The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	4902	63620	4126010	tRNA,protease,transposase	Klosneuvirus(30.0%)	56	NA	NA
WP_005012067.1|4902_5853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|6825_7185_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|7172_8609_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|8605_9259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|9255_10455_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|10552_11827_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|11823_12774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|12940_13915_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|13911_14055_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|15676_16339_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|16341_16518_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|16514_17453_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|17544_19035_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|19120_19273_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|19286_19526_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|19621_20365_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|20373_20898_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|20996_21920_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|21916_22678_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|22693_23779_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_076879573.1|23791_23992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149192982.1|23978_24929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|24888_25302_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|25586_25886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|26295_28464_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_010930784.1|29263_31294_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|31313_31526_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|31803_32343_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|32456_33764_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|33828_34986_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|35169_36069_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|36087_37392_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|37357_38464_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|38551_38788_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|38926_39997_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|40000_41356_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|41382_42543_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|42545_43184_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|43185_44490_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|44530_45826_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|45832_46339_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|46335_47484_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|47511_47937_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|48259_51142_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|51234_51990_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|52755_54105_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|54203_55154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|55252_56203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|56276_56750_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|56775_57984_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|57980_58754_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|58753_59377_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|59542_59803_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|60106_60688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|60754_61009_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|60995_63620_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 2
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	91403	147687	4126010	protease,transposase	Lake_Baikal_phage(25.0%)	51	NA	NA
WP_010929577.1|91403_92354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|92554_93364_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|93488_94439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|94435_95329_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|95453_95648_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|95647_95989_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|95998_97861_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|97990_98503_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|98505_98829_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|98830_99241_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|99278_100490_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|100507_101020_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|101235_101727_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|101979_104016_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|104093_105296_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|105346_106075_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|107632_108583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|109153_109366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|109383_110115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|110149_110791_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|110783_111500_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|113664_114441_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|114462_115620_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|115616_116048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|116044_116848_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|116861_117317_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|117329_118301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|118366_119590_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|119817_120768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|120891_123345_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|123533_124838_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|124942_125596_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|125598_126909_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|127087_127666_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|127777_127978_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|128323_128890_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|128973_129177_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|129483_129804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|129845_130127_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|130201_131458_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|131840_132170_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|133739_134561_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|134560_135700_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|135706_136603_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|136599_138525_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|138884_141497_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|141549_143850_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|143846_145055_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|145316_145691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930179.1|145687_146638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|146736_147687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	157049	217949	4126010	tRNA,transposase	uncultured_Mediterranean_phage(14.29%)	56	NA	NA
WP_005012808.1|157049_158000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879558.1|157986_158166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566334.1|158110_158551_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|158679_159909_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|159947_160769_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|160822_161974_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|162065_162554_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_010930534.1|165080_167654_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|167724_170298_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|170563_170764_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|170795_170957_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|171014_171353_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|171501_172452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274081.1|172550_173270_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_029443816.1|173346_173895_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|173876_175892_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_004568486.1|176074_176824_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|176836_177700_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|177703_179119_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|179252_179981_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|180119_180320_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|180495_180894_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|180917_182318_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|182436_183189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|183477_184155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|184181_184961_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|184957_185842_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_077274094.1|185859_186549_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_010930526.1|186623_187382_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|187507_188155_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|188422_189439_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|189536_190577_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|190711_192004_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|193363_193747_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|193764_194352_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|194389_195340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|196324_197098_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|197094_198093_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|198177_198954_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|199109_200777_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|201094_202219_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|202345_202969_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|202965_204867_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|204915_205710_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|205722_206724_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|206720_207227_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|207219_208068_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|208165_208708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|208751_209702_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|209857_210184_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|210180_210465_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|210461_210941_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|210937_212566_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|212562_212907_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|212906_215840_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|216998_217949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	247558	318711	4126010	transposase	Tetraselmis_virus(10.0%)	53	NA	NA
