_005706729.1|348204_349092_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	49.0	3.3e-61
WP_005706740.1|349232_349415_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	57.9	6.3e-12
WP_039863267.1|349496_352121_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.4	3.0e-78
>prophage 23
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	361733	366596	2090133		Bacillus_phage(33.33%)	4	NA	NA
WP_005706703.1|361733_363449_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.9	3.6e-72
WP_005706722.1|363452_364166_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_005706702.1|364184_365573_-	murein DD-endopeptidase MepM	NA	H9A126	Staphylococcus_phage	35.9	3.5e-17
WP_005706701.1|365783_366596_+	zinc ABC transporter ATP-binding protein ZnuC	NA	A0A2K9L3Z8	Tupanvirus	37.0	9.1e-18
>prophage 24
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	372606	381234	2090133	tRNA,integrase	Staphylococcus_phage(25.0%)	5	371064:371077	388324:388337
371064:371077	attL	CAAGCGGTCAAATT	NA	NA	NA	NA
WP_005706654.1|372606_375192_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	43.1	9.2e-189
WP_005706694.1|375322_376867_-	exodeoxyribonuclease I	NA	NA	NA	NA	NA
WP_039863274.1|377111_378491_-	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	26.0	4.0e-05
WP_005706696.1|378687_380091_+|tRNA	asparagine--tRNA ligase	tRNA	A0A1V0SDB6	Indivirus	37.7	1.4e-82
WP_078208079.1|380844_381234_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A0R6PH06	Moraxella_phage	47.2	2.8e-17
388324:388337	attR	CAAGCGGTCAAATT	NA	NA	NA	NA
>prophage 25
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	386675	387821	2090133		uncultured_virus(100.0%)	1	NA	NA
WP_005706735.1|386675_387821_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	62.6	7.8e-140
>prophage 26
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	394286	408508	2090133		uncultured_Caudovirales_phage(25.0%)	11	NA	NA
WP_005706658.1|394286_395195_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	6.0e-26
WP_005706651.1|395311_397384_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	38.3	4.8e-47
WP_005706676.1|397401_397941_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	40.5	1.9e-24
WP_005706677.1|398097_398433_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	53.2	3.7e-26
WP_005706734.1|398432_399098_-	BAX inhibitor protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	53.4	3.1e-48
WP_005706714.1|399264_399813_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_005706726.1|399880_403045_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	28.6	2.8e-78
WP_005706723.1|403366_404215_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_005706675.1|404216_405590_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_039863260.1|405582_407268_-	type I restriction-modification system subunit M	NA	A0A2H4UVW8	Bodo_saltans_virus	22.6	7.2e-09
WP_005706652.1|407419_408508_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.7	6.1e-86
>prophage 27
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	414799	424626	2090133		Vibrio_phage(33.33%)	9	NA	NA
WP_005706039.1|414799_416749_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.6	5.5e-69
WP_005706035.1|416971_417559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863108.1|417661_418123_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	55.4	2.2e-45
WP_005706059.1|418198_419530_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	79.4	1.1e-52
WP_005706042.1|419680_420718_+	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
WP_005706054.1|420794_421601_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_005706053.1|421732_422023_+	co-chaperone GroES	NA	A0A221S322	uncultured_virus	36.8	1.1e-10
WP_005706043.1|422044_423691_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	67.9	6.5e-188
WP_005706052.1|423786_424626_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.7	1.0e-40
>prophage 28
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	431762	446890	2090133	transposase	Streptococcus_phage(33.33%)	15	NA	NA
WP_005706037.1|431762_433133_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	46.7	6.9e-111
WP_005706049.1|433276_434467_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_005706044.1|434514_434775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706055.1|434805_435660_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.1	1.2e-47
WP_005706061.1|435693_436563_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005706045.1|436601_437465_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_005706914.1|437609_438602_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
WP_005706235.1|440284_441376_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.1	1.8e-61
WP_005706231.1|441384_442161_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_005706256.1|442160_442796_+	endonuclease III	NA	NA	NA	NA	NA
WP_005706248.1|442927_443146_-	YdcH family protein	NA	NA	NA	NA	NA
WP_005706244.1|443327_444263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706252.1|444347_445166_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	31.8	1.9e-23
WP_005706232.1|445162_446320_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_005706241.1|446305_446890_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	33.5	6.5e-26
>prophage 29
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	457414	459196	2090133		Cronobacter_phage(100.0%)	1	NA	NA
WP_005706233.1|457414_459196_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A060AN10	Cronobacter_phage	57.9	2.2e-205
>prophage 30
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	470319	472167	2090133		Bacillus_phage(100.0%)	1	NA	NA
WP_005706889.1|470319_472167_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.3e-35
>prophage 31
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	477415	485163	2090133		Salmonella_phage(33.33%)	5	NA	NA
WP_005706868.1|477415_478321_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	45.7	2.8e-68
WP_005706875.1|478493_479708_+	amino acid permease	NA	NA	NA	NA	NA
WP_078208088.1|479818_480859_+	selenide, water dikinase SelD	NA	NA	NA	NA	NA
WP_005706806.1|480914_482846_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.4	6.0e-52
WP_005706830.1|483135_485163_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 32
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	499002	505796	2090133		Mollivirus(33.33%)	6	NA	NA
WP_005706905.1|499002_500529_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	41.5	5.6e-85
WP_005706818.1|500606_501848_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_005706808.1|501854_502610_+	molybdopterin-synthase adenylyltransferase MoeB	NA	A0A1V0SIK8	Klosneuvirus	32.5	1.6e-16
WP_050855324.1|502930_503539_-	DUF1919 domain-containing protein	NA	NA	NA	NA	NA
WP_005706778.1|503659_504616_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005706776.1|504845_505796_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	50.0	5.9e-69
>prophage 33
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	511266	515278	2090133		Burkholderia_virus(33.33%)	6	NA	NA
WP_005706777.1|511266_511542_+	HU family DNA-binding protein	NA	A4JWM7	Burkholderia_virus	58.9	9.5e-20
WP_005706867.1|511624_512278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706810.1|512340_513009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706843.1|513125_513983_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	27.6	8.4e-06
WP_005706821.1|513997_514507_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_005706837.1|514552_515278_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.3e-23
>prophage 34
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	522998	524663	2090133		environmental_halophage(100.0%)	1	NA	NA
WP_005706798.1|522998_524663_+	ribonucleoside-diphosphate reductase subunit alpha	NA	Q2XUY0	environmental_halophage	60.1	4.8e-199
>prophage 35
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	534817	537220	2090133		Moraxella_phage(100.0%)	1	NA	NA
WP_005706832.1|534817_537220_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	54.7	5.3e-231
>prophage 36
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	547675	557645	2090133	tRNA	Organic_Lake_phycodnavirus(20.0%)	10	NA	NA
WP_005706853.1|547675_549412_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.6	3.2e-12
WP_005706841.1|549489_549927_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_039863298.1|549937_550570_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_005706860.1|550594_551011_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_005706878.1|551190_552681_+	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	33.6	2.8e-12
WP_005706773.1|552715_553372_+	cell division ATP-binding protein FtsE	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.6	5.6e-18
WP_005706794.1|553387_554323_+	cell division protein FtsX	NA	NA	NA	NA	NA
WP_005706809.1|554390_555194_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	26.7	1.1e-07
WP_005706862.1|555281_556655_-	Na+/H+ antiporter family protein	NA	NA	NA	NA	NA
WP_005706792.1|556706_557645_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	84.7	2.0e-125
>prophage 37
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	561609	563778	2090133		uncultured_virus(100.0%)	1	NA	NA
WP_005706871.1|561609_563778_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.8	7.6e-104
>prophage 38
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	585452	586364	2090133		Burkholderia_virus(100.0%)	1	NA	NA
WP_005706893.1|585452_586364_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	26.9	9.3e-11
>prophage 39
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	594501	597245	2090133	protease	Caulobacter_phage(50.0%)	4	NA	NA
WP_005706852.1|594501_595053_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	30.2	1.5e-19
WP_005706816.1|595094_595688_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_005706795.1|595772_596126_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_005706799.1|596192_597245_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	32.1	1.1e-20
>prophage 40
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	601167	602160	2090133	transposase	Wolbachia_phage(100.0%)	1	NA	NA
WP_005706914.1|601167_602160_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
>prophage 41
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	607596	610059	2090133		Dickeya_phage(100.0%)	1	NA	NA
WP_039863232.1|607596_610059_+	glycogen/starch/alpha-glucan phosphorylase	NA	A0A140XAG6	Dickeya_phage	54.2	5.0e-19
>prophage 42
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	614525	615290	2090133		Phage_NCTB(100.0%)	1	NA	NA
WP_005706511.1|614525_615290_-	glycosyltransferase family 2 protein	NA	A0A1C3NFH8	Phage_NCTB	30.2	8.3e-05
>prophage 43
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	627504	628815	2090133		Streptococcus_phage(100.0%)	1	NA	NA
WP_005706543.1|627504_628815_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	58.6	4.1e-129
>prophage 44
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	632132	632762	2090133		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_005706552.1|632132_632762_-	repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.0	4.1e-10
>prophage 45
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	637082	638513	2090133		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_005706531.1|637082_638513_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	28.3	1.0e-32
>prophage 46
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	642728	655961	2090133		Acinetobacter_phage(22.22%)	13	NA	NA
WP_005706565.1|642728_644582_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.3	9.7e-108
WP_005706561.1|644617_645250_-	DUF2625 family protein	NA	NA	NA	NA	NA
WP_005706558.1|645369_645891_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005706573.1|645900_646224_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	48.6	3.4e-24
WP_005706518.1|646383_646767_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	74.2	1.5e-50
WP_005706550.1|646822_648049_-	IscS subfamily cysteine desulfurase	NA	A0A2K9L2Y3	Tupanvirus	23.5	3.2e-14
WP_005706523.1|648110_648563_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_005706527.1|648900_650289_+	membrane protein	NA	NA	NA	NA	NA
WP_005706546.1|650364_650919_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.6	2.5e-27
WP_005706530.1|651019_652576_+	anthranilate synthase component 1	NA	A0A0B5J984	Pandoravirus	33.3	2.0e-21
WP_005706532.1|652594_653173_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.0	3.0e-39
WP_005706581.1|653265_654267_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	36.2	2.2e-50
WP_005706576.1|654323_655961_-	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.9	7.2e-155
>prophage 47
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	667367	676910	2090133	transposase	Vibriophage(14.29%)	10	NA	NA
WP_005706572.1|667367_667835_-	hypothetical protein	NA	I6X231	Vibriophage	62.5	1.6e-51
WP_005706528.1|669059_669479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706574.1|669475_669670_-	MarR family transcriptional regulator	NA	A0A2I7RH26	Vibrio_phage	41.0	8.0e-05
WP_005706914.1|669961_670954_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
WP_005707534.1|671103_671811_-	NAD-dependent deacetylase	NA	A0A097EY61	Escherichia_phage	31.5	1.4e-14
WP_100208033.1|671868_673875_-	ATP-binding protein	NA	A0A0K1L651	Scale_drop_disease_virus	29.1	2.1e-07
WP_005707552.1|674035_674716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005707527.1|674777_675719_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_005707515.1|675792_676557_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	35.7	5.9e-35
WP_005707554.1|676649_676910_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	51.2	4.2e-17
>prophage 48
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	679979	681837	2090133		Synechococcus_phage(50.0%)	2	NA	NA
WP_005707541.1|679979_680768_+	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	24.5	5.0e-05
WP_005707521.1|680850_681837_+	capsular polysaccharide synthesis protein	NA	A0A0N7KVT5	Yellowstone_lake_phycodnavirus	33.9	4.3e-14
>prophage 49
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	692068	703403	2090133		Catovirus(33.33%)	7	NA	NA
WP_005707529.1|692068_696007_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	27.0	6.8e-50
WP_005707517.1|696088_696700_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_005707509.1|696932_698012_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_005707546.1|698064_699069_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	44.1	2.3e-71
WP_005707571.1|699215_700376_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_005707577.1|700498_701311_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_005707550.1|701852_703403_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.1	3.9e-09
>prophage 50
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	707768	710530	2090133	tRNA	Elephant_endotheliotropic_herpesvirus(33.33%)	3	NA	NA
WP_167499288.1|707768_708500_-	uracil-DNA glycosylase	NA	A0A060LC41	Elephant_endotheliotropic_herpesvirus	55.9	1.2e-53
WP_005707564.1|708641_709028_+	autonomous glycyl radical cofactor GrcA	NA	D9ICE0	Escherichia_virus	61.4	2.8e-33
WP_100208032.1|709129_710530_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	77.4	1.5e-164
>prophage 51
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	715255	717991	2090133		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_005707574.1|715255_716560_+	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	34.6	4.7e-32
WP_005707549.1|716689_717991_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	82.7	1.0e-180
>prophage 52
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	725761	729158	2090133		Bacillus_phage(50.0%)	2	NA	NA
WP_005707512.1|725761_727780_-	DNA helicase Rep	NA	A7KV33	Bacillus_phage	38.8	4.4e-114
WP_005707523.1|728045_729158_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	40.6	1.3e-30
>prophage 53
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	733891	745877	2090133	tRNA	Bacillus_virus(42.86%)	10	NA	NA
WP_039863429.1|733891_734524_+	thiamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.0	1.4e-21
WP_005707589.1|734571_736602_-	oligopeptidase A	NA	A0A1V0SID3	Klosneuvirus	24.5	3.8e-57
WP_005707498.1|736661_737135_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4W084	Pandoravirus	33.8	1.3e-11
WP_005707587.1|737134_738568_-	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	32.6	7.0e-29
WP_005707519.1|738736_739183_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_005707505.1|739400_740396_-	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA	NA
WP_005707588.1|740811_741798_+	amidohydrolase family protein	NA	A0A076FFX9	Aureococcus_anophage	29.7	1.4e-33
WP_005707511.1|742282_744049_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	29.2	1.9e-12
WP_005707530.1|744107_744980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005707522.1|745298_745877_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	33.3	4.2e-09
>prophage 54