WP_010929591.1|247558_248509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|249061_250687_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|250736_251771_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|251773_253120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|253116_254631_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_124740716.1|254621_256109_-	DUF4381 family protein	NA	NA	NA	NA	NA
WP_010930479.1|256105_257047_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|257055_258024_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|259563_260532_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|260709_261699_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|261745_262504_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|262693_263431_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|263529_264480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|264664_265447_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|265440_266142_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|266381_266984_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|268310_269261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|269257_270814_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|270806_271580_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|271638_272589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|272670_273846_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|273859_275917_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|275913_276939_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|276950_278240_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|278262_279360_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|279356_280247_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|280243_282328_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|282359_283529_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|283570_284311_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|284310_285081_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|285936_286722_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|286748_288833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811209.1|291278_291779_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|291877_293404_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|293541_294429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|294443_295397_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|295448_297539_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|297554_297941_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|300634_301438_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|302731_303634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|303698_304475_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|304796_305846_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|305969_307640_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|307644_308439_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|308537_309488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|309507_310413_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|310490_311189_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|311348_312293_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|312302_313793_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|313789_314857_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|314920_316333_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|316518_317739_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|317760_318711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	414538	478709	4126010	tRNA,transposase	Planktothrix_phage(28.57%)	56	NA	NA
WP_003812608.1|414538_416488_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|416875_417652_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|417657_418050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|418471_419422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|419418_420516_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|420547_421498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|423274_424516_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|424527_425301_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|425327_426278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|426757_427414_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_149192983.1|427428_429096_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|429098_429728_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|429939_431034_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|431178_431991_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|431994_433698_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|433748_434879_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|435065_436142_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|436223_436874_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|436888_438322_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|438575_439394_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|439390_440095_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|440994_442110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|442143_442518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|442540_443698_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|443710_443944_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|444578_447548_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|447562_447772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930374.1|447923_448553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|448549_450667_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|450663_451344_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|451340_451901_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|451907_453005_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|453142_453751_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|453747_455040_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|455053_455596_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|455605_456442_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|456475_457537_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|457578_458631_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|458646_458949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|459090_460041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|460219_461914_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|461910_462996_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|463043_463943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|463953_464598_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|465619_468862_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|468872_469970_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|470232_471216_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930363.1|471314_472265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|472274_472964_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|473023_473461_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|473506_474400_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|474447_475620_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|475616_476771_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|476967_477318_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|477307_477742_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|477758_478709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	524802	591302	4126010	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|524802_525753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|526122_526695_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|526697_527708_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|527700_528201_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|528211_528553_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|528564_529356_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|529372_529642_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|529664_530453_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|530499_531516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|531732_533175_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|533353_534973_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|535093_536914_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|536992_538525_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|538558_540205_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|540274_541297_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|541314_542448_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|542450_543140_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|543139_543925_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|543968_544733_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|544771_546193_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|546258_546963_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|547010_547430_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|547442_547850_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|548033_548744_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|548870_549161_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|549178_549661_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|554166_555321_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|555626_556643_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|556889_557678_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|557744_558425_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|558421_559192_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|559290_560241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|560296_561214_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|561224_562403_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|562422_563418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|565006_565615_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|565602_566643_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|566660_567623_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|567619_568813_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|568809_569607_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|569632_570619_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|570637_572677_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|572878_573559_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|573572_574484_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|574480_575059_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|575197_576103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|576110_579530_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|579517_582118_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|583073_583706_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|584099_584858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|584854_586057_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|586244_587195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|588102_589248_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|589267_589990_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|590106_590286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|590351_591302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	753867	889319	4126010	tRNA,holin,transposase	Bacillus_phage(14.29%)	108	NA	NA
WP_005012067.1|753867_754818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|754916_755867_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|755884_756073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|756069_757059_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|757142_757496_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|757573_758182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|759855_760434_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|760458_761412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|761451_762369_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|762490_763417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|763424_764171_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|764497_765439_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003811651.1|765514_765637_-	membrane protein	NA	NA	NA	NA	NA
WP_010930224.1|765665_767363_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|767797_769219_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|769372_770152_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930221.1|770276_771149_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|771260_772385_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|772430_773393_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|773385_774240_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|774347_774758_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|774754_775705_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|775803_776754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|776852_777734_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|777811_779191_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|779229_780075_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|780090_780435_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|780437_780974_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|781146_781722_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|781824_782562_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|782629_784267_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|784374_785130_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|785117_786080_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|786181_786982_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|787043_789119_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|789283_791659_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|791739_793095_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|794573_795296_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|795350_796334_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|796463_797414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|797410_798313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|798400_799159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|799171_800320_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|800360_801788_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|802017_803232_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|803277_806148_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|808558_809047_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|809172_811869_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|812023_814306_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|814469_815102_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|815200_816151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|816249_817200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|817246_817801_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|817868_818714_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|818783_819752_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|819751_821548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|823447_827374_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930195.1|827664_827841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930194.1|828109_831340_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|831621_832449_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|832482_833178_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|833170_834451_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|834460_835438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|835419_837120_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|837222_838326_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|838356_839112_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|839118_840639_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|840681_840984_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|840980_841613_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|841691_843557_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|843553_844369_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|844376_845492_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|846396_847275_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|847274_848099_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|848266_849217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|849399_852279_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|852260_853037_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930181.1|853129_854593_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|854589_854961_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|854978_856292_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|856328_856787_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|856899_857850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|857948_858899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|858895_859909_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|860048_861035_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|861078_861879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|862681_863632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|863783_864386_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|864404_865037_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|865274_867161_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|867179_868022_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|868018_869377_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|869597_870392_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|870622_872116_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|872351_874433_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|874627_875668_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|875802_876819_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|876840_877698_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|877742_878519_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|878886_879837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|879863_880328_-	barstar family protein	NA	NA	NA	NA	NA
WP_149192985.1|881534_883823_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|883939_884812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|884854_886009_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|886043_886874_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|886957_888502_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|888544_888904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|888905_889319_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 8
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	895294	950386	4126010	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_010930525.1|895294_896311_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|896646_897288_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|897378_898815_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|898972_900046_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|900042_901179_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|901323_901668_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|901734_903615_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|903664_904600_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|904932_905949_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|906886_908314_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|908310_909333_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|909322_909796_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|909921_910824_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|910820_912464_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|912460_913468_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930153.1|914298_915315_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|915414_916047_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|916055_916445_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|916497_917550_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|918413_920120_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|920193_920694_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|920708_922766_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|922792_923086_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|923187_924135_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|924147_925023_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|925143_925704_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|925738_926062_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|926497_927235_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|927533_928484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|928727_928991_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|929064_929346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|929362_930223_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|930219_930555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|930608_931259_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|932939_933884_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|933929_934247_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|934249_935188_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|935365_935851_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|935869_936418_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023853531.1|936694_937828_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|937865_938573_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|938727_941076_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|941072_942011_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|942036_943227_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|943223_943997_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|944026_945220_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|945337_946348_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|946365_948402_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|948596_949337_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|949435_950386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	974190	1036387	4126010	transposase	Bacillus_virus(15.38%)	55	NA	NA