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	750730	752401	2090133		Tupanvirus(100.0%)	1	NA	NA
WP_005707524.1|750730_752401_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	26.0	7.3e-38
>prophage 55
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	758379	765215	2090133	integrase	Hokovirus(25.0%)	6	748269:748284	775445:775460
748269:748284	attL	ATTTTTTGTTTATTAA	NA	NA	NA	NA
WP_005707533.1|758379_760101_+	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	31.5	2.1e-16
WP_005707503.1|760180_760681_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_005707542.1|760739_761699_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	36.4	1.2e-40
WP_005707591.1|762350_763376_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	38.7	9.3e-60
WP_005707597.1|763483_763690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863435.1|763925_765215_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.5	9.1e-20
775445:775460	attR	TTAATAAACAAAAAAT	NA	NA	NA	NA
>prophage 56
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	771239	776535	2090133	transposase	Burkholderia_phage(25.0%)	4	NA	NA
WP_005706471.1|771239_772817_-	AAA family ATPase	NA	C7BGE8	Burkholderia_phage	26.6	1.1e-06
WP_039863227.1|772806_773688_-	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	31.6	1.3e-22
WP_115364310.1|774025_775347_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	46.6	3.2e-60
WP_078208111.1|775533_776535_-	adhesin	NA	A0A1V0DXR3	Yersinia_phage	41.3	4.4e-06
>prophage 57
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	788630	791102	2090133	integrase	Stenotrophomonas_phage(50.0%)	2	785333:785347	789183:789197
785333:785347	attL	TGAATACAGAAGAAC	NA	NA	NA	NA
WP_005706639.1|788630_789083_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	42.4	4.1e-12
WP_005706641.1|789629_791102_-	exodeoxyribonuclease VII large subunit	NA	A0A2P1EMK6	Moumouvirus	38.3	1.8e-32
789183:789197	attR	TGAATACAGAAGAAC	NA	NA	NA	NA
>prophage 58
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	800054	806894	2090133	transposase	Organic_Lake_phycodnavirus(25.0%)	6	NA	NA
WP_005706633.1|800054_801554_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.2	4.7e-12
WP_005706644.1|801568_802579_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_005706637.1|802705_803653_+	2-hydroxyacid dehydrogenase	NA	A0A1M7XU89	Cedratvirus	29.7	6.0e-29
WP_005706638.1|803762_804935_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005706914.1|805149_806142_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
WP_005707129.1|806213_806894_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.5	1.8e-35
>prophage 59
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	813772	823946	2090133	tRNA	Bacillus_phage(25.0%)	9	NA	NA
WP_005707089.1|813772_814978_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	58.9	2.7e-111
WP_005707101.1|815036_815543_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_039863376.1|815549_816314_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.1	7.0e-36
WP_005707160.1|816392_816911_-	porin family protein	NA	NA	NA	NA	NA
WP_005707091.1|816998_817721_-	two-component system response regulator ArcA	NA	NA	NA	NA	NA
WP_005707120.1|817848_818541_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_005707136.1|818537_819824_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	46.6	9.8e-91
WP_005707132.1|820069_821035_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_005707102.1|821129_823946_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9V7W4	Bandra_megavirus	26.5	7.9e-85
>prophage 60
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	841254	843092	2090133	protease	Agrobacterium_phage(50.0%)	2	NA	NA
WP_005707144.1|841254_841848_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	64.5	4.5e-67
WP_005707161.1|841847_843092_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.3	5.9e-117
>prophage 61
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	851144	851576	2090133		Salmonella_phage(100.0%)	1	NA	NA
WP_005707115.1|851144_851576_+	PAS sensor domain-containing protein	NA	A0A1B0V854	Salmonella_phage	42.1	1.8e-17
>prophage 62
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	854918	858623	2090133		Rhizobium_phage(50.0%)	3	NA	NA
WP_005707122.1|854918_856022_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	31.9	4.5e-44
WP_005707156.1|856043_857375_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_005707125.1|857540_858623_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	42.2	7.9e-09
>prophage 63
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	863774	864407	2090133		Indivirus(100.0%)	1	NA	NA
WP_005707127.1|863774_864407_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A1V0SE00	Indivirus	25.2	8.7e-08
>prophage 64
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	873636	875892	2090133		Mimivirus(50.0%)	2	NA	NA
WP_005707264.1|873636_874482_+	DNA ligase	NA	A0A1X9VNU1	Mimivirus	30.0	4.4e-31
WP_005707219.1|874617_875892_+	SLC13/DASS family transporter	NA	Q6A201	Oenococcus_phage	35.2	1.3e-55
>prophage 65
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	906483	907668	2090133		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_005707260.1|906483_907668_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	47.3	1.5e-85
>prophage 66
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	915401	917477	2090133		Acinetobacter_phage(100.0%)	1	NA	NA
WP_005707192.1|915401_917477_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.9	1.6e-10
>prophage 67
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	923771	931345	2090133		Flavobacterium_phage(33.33%)	7	NA	NA
WP_005707191.1|923771_925514_+	DNA primase	NA	A0A1B0WMR3	Flavobacterium_phage	29.8	5.1e-34
WP_039863386.1|925517_926201_-	DNA utilization protein GntX	NA	NA	NA	NA	NA
WP_005707257.1|926331_927561_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.1	7.9e-106
WP_005707186.1|927645_928305_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_005707226.1|928553_929177_+	peptidase propeptide and YpeB domain protein	NA	NA	NA	NA	NA
WP_005707200.1|929268_929934_+	response regulator	NA	NA	NA	NA	NA
WP_005707249.1|929971_931345_+	GHKL domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.6	8.2e-11
>prophage 68
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	954245	966206	2090133		Lactococcus_phage(50.0%)	4	NA	NA
WP_005707203.1|954245_956606_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	34.4	3.2e-71
WP_005707222.1|956665_957562_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005707199.1|957694_958111_+	DoxX family protein	NA	NA	NA	NA	NA
WP_167499289.1|958223_966206_-	autotransporter domain-containing protein	NA	Q9LA58	Enterobacterial_phage	34.9	3.7e-71
>prophage 69
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	971585	972380	2090133		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_005705208.1|971585_972380_+	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	28.5	4.1e-07
>prophage 70
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	976718	982652	2090133		Bacillus_virus(33.33%)	6	NA	NA
WP_005705221.1|976718_977543_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	34.4	5.0e-32
WP_039862893.1|977624_978917_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_005705228.1|979036_979762_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.0	4.9e-15
WP_005705203.1|979847_980783_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_005705217.1|980900_981647_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_005705219.1|981668_982652_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	23.6	5.1e-07
>prophage 71
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1029424	1035773	2090133	tRNA,transposase	Wolbachia_phage(20.0%)	5	NA	NA
WP_005706914.1|1029424_1030417_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
WP_005706009.1|1030663_1031929_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	M1IB95	Acanthocystis_turfacea_Chlorella_virus	25.9	1.0e-07
WP_005706008.1|1031913_1032807_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.6	1.3e-36
WP_078208097.1|1032885_1034070_-	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	25.3	2.9e-12
WP_005706118.1|1034822_1035773_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	33.1	6.7e-28
>prophage 72
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1052629	1053967	2090133		Klosneuvirus(100.0%)	1	NA	NA
WP_005706142.1|1052629_1053967_+	ATP-dependent RNA helicase SrmB	NA	A0A1V0SIR5	Klosneuvirus	31.2	3.5e-51
>prophage 73