WP_010929632.1|974190_975207_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|975344_976394_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|976498_977449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|977544_978270_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|978480_978861_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|979166_980039_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|980046_980427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|980580_981855_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|983342_984251_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|985048_986113_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|987949_988984_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|989173_989815_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|989897_991724_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|991967_992897_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|992896_993646_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|993717_994632_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|994651_995797_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|995857_996769_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|996849_997800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|997898_998483_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|998517_999507_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|999503_1000445_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|1000441_1001662_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|1001704_1002019_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|1002210_1002570_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|1002571_1004302_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|1004474_1005146_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|1005160_1006489_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|1006485_1007385_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|1007471_1008557_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|1008549_1009683_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|1009682_1012364_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|1012734_1013316_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|1013393_1014167_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|1014163_1014841_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|1015056_1016238_+	MFS transporter	NA	NA	NA	NA	NA
WP_100208328.1|1016714_1016972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930090.1|1017010_1017193_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|1017222_1018173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|1018302_1018695_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|1018971_1019883_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|1020007_1020982_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1020978_1021929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|1022027_1023113_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|1023210_1023621_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|1024236_1026150_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|1026285_1028898_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|1028899_1029634_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|1029797_1030979_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|1030975_1031188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|1031184_1032165_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|1032210_1033038_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|1033184_1035002_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|1035056_1035440_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1035436_1036387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1154469	1218570	4126010	transposase	Klosneuvirus(16.67%)	52	NA	NA
WP_010930048.1|1154469_1155420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|1155416_1156436_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|1156445_1159154_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|1159301_1159958_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_014486111.1|1160056_1161007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|1161112_1162048_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|1162247_1163942_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|1163976_1164903_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|1164971_1166069_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|1166087_1166951_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|1166962_1167745_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|1167741_1168860_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|1168856_1170389_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|1170429_1171437_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|1171581_1172304_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|1172319_1173342_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|1173658_1174393_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|1174477_1176223_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|1176219_1176972_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|1177016_1177973_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|1178061_1178628_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|1178635_1179496_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|1179525_1180269_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|1180285_1180969_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|1181806_1182721_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1182785_1183736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929999.1|1183834_1184743_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|1184833_1186258_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|1186259_1187582_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|1187578_1189717_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|1189794_1194915_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_019248053.1|1195101_1195281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|1195393_1195951_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|1195966_1197448_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|1197502_1199356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|1199618_1200956_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|1200990_1202988_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|1203005_1205054_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|1205184_1206051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|1206319_1207285_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|1207399_1208548_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|1208972_1209284_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|1209317_1209578_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|1209727_1210861_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|1210931_1212068_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|1212233_1213028_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|1213090_1213534_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1213649_1214600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|1214586_1214775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|1214722_1215130_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|1215202_1217398_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1217619_1218570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1223570	1333081	4126010	tRNA,terminase,protease,tail,transposase	uncultured_Caudovirales_phage(13.79%)	114	NA	NA
WP_010929591.1|1223570_1224521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1224619_1225570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|1225727_1226993_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|1227026_1228124_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|1228778_1229729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|1229729_1230299_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|1230366_1231182_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|1231348_1232968_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|1233046_1233988_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|1233987_1234872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|1234875_1236528_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|1236567_1237965_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|1238006_1239386_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|1239425_1239644_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|1239984_1240857_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|1241016_1241967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|1242698_1243076_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|1243060_1243762_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|1243905_1244598_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|1244597_1245701_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|1245810_1248183_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|1248179_1249739_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|1249763_1250561_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|1250592_1251738_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|1251842_1253285_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|1253287_1254376_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|1256654_1257605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|1257591_1257810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|1258734_1259292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|1259267_1259618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|1259786_1260581_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|1260577_1261627_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|1261626_1262316_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|1262402_1262900_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|1262931_1264248_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|1264264_1265239_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|1265275_1265734_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|1265733_1266414_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|1266416_1266845_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|1266897_1268628_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|1268693_1269266_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|1269246_1269933_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|1270288_1270960_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_019247783.1|1270966_1271167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|1271509_1271791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|1271787_1272321_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|1272302_1272854_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|1272832_1273075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|1273079_1273892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|1273891_1274155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|1274195_1274393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|1274373_1274790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149192986.1|1274794_1278751_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	2.3e-215