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1058493	1067376	2090133		uncultured_Mediterranean_phage(25.0%)	10	NA	NA
WP_005706145.1|1058493_1059270_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.8	7.0e-60
WP_005706135.1|1059286_1059871_+	DedA family protein	NA	NA	NA	NA	NA
WP_005706152.1|1059966_1060470_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_005706098.1|1060482_1060680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005706151.1|1060712_1061942_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.1	3.5e-05
WP_005706122.1|1062002_1062572_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_005706107.1|1062783_1064022_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005706143.1|1064025_1065918_-	polysaccharide biosynthesis protein	NA	L7Y3T9	Megavirus	30.0	1.5e-26
WP_005706110.1|1065922_1066471_-	sugar transferase	NA	NA	NA	NA	NA
WP_005706125.1|1066470_1067376_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A0K0KWM5	Prochlorococcus_phage	26.1	1.9e-08
>prophage 74
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1075421	1078762	2090133		Lake_Baikal_phage(50.0%)	5	NA	NA
WP_005706127.1|1075421_1075763_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	47.7	2.7e-24
WP_005706134.1|1075878_1076832_-	magnesium/cobalt transporter CorA	NA	NA	NA	NA	NA
WP_005706144.1|1077183_1077408_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA	NA
WP_005706105.1|1077411_1078023_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_005706112.1|1078009_1078762_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	28.9	9.3e-25
>prophage 75
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1103575	1105523	2090133		Synechococcus_phage(100.0%)	2	NA	NA
WP_005705982.1|1103575_1104088_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	4.0e-19
WP_005705937.1|1104596_1105523_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SL51	Synechococcus_phage	37.3	3.0e-33
>prophage 76
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1111803	1112787	2090133		Tupanvirus(100.0%)	1	NA	NA
WP_005706006.1|1111803_1112787_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9L0E9	Tupanvirus	22.4	1.7e-10
>prophage 77
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1120328	1126240	2090133	tRNA,lysis	uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_005705953.1|1120328_1120937_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.2	2.4e-23
WP_005705979.1|1121047_1122001_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	24.2	2.9e-07
WP_005705973.1|1122002_1122269_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_005705946.1|1122283_1122652_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_005705949.1|1122653_1123007_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	35.9	2.0e-14
WP_039863085.1|1123006_1123681_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005705994.1|1123769_1124486_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_005705991.1|1124570_1124792_+|lysis	lysis protein	lysis	NA	NA	NA	NA
WP_039863088.1|1124805_1125870_+	MFS transporter	NA	NA	NA	NA	NA
WP_005705952.1|1125874_1126240_+	chromosome condensation protein CcrB	NA	A0A2H4J148	uncultured_Caudovirales_phage	38.7	1.4e-10
>prophage 78
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1131472	1132465	2090133	transposase	Wolbachia_phage(100.0%)	1	NA	NA
WP_005706914.1|1131472_1132465_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
>prophage 79
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1137643	1139089	2090133		Tetraselmis_virus(100.0%)	1	NA	NA
WP_005706481.1|1137643_1139089_+	sulfatase-like hydrolase/transferase	NA	A0A2P0VMN7	Tetraselmis_virus	29.7	7.8e-12
>prophage 80
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1147484	1148807	2090133		Erwinia_phage(100.0%)	1	NA	NA
WP_005706505.1|1147484_1148807_+	HslU--HslV peptidase ATPase subunit	NA	A0A173GFL6	Erwinia_phage	29.2	3.5e-43
>prophage 81
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1155625	1156516	2090133		Vibrio_phage(100.0%)	1	NA	NA
WP_005706506.1|1155625_1156516_-	hypothetical protein	NA	A0A0D4DB39	Vibrio_phage	59.5	6.6e-46
>prophage 82
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1164838	1165831	2090133	transposase	Wolbachia_phage(100.0%)	1	NA	NA
WP_005706914.1|1164838_1165831_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
>prophage 83
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1172308	1172932	2090133		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_005706588.1|1172308_1172932_-	energy-coupling factor ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	28.2	1.2e-09
>prophage 84
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1183853	1184603	2090133		Planktothrix_phage(100.0%)	1	NA	NA
WP_005706615.1|1183853_1184603_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.9	2.6e-35
>prophage 85
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1203068	1205663	2090133		Klosneuvirus(100.0%)	1	NA	NA
WP_005706410.1|1203068_1205663_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.3	2.3e-30
>prophage 86
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1210867	1212759	2090133		Synechococcus_phage(50.0%)	2	NA	NA
WP_005706421.1|1210867_1211473_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	57.1	5.5e-20
WP_005706411.1|1211580_1212759_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	46.4	2.2e-89
>prophage 87
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1233101	1235337	2090133		Cronobacter_phage(50.0%)	2	NA	NA
WP_050855317.1|1233101_1233440_+	hypothetical protein	NA	G0ZNF1	Cronobacter_phage	41.4	1.0e-10
WP_005706420.1|1233516_1235337_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HRE7	Paramecium_bursaria_Chlorella_virus	46.8	1.8e-135
>prophage 88
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1238469	1240338	2090133		Tupanvirus(100.0%)	1	NA	NA
WP_005706419.1|1238469_1240338_+	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	29.3	4.7e-17
>prophage 89
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1245493	1254070	2090133		Tetraselmis_virus(50.0%)	2	NA	NA
WP_005706424.1|1245493_1249522_+	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VP65	Tetraselmis_virus	29.7	9.4e-23
WP_005706428.1|1249783_1254070_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.7	2.2e-70
>prophage 90
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1259727	1261386	2090133		Streptococcus_phage(100.0%)	1	NA	NA
WP_005706435.1|1259727_1261386_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	35.2	1.9e-78
>prophage 91
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1279378	1283563	2090133		Streptococcus_phage(50.0%)	3	NA	NA
WP_005706018.1|1279378_1280959_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	26.2	1.3e-31
WP_005706017.1|1281148_1281568_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_005706024.1|1281691_1283563_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	31.2	8.5e-35
>prophage 92
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1288400	1289399	2090133		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_005706029.1|1288400_1289399_+	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	41.3	1.6e-64
>prophage 93
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1298344	1302241	2090133		Burkholderia_phage(100.0%)	1	NA	NA
WP_005705183.1|1298344_1302241_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	53.2	3.1e-116
>prophage 94
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1311394	1312024	2090133		Erwinia_phage(100.0%)	1	NA	NA
WP_039863206.1|1311394_1312024_+	dTMP kinase	NA	W8D0J5	Erwinia_phage	36.3	5.6e-23
>prophage 95
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1319322	1322564	2090133		Staphylococcus_phage(50.0%)	3	NA	NA
WP_005706364.1|1319322_1320870_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.7	4.3e-101
WP_005706359.1|1320916_1321381_-	transcriptional regulator AsnC	NA	NA	NA	NA	NA
WP_005706361.1|1321571_1322564_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	40.4	5.1e-55
>prophage 96
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1329316	1331783	2090133	integrase,transposase	Macacine_betaherpesvirus(50.0%)	5	1313755:1313770	1336263:1336278
1313755:1313770	attL	TTAAATCGACCGCTTG	NA	NA	NA	NA
WP_078208118.1|1329316_1329577_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	54.1	1.1e-20
WP_039863416.1|1330217_1330433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115364327.1|1330710_1330992_+	helix-turn-helix domain-containing protein	NA	A0A1B1P776	Bacillus_phage	38.0	1.8e-05
WP_081484808.1|1331445_1331631_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1B1P773	Bacillus_phage	58.3	1.3e-12