WP_010931430.1|1278743_1279133_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|1279129_1279663_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|1279730_1280090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|1280099_1282712_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|1282737_1283028_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|1283045_1283375_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|1283384_1283903_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|1284157_1284658_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|1284665_1285088_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|1285084_1285483_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|1285479_1285875_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|1285874_1286075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|1286076_1286559_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|1286621_1286873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|1286882_1287530_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|1287547_1288498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|1289975_1290578_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|1290700_1290943_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|1290948_1292004_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|1292032_1293451_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|1293453_1294731_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|1294717_1295167_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|1295842_1296793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|1296810_1297032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|1297046_1297745_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|1297737_1298058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|1298537_1299149_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|1299214_1299427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1299678_1300629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|1300727_1301801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|1301968_1302763_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|1302802_1303327_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|1303319_1305062_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|1305271_1306030_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|1306032_1306740_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|1306756_1307638_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|1307648_1308407_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|1308375_1309131_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|1309200_1310619_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|1310640_1311291_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|1311424_1311760_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|1311848_1312799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|1312875_1314696_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|1314700_1315774_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|1315896_1316865_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|1316938_1317850_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|1317868_1318441_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|1318521_1319070_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|1319069_1320659_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|1320728_1320968_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|1321008_1322040_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|1322099_1323281_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|1323377_1323830_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|1323839_1325180_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|1325496_1326534_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|1326915_1327275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931401.1|1327358_1328309_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|1328569_1329664_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|1329745_1330627_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|1330648_1331488_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|1331563_1333081_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 12
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1500747	1563434	4126010	transposase	Lake_Baikal_phage(14.29%)	54	NA	NA
WP_005012067.1|1500747_1501698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|1501814_1502882_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|1502957_1506086_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|1506593_1507559_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|1507561_1508233_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|1508389_1509349_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|1509356_1510019_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|1510015_1510966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995938.1|1510952_1511144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929806.1|1511087_1512341_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|1512318_1513281_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077274093.1|1513433_1513907_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|1513906_1515139_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|1515884_1516166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|1516152_1517139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|1517282_1517687_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|1517828_1521215_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|1521245_1522709_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929798.1|1522705_1524346_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029443819.1|1524455_1525091_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|1525120_1525561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|1526071_1526275_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|1526450_1527356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1527454_1528405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|1530186_1531380_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|1531445_1532474_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|1532500_1533673_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|1533798_1534776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|1534786_1535758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|1535824_1536610_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|1536602_1537835_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|1538030_1538786_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|1538896_1539415_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|1541203_1542604_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|1542703_1543048_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|1543136_1543607_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|1544017_1544416_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_077069038.1|1544547_1545498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|1547942_1548677_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|1549086_1549266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|1549456_1550770_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|1550785_1552297_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|1552293_1553499_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|1553694_1554672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|1554764_1555259_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|1555388_1556447_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|1556443_1558063_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_077274092.1|1558022_1558331_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|1558250_1559354_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|1559350_1559806_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|1559811_1560735_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|1560824_1561484_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|1561480_1562395_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|1562483_1563434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1644485	1760155	4126010	tRNA,protease,transposase	Bacillus_phage(12.5%)	102	NA	NA
WP_005013747.1|1644485_1645436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|1645558_1646287_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|1646293_1647562_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|1647558_1648392_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|1648428_1649169_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|1649288_1650464_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|1650460_1651414_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|1651427_1651829_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|1651821_1652499_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|1652514_1652679_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|1652795_1653644_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|1653640_1654294_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|1654310_1655594_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|1655833_1657459_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|1657552_1657954_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|1657978_1658413_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|1658414_1660064_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|1660104_1661274_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|1661276_1662140_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|1665503_1666208_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|1666201_1666996_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|1666992_1667958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|1667961_1668882_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|1668978_1670142_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|1670364_1671255_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|1671258_1671762_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|1671804_1672803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041337087.1|1672799_1673750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|1673838_1674126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1674317_1675268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|1675327_1675888_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|1677390_1678272_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|1678385_1679588_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|1679716_1681576_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