WP_078208116.1|1331627_1331783_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.0	4.0e-07
1336263:1336278	attR	CAAGCGGTCGATTTAA	NA	NA	NA	NA
>prophage 97
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1339769	1343130	2090133		Streptococcus_phage(50.0%)	2	NA	NA
WP_005707400.1|1339769_1341875_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.0	1.0e-57
WP_078177606.1|1341945_1343130_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	25.3	2.9e-12
>prophage 98
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1346409	1354366	2090133	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_005707169.1|1346409_1349274_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.3	7.9e-149
WP_078208119.1|1349531_1349642_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_078208115.1|1349710_1349992_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_005707015.1|1350106_1351810_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	39.5	1.6e-11
WP_005707068.1|1351991_1352849_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_005707043.1|1353009_1353696_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
WP_005707040.1|1353682_1354366_+	type-2 restriction enzyme HhaII	NA	M1HMA1	Paramecium_bursaria_Chlorella_virus	32.6	1.5e-10
>prophage 99
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1365469	1368424	2090133		Klosneuvirus(100.0%)	1	NA	NA
WP_005707045.1|1365469_1368424_+	pitrilysin	NA	A0A1V0SJA4	Klosneuvirus	25.9	9.5e-73
>prophage 100
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1373040	1373886	2090133		Pandoravirus(100.0%)	1	NA	NA
WP_005707064.1|1373040_1373886_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	27.0	2.1e-17
>prophage 101
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1384806	1386255	2090133		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_005707028.1|1384806_1386255_+	molybdate ABC transporter ATP-binding protein ModF	NA	A0A2R8FG22	Brazilian_cedratvirus	29.1	9.5e-10
>prophage 102
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1389925	1390678	2090133		Bacillus_virus(100.0%)	1	NA	NA
WP_039863360.1|1389925_1390678_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	2.3e-23
>prophage 103
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1394631	1395369	2090133		Synechococcus_phage(100.0%)	1	NA	NA
WP_005707035.1|1394631_1395369_-	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	56.6	7.2e-46
>prophage 104
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1399776	1400220	2090133		Clostridium_phage(100.0%)	1	NA	NA
WP_005707051.1|1399776_1400220_+	peptidoglycan-binding protein LysM	NA	J9QDY6	Clostridium_phage	43.3	2.0e-06
>prophage 105
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1408139	1409048	2090133		Mycobacterium_phage(100.0%)	1	NA	NA
WP_005707063.1|1408139_1409048_-	tyrosine recombinase XerC	NA	A0A0F6SJK8	Mycobacterium_phage	29.8	7.3e-16
>prophage 106
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1416468	1424253	2090133		Enterobacterial_phage(100.0%)	1	NA	NA
WP_115364325.1|1416468_1424253_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	32.6	1.2e-82
>prophage 107
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1439308	1454094	2090133		Klosneuvirus(14.29%)	14	NA	NA
WP_005706918.1|1439308_1440673_-	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.3	1.1e-26
WP_005706939.1|1441024_1441195_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_005599762.1|1441206_1441443_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_005706995.1|1442268_1444752_-	trimethylamine-N-oxide reductase TorA	NA	A0A077SK27	Escherichia_phage	27.0	8.3e-62
WP_005706941.1|1444760_1445387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706985.1|1445594_1446260_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_005706923.1|1446422_1447634_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.0	2.6e-37
WP_005706994.1|1447633_1448089_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	1.8e-47
WP_005706993.1|1448134_1448743_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_005706947.1|1448752_1448974_+	YheU family protein	NA	NA	NA	NA	NA
WP_005706936.1|1449044_1449740_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
WP_005706954.1|1449814_1451755_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.0	6.5e-62
WP_005706961.1|1451836_1453078_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	44.3	1.1e-91
WP_005706965.1|1453158_1454094_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	34.5	7.0e-38
>prophage 108
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1472086	1472938	2090133		Streptococcus_phage(100.0%)	1	NA	NA
WP_005706990.1|1472086_1472938_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	40.3	2.0e-44
>prophage 109
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1476688	1490330	2090133		Yellowstone_lake_phycodnavirus(16.67%)	13	NA	NA
WP_005706986.1|1476688_1477840_-	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	33.0	2.3e-22
WP_050855326.1|1477933_1478398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005706974.1|1478466_1480368_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.7	1.3e-147
WP_005706970.1|1480728_1482765_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	33.7	4.4e-93
WP_005706931.1|1482773_1483007_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_005706929.1|1483300_1484107_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_005706950.1|1484326_1484992_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	55.2	7.6e-55
WP_005706935.1|1485120_1485786_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_005706926.1|1485785_1486457_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_005706980.1|1486460_1487183_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_005706968.1|1487212_1487947_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	37.0	4.2e-30
WP_005706967.1|1488220_1488997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863319.1|1490129_1490330_+	helix-turn-helix transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	61.5	1.3e-15
>prophage 110
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1497969	1498203	2090133		Ralstonia_phage(100.0%)	1	NA	NA
WP_005707420.1|1497969_1498203_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.8	6.8e-11
>prophage 111
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1502917	1509910	2090133		Mollivirus(25.0%)	8	NA	NA
WP_005706763.1|1502917_1503775_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	38.2	1.2e-55
WP_005706760.1|1504087_1504750_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_005706764.1|1504813_1505458_-	adenylate kinase	NA	A0A1B4XWI3	Tenacibaculum_phage	27.9	1.7e-11
WP_005706762.1|1505514_1506111_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_005706766.1|1506088_1507060_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_005706765.1|1507446_1508334_+	transcriptional regulator GcvA	NA	Q6JIH3	Burkholderia_virus	26.0	1.9e-21
WP_005706761.1|1508342_1509017_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_167499290.1|1509175_1509910_-	hypothetical protein	NA	Q9MCI8	Enterobacteria_phage	64.0	5.1e-20
>prophage 112
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1516909	1520344	2090133	tRNA	Moumouvirus(50.0%)	4	NA	NA
WP_005705436.1|1516909_1518967_+|tRNA	methionine--tRNA ligase	tRNA	M1PWC3	Moumouvirus	29.0	2.8e-55
WP_005705381.1|1519011_1519368_-	YcfL family protein	NA	NA	NA	NA	NA
WP_005705421.1|1519369_1519735_-	purine nucleoside phosphoramidase	NA	NA	NA	NA	NA
WP_005705431.1|1519747_1520344_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	41.8	7.1e-28
>prophage 113
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1544419	1550457	2090133		Cyanophage(33.33%)	5	NA	NA
WP_005705386.1|1544419_1545904_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	38.9	7.6e-87
WP_005705393.1|1545956_1546655_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_005705414.1|1546864_1548172_+	MFS transporter	NA	NA	NA	NA	NA
WP_005705395.1|1548355_1549810_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.4	9.5e-42
WP_005705412.1|1549926_1550457_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	36.9	3.7e-20
>prophage 114
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1555066	1555609	2090133		Salmonella_phage(100.0%)	1	NA	NA
WP_005705406.1|1555066_1555609_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	53.9	1.7e-44
>prophage 115
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1558665	1561758	2090133		Synechococcus_phage(33.33%)	4	NA	NA
WP_005705402.1|1558665_1559202_-	HAD-IIIA family hydrolase	NA	A0A222YVZ6	Synechococcus_phage	34.2	1.8e-06
WP_005705435.1|1559268_1559961_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_005705380.1|1560482_1560746_+	glutaredoxin, GrxA family	NA	A0A2I7SAE2	Vibrio_phage	50.6	8.0e-16
WP_005705396.1|1560807_1561758_-	transaldolase	NA	A0A127KNC6	Cyanophage	28.2	5.7e-11
>prophage 116
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1570812	1572787	2090133		Planktothrix_phage(50.0%)	2	NA	NA
WP_005707483.1|1570812_1571790_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.1	6.0e-16
WP_005707456.1|1571806_1572787_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.2	1.6e-16
>prophage 117
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1576600	1578328	2090133	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_005707476.1|1576600_1578328_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	35.4	5.9e-91
>prophage 118
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1584504	1586983	2090133	protease	Bacillus_virus(50.0%)	2	NA	NA
WP_005707480.1|1584504_1585308_-	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	32.2	1.6e-22
WP_005707449.1|1585567_1586983_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	32.3	6.9e-29
>prophage 119
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1596125	1615038	2090133		Streptococcus_phage(11.11%)	14	NA	NA
WP_005707460.1|1596125_1596755_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.7	2.0e-20
WP_005707467.1|1596779_1597337_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	32.6	1.0e-07
WP_005707482.1|1597646_1599206_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_005707443.1|1599287_1601306_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.1	4.2e-88
WP_005707457.1|1601381_1601936_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_005707454.1|1602258_1602471_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	54.0	9.3e-15
WP_039863422.1|1603233_1604760_+	catalase	NA	A0A2K9L0T1	Tupanvirus	47.5	5.6e-101
WP_005707435.1|1604829_1605624_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_005707437.1|1605700_1607890_-	DNA helicase II	NA	A7KV33	Bacillus_phage	36.3	8.0e-109
WP_005707471.1|1608091_1609087_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005707468.1|1609203_1610724_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_039863419.1|1610710_1611793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.8	4.2e-26
WP_005707452.1|1611840_1612965_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	25.8	9.0e-24
WP_039863418.1|1613076_1615038_+	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	36.5	1.8e-03
>prophage 120
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1622860	1624159	2090133		Pithovirus(100.0%)	1	NA	NA
WP_005706194.1|1622860_1624159_+	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	36.9	5.1e-71
>prophage 121
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1629053	1630764	2090133		Dickeya_phage(50.0%)	3	NA	NA
WP_005706212.1|1629053_1629299_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	69.4	6.3e-07
WP_005706210.1|1629308_1629956_+	hemolysin regulation protein AhpA	NA	NA	NA	NA	NA
WP_078208108.1|1630047_1630764_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	42.2	2.9e-20
>prophage 122
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1642135	1647356	2090133		uncultured_Mediterranean_phage(66.67%)	4	NA	NA
WP_005706204.1|1642135_1643983_+	translational GTPase TypA	NA	A0A1B0RXH7	Streptococcus_phage	42.9	5.3e-21
WP_005706209.1|1644149_1645124_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.3	1.6e-45
WP_078208106.1|1645134_1646982_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_005706203.1|1647056_1647356_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.2	3.9e-11
>prophage 123
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1654292	1654934	2090133		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_005706198.1|1654292_1654934_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	56.8	6.4e-59
>prophage 124
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1669283	1675215	2090133	tRNA	Enterococcus_phage(25.0%)	5	NA	NA
WP_005706163.1|1669283_1670144_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.7	1.1e-29
WP_005706186.1|1670264_1671740_+	ribonuclease G	NA	NA	NA	NA	NA
WP_005706188.1|1671868_1673371_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	37.5	4.5e-87
WP_005706202.1|1673472_1673790_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	48.9	1.6e-18
WP_005706175.1|1673922_1675215_-	purine permease	NA	Q9KX94	Enterobacteria_phage	27.6	1.3e-21
>prophage 125
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1679333	1683906	2090133	tRNA	Bacillus_phage(66.67%)	6	NA	NA
WP_005706174.1|1679333_1680605_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	22.8	1.4e-20
WP_005706157.1|1680617_1681241_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_078208109.1|1681315_1682191_+	DUF535 family protein	NA	NA	NA	NA	NA
WP_005707412.1|1682213_1682903_+	nicotinamide riboside transporter PnuC	NA	U5J9C5	Bacillus_phage	39.5	5.5e-40
WP_115364320.1|1683062_1683194_+	DUF535 family protein	NA	NA	NA	NA	NA
WP_005707412.1|1683216_1683906_+	nicotinamide riboside transporter PnuC	NA	U5J9C5	Bacillus_phage	39.5	5.5e-40
>prophage 126
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1698472	1699738	2090133		Aeromonas_phage(100.0%)	1	NA	NA
WP_005705368.1|1698472_1699738_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.1	2.1e-101
>prophage 127
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1703195	1707926	2090133	transposase	Mycoplasma_phage(33.33%)	4	NA	NA
WP_005705356.1|1703195_1704689_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.1	1.0e-51
WP_005706914.1|1704937_1705930_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	28.1	3.8e-18
WP_039863406.1|1705991_1707059_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005707376.1|1707098_1707926_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	45.3	9.8e-60
>prophage 128
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1718670	1719672	2090133		Escherichia_phage(100.0%)	1	NA	NA
WP_005707375.1|1718670_1719672_-	TerC/Alx family metal homeostasis membrane protein	NA	A0A1D7XFL1	Escherichia_phage	50.6	4.3e-78
>prophage 129
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1723276	1724284	2090133		Bacillus_phage(100.0%)	1	NA	NA
WP_005707377.1|1723276_1724284_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	24.1	1.8e-07
>prophage 130
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1730756	1731890	2090133		Planktothrix_phage(100.0%)	1	NA	NA
WP_005707344.1|1730756_1731890_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	G9BWD6	Planktothrix_phage	35.5	5.1e-27
>prophage 131
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1737753	1743943	2090133	tRNA	Vibrio_phage(25.0%)	6	NA	NA
WP_005707295.1|1737753_1738605_+	thymidylate synthase	NA	H9EB68	Vibrio_phage	72.1	1.7e-120
WP_005707382.1|1738663_1739971_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.9	1.8e-95
WP_005707273.1|1739995_1740475_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	44.2	1.3e-24
WP_005707276.1|1740511_1741915_-	GTP-binding protein YcjX	NA	NA	NA	NA	NA
WP_005707315.1|1741972_1742812_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_005707299.1|1742848_1743943_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.2	3.3e-47
>prophage 132
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1748477	1760901	2090133		Tupanvirus(16.67%)	8	NA	NA
WP_005707391.1|1748477_1749494_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	49.8	3.2e-89
WP_005707355.1|1749642_1750935_+	MFS transporter	NA	NA	NA	NA	NA
WP_005707289.1|1751029_1752943_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	37.1	7.0e-93
WP_005707328.1|1753020_1756494_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	35.2	1.0e-187
WP_100208027.1|1756746_1757845_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	42.4	6.3e-06
WP_005707329.1|1757922_1758897_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_005707338.1|1758991_1760188_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	36.6	3.0e-57
WP_005707343.1|1760199_1760901_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	37.1	4.4e-29
>prophage 133
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1766568	1770584	2090133		Acinetobacter_phage(33.33%)	3	NA	NA
WP_005707366.1|1766568_1767981_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	37.7	7.3e-31
WP_005707354.1|1768018_1768510_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.8	2.9e-27
WP_005707381.1|1768739_1770584_-	response regulator	NA	A0A1V0SGX0	Hokovirus	29.4	2.1e-41
>prophage 134
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1778132	1783830	2090133		Staphylococcus_phage(60.0%)	6	NA	NA
WP_005707361.1|1778132_1779233_+	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	26.3	5.9e-20
WP_005707290.1|1779708_1780794_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.1	4.9e-51
WP_005707374.1|1780793_1781441_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.3	2.0e-44
WP_005707386.1|1781450_1781993_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_005707311.1|1782019_1783219_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	50.5	8.8e-110
WP_005707357.1|1783368_1783830_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	55.4	2.8e-40
>prophage 135
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1790948	1795822	2090133		Vibrio_phage(50.0%)	3	NA	NA
WP_005707363.1|1790948_1791953_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	44.6	2.7e-72
WP_005707282.1|1792011_1792371_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_005707373.1|1793248_1795822_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	33.9	1.9e-122
>prophage 136
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1802097	1804324	2090133		Synechococcus_phage(50.0%)	2	NA	NA
WP_039863409.1|1802097_1802988_+	RimK family alpha-L-glutamate ligase	NA	A0A1D8KN85	Synechococcus_phage	35.1	1.5e-29
WP_039863408.1|1802989_1804324_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	27.5	5.5e-36
>prophage 137
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1808783	1813630	2090133	tRNA	Tupanvirus(33.33%)	3	NA	NA
WP_005707277.1|1808783_1810715_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.9	3.6e-129
WP_005707353.1|1810940_1812716_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	26.4	2.3e-42
WP_005707268.1|1812829_1813630_-	glycosyltransferase	NA	F2Y1U7	Organic_Lake_phycodnavirus	31.1	2.8e-19
>prophage 138
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1821000	1821720	2090133		Bacillus_virus(100.0%)	1	NA	NA
WP_005656344.1|1821000_1821720_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	8.0e-26
>prophage 139
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1825368	1829826	2090133	transposase	Bacillus_phage(50.0%)	5	NA	NA
WP_158077816.1|1825368_1826175_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	43.6	2.3e-53
WP_005705882.1|1826171_1826546_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005705874.1|1826906_1827911_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_005705885.1|1828137_1828533_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_005705898.1|1828635_1829826_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	24.7	6.4e-20
>prophage 140
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1838767	1840063	2090133		Moraxella_phage(100.0%)	1	NA	NA
WP_005705906.1|1838767_1840063_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	6.4e-66
>prophage 141
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1847344	1850292	2090133	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_005705879.1|1847344_1848532_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	24.3	1.5e-13
WP_005705904.1|1848912_1850292_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.0	1.1e-55
>prophage 142
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1858358	1861046	2090133		Bacillus_phage(100.0%)	1	NA	NA
WP_005705922.1|1858358_1861046_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	A0A172JHV7	Bacillus_phage	30.7	2.3e-105
>prophage 143
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1865532	1866828	2090133		Mycoplasma_phage(100.0%)	1	NA	NA
WP_039863077.1|1865532_1866828_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	31.7	1.8e-31
>prophage 144
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1869870	1870473	2090133		Cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_005705908.1|1869870_1870473_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A0N7HHA4	Cassava_brown_streak_virus	34.5	3.2e-12
>prophage 145
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1875892	1876918	2090133	integrase	Haemophilus_virus(100.0%)	1	1873269:1873283	1883863:1883877
1873269:1873283	attL	GCTTGAATGCCTGCA	NA	NA	NA	NA
WP_005705683.1|1875892_1876918_+|integrase	tyrosine-type recombinase/integrase	integrase	Q94N03	Haemophilus_virus	54.7	5.2e-95
WP_005705683.1|1875892_1876918_+|integrase	tyrosine-type recombinase/integrase	integrase	Q94N03	Haemophilus_virus	54.7	5.2e-95
1883863:1883877	attR	GCTTGAATGCCTGCA	NA	NA	NA	NA
>prophage 146
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1892385	1893009	2090133		Murmansk_poxvirus(100.0%)	1	NA	NA
WP_005705813.1|1892385_1893009_+	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	30.6	1.0e-16
>prophage 147
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1899330	1902127	2090133		Planktothrix_phage(50.0%)	2	NA	NA
WP_005705644.1|1899330_1901316_+	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	1.7e-12
WP_005705671.1|1901317_1902127_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	2.5e-20
>prophage 148
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1921547	1926869	2090133	tRNA	Bodo_saltans_virus(33.33%)	5	NA	NA
WP_005705843.1|1921547_1922525_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	A0A2H4UV25	Bodo_saltans_virus	28.5	8.1e-05
WP_005705785.1|1922683_1923457_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_005705619.1|1923521_1924550_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.8	3.1e-111
WP_005705676.1|1924596_1924905_+	iron donor protein CyaY	NA	NA	NA	NA	NA
WP_005705706.1|1925063_1926869_+	ATP-dependent DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	37.2	8.1e-83
>prophage 149
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1935895	1937506	2090133		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005705667.1|1935895_1937506_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	51.1	2.6e-141
>prophage 150
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1940787	1941741	2090133		Orpheovirus(100.0%)	1	NA	NA
WP_005705649.1|1940787_1941741_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	9.5e-59
>prophage 151
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1946967	1951457	2090133		Staphylococcus_phage(50.0%)	5	NA	NA
WP_005705725.1|1946967_1948656_-	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	26.5	2.9e-34
WP_005705629.1|1948662_1949112_-	positive regulator of sigma(E), RseC/MucC	NA	NA	NA	NA	NA
WP_005705693.1|1949122_1950067_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_005705794.1|1950241_1950829_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_078208066.1|1950881_1951457_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	27.6	2.8e-05
>prophage 152
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1959532	1960462	2090133	integrase	Listeria_phage(100.0%)	1	1957185:1957199	1971531:1971545
1957185:1957199	attL	TCTTTTTATGGGCGG	NA	NA	NA	NA
WP_005705717.1|1959532_1960462_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.2	8.1e-79
WP_005705717.1|1959532_1960462_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.2	8.1e-79
1971531:1971545	attR	CCGCCCATAAAAAGA	NA	NA	NA	NA
>prophage 153
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1965948	1968477	2090133		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005705774.1|1965948_1968477_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.8	9.2e-101
>prophage 154
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1983069	1990181	2090133		Agrobacterium_phage(20.0%)	8	NA	NA
WP_078208069.1|1983069_1983612_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	36.9	1.3e-15
WP_005596065.1|1983901_1984099_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005596075.1|1984163_1984517_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_005705736.1|1984575_1984845_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_005705752.1|1984976_1986566_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.6	8.7e-73
WP_005705650.1|1987030_1988779_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	30.1	4.8e-56
WP_005705799.1|1988944_1989598_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	36.3	2.0e-31
WP_005705661.1|1989599_1990181_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	38.5	3.1e-28
>prophage 155
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	1994179	1998551	2090133		Leptospira_phage(50.0%)	2	NA	NA
WP_005705647.1|1994179_1997299_+	MMPL family transporter	NA	S5VTK5	Leptospira_phage	21.4	5.9e-49
WP_005705854.1|1997513_1998551_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.3	3.4e-33
>prophage 156
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2005543	2007784	2090133		Bacillus_virus(100.0%)	1	NA	NA
WP_005705668.1|2005543_2007784_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	34.2	8.2e-85
>prophage 157
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2011422	2019357	2090133	tRNA	Chrysochromulina_ericina_virus(16.67%)	7	NA	NA
WP_005705743.1|2011422_2013222_+	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	32.1	1.5e-52
WP_005705828.1|2013300_2013834_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	A0A0B5J096	Pandoravirus	38.6	4.4e-05
WP_005705791.1|2013835_2014651_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	S4TT53	Salmonella_phage	46.5	1.3e-08
WP_005705596.1|2014960_2015170_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_005705802.1|2015198_2015744_-	single-stranded DNA-binding protein	NA	I3PUY5	Vibrio_phage	53.8	1.3e-39
WP_005705678.1|2015892_2018721_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.4	2.4e-307
WP_005705612.1|2018775_2019357_-	thymidine kinase	NA	A0A0B6VTU8	Edwardsiella_phage	53.1	3.0e-55
>prophage 158
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2023008	2024052	2090133		Bacillus_virus(100.0%)	1	NA	NA
WP_005705795.1|2023008_2024052_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	38.1	1.2e-30
>prophage 159
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2027938	2041188	2090133	integrase	Mannheimia_phage(55.56%)	18	2031577:2031592	2035628:2035643
WP_005705818.1|2027938_2029405_+	replicative DNA helicase	NA	O80281	Escherichia_phage	69.4	5.4e-170
WP_039863053.1|2029421_2029715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005705826.1|2029746_2031681_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.4	4.6e-36
2031577:2031592	attL	TTGCAAAATTTAGGTA	NA	NA	NA	NA
WP_005705740.1|2031786_2032116_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_005705769.1|2032414_2033413_+|integrase	site-specific integrase	integrase	A0A0M3LRG1	Mannheimia_phage	55.3	4.9e-98
WP_005705663.1|2033409_2033718_-	hypothetical protein	NA	A0A0M3LQ35	Mannheimia_phage	39.1	3.8e-09
WP_039863003.1|2033763_2033958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705665.1|2033947_2034271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705653.1|2034625_2035468_-	hypothetical protein	NA	A0A0M3LR56	Mannheimia_phage	64.2	3.4e-52
WP_039863001.1|2035780_2035990_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
2035628:2035643	attR	TTGCAAAATTTAGGTA	NA	NA	NA	NA
WP_039863000.1|2035986_2036883_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.4	2.9e-49
WP_005705804.1|2037350_2037602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705824.1|2037750_2038137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039862998.1|2038137_2038809_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	75.5	7.6e-95
WP_005705620.1|2038780_2039722_-	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	76.8	5.8e-125
WP_143413713.1|2039819_2040050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705718.1|2040293_2040440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705776.1|2040555_2041188_-	hypothetical protein	NA	Q7Y5X0	Haemophilus_phage	49.2	2.5e-47
>prophage 160
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2045594	2073938	2090133	tail,transposase,capsid,terminase	Mannheimia_phage(64.52%)	49	NA	NA
WP_005705604.1|2045594_2046251_-	helix-turn-helix domain-containing protein	NA	A0A2H4J2S9	uncultured_Caudovirales_phage	26.3	8.7e-11
WP_005705808.1|2046369_2046555_+	hypothetical protein	NA	A0A1W6JP24	Morganella_phage	46.6	4.3e-08
WP_050855299.1|2046628_2047369_+	antirepressor	NA	A0A2I7RNT8	Vibrio_phage	67.9	2.7e-29
WP_005705855.1|2047365_2048145_+	helix-turn-helix domain-containing protein	NA	A0A0P0ZC04	Stx2-converting_phage	44.9	7.9e-35
WP_005705766.1|2048141_2048984_+	ATP-binding protein	NA	K7PLU3	Enterobacteria_phage	46.7	1.7e-67
WP_005705767.1|2048983_2049436_+	DUF1367 family protein	NA	A0A0M3LR84	Mannheimia_phage	65.1	6.8e-55
WP_005705858.1|2049464_2050097_-	hypothetical protein	NA	A6XMM0	Bacillus_virus	55.0	3.7e-27
WP_005705755.1|2050398_2050728_-	HigA family addiction module antidote protein	NA	A0A222YWD7	Escherichia_phage	54.5	1.6e-26
WP_005705597.1|2050737_2051043_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	54.9	6.2e-20
WP_005705607.1|2051140_2051575_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_100208013.1|2051634_2051808_-	mRNA interferase	NA	NA	NA	NA	NA
WP_005705635.1|2051908_2052073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005705657.1|2052065_2052644_+	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	67.2	8.3e-66
WP_005705737.1|2052636_2053026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039862994.1|2053158_2053413_+	hypothetical protein	NA	A0A0M3LR95	Mannheimia_phage	63.3	3.9e-20
WP_005705704.1|2053399_2053954_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.3	4.6e-45
WP_005705840.1|2053926_2054268_+	DUF2570 family protein	NA	NA	NA	NA	NA
WP_005705748.1|2054780_2055038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039862992.1|2055039_2055276_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005705606.1|2055263_2055659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005705763.1|2055802_2056234_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005705660.1|2056226_2056631_+	hypothetical protein	NA	A0A2I7RQ75	Vibrio_phage	54.4	3.1e-27
WP_039862991.1|2056590_2057862_+|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.5	3.0e-132
WP_005705700.1|2057871_2059260_+	DUF4055 domain-containing protein	NA	A0A0M3LQA1	Mannheimia_phage	67.0	2.7e-171
WP_005705860.1|2059225_2060620_+|capsid	minor capsid protein	capsid	A0A0M3LQ07	Mannheimia_phage	57.2	9.2e-127
WP_005705602.1|2060604_2060964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863046.1|2061296_2061872_+	hypothetical protein	NA	A0A0M3LQ07	Mannheimia_phage	58.7	8.6e-55
WP_005705827.1|2061871_2062090_+	hypothetical protein	NA	A0A0M3LPI7	Mannheimia_phage	77.8	1.4e-26
WP_005705703.1|2062089_2062509_+	HD domain-containing protein	NA	A0A0M3LQS1	Mannheimia_phage	59.4	4.5e-37
WP_039863043.1|2062612_2063347_+	hypothetical protein	NA	A0A0M3LQV7	Mannheimia_phage	77.9	1.4e-94
WP_005705714.1|2063412_2064363_+	hypothetical protein	NA	A0A0M3LQL5	Mannheimia_phage	76.3	3.4e-133
WP_005705846.1|2064447_2064594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005705789.1|2064608_2065046_+	hypothetical protein	NA	A0A0M3LSP7	Mannheimia_phage	65.3	2.9e-47
WP_005705651.1|2065045_2065405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005705727.1|2065802_2066201_+	hypothetical protein	NA	A0A0M3LQB6	Mannheimia_phage	50.0	1.7e-33
WP_005705634.1|2066203_2067217_+	hypothetical protein	NA	A0A0M3LQ19	Mannheimia_phage	74.8	1.3e-141
WP_005705631.1|2067270_2067672_+	hypothetical protein	NA	A0A0M3LPJ3	Mannheimia_phage	53.4	1.5e-34
WP_039862990.1|2067680_2068013_+	hypothetical protein	NA	A0A0M3LQT0	Mannheimia_phage	58.7	5.2e-28
WP_005705626.1|2068012_2068339_+|tail	phage tail protein	tail	A0A0M3LQW6	Mannheimia_phage	43.9	2.2e-23
WP_005705787.1|2068335_2069049_+|tail	phage minor tail protein L	tail	A0A0M3LPJ6	Mannheimia_phage	59.7	8.7e-81
WP_005705685.1|2069169_2069400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005705809.1|2069400_2070159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039863041.1|2070217_2070961_+	C40 family peptidase	NA	A0A0M3LP75	Mannheimia_phage	59.3	6.9e-81
WP_039863038.1|2070957_2071257_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005705805.1|2071267_2071627_-	toxin RelE	NA	NA	NA	NA	NA
WP_005705652.1|2071715_2072282_+|tail	tail assembly protein	tail	A0A0M3LPS1	Mannheimia_phage	61.9	2.9e-55
WP_005705669.1|2072324_2072540_-	antitoxin	NA	NA	NA	NA	NA
WP_005705812.1|2072536_2072827_-	BrnT family toxin	NA	NA	NA	NA	NA
WP_078208072.1|2073179_2073938_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	45.3	2.6e-51
>prophage 161
NZ_CP038817	Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome	2090133	2080053	2084796	2090133		Vibrio_phage(50.0%)	3	NA	NA
WP_005706381.1|2080053_2081718_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	25.8	6.2e-05
WP_005706374.1|2081727_2082519_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_005706380.1|2082528_2084796_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	41.4	5.1e-10