|1681653_1682463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|1682533_1683535_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|1683566_1684427_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|1684626_1685631_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|1685627_1687214_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|1687222_1688149_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|1688171_1688798_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|1688896_1689847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|1689843_1690980_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|1691033_1691810_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|1691834_1692293_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|1692432_1693074_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|1693138_1694521_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|1694540_1695395_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|1695553_1696165_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|1696174_1696624_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|1697142_1697283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|1697290_1697452_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_076879590.1|1697527_1697743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1697729_1698680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|1699723_1700002_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|1701144_1701720_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|1701755_1703435_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|1703431_1705183_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|1705179_1705305_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|1705318_1706473_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|1706488_1708108_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|1708191_1708737_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1709296_1710247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|1710977_1711958_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|1711971_1713096_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|1713103_1714858_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|1714964_1715864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|1715928_1716912_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|1717047_1718028_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|1718044_1719436_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|1719587_1720124_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|1720054_1721440_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|1721582_1722221_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|1722307_1724197_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|1724193_1725135_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|1725240_1726290_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|1726542_1727244_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|1727240_1727939_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|1727939_1729295_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|1729291_1729783_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|1729801_1730758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|1732168_1734271_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|1734441_1735485_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|1735528_1736272_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|1737293_1737704_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|1738653_1739451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|1739549_1740500_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1740496_1741447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1741533_1742484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|1742598_1743600_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|1743690_1744257_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|1744575_1746489_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|1746530_1747961_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|1748073_1749486_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|1749502_1750198_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127013037.1|1750229_1750430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1750416_1751367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|1751391_1752291_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|1752445_1752994_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|1753032_1753752_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|1753823_1756766_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|1757359_1760155_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 14
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1800568	1868390	4126010	tRNA,transposase	Bacillus_phage(22.22%)	59	NA	NA
WP_005012067.1|1800568_1801519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|1801505_1801685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|1801725_1802202_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|1802283_1802967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|1802991_1804599_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|1804647_1805277_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|1805310_1806693_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|1807023_1807653_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|1807630_1808533_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|1809976_1810927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|1811485_1813048_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|1813044_1813680_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|1813908_1814931_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|1815096_1815873_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|1816036_1816735_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|1816746_1818057_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|1818112_1818790_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|1818786_1820184_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|1820289_1820751_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|1820833_1822054_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|1822103_1822979_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|1823080_1823512_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|1823536_1824265_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|1824261_1825242_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|1826008_1826791_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|1826957_1827881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|1827952_1828711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|1828729_1829173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|1829193_1830006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|1830011_1830944_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|1830927_1832151_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|1832238_1833021_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|1833073_1837036_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|1837782_1839291_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_005012067.1|1839709_1840660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|1841926_1842805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|1842832_1843135_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|1843227_1844667_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|1844665_1845313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|1845739_1847440_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|1847530_1848784_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|1849677_1850067_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|1850063_1851074_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|1851910_1852744_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|1852740_1853646_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|1853744_1854695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|1854795_1855617_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|1855722_1856763_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|1856805_1858098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|1858108_1858984_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|1858980_1859781_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010929632.1|1859856_1860873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|1861155_1861473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|1861563_1861911_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|1862198_1863881_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|1863890_1864574_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|1864635_1865265_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|1865346_1866540_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|1867439_1868390_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	1896213	1932154	4126010	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|1896213_1897158_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1897232_1898183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|1898179_1899589_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|1899787_1900537_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|1900538_1900790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|1900878_1901460_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|1901491_1902112_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|1902273_1904181_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|1905373_1905688_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1905781_1906732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|1907153_1908335_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|1908964_1910236_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|1910270_1911329_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|1911432_1911750_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|1911762_1912344_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|1912538_1913375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|1913798_1914740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|1914923_1915343_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|1915342_1916569_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|1917369_1918320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_050858166.1|1918413_1919313_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|1919392_1920154_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|1920150_1920840_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|1920864_1921455_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|1921460_1922195_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|1923426_1924683_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|1924725_1925676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|1925811_1926426_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|1926422_1927670_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|1928839_1929733_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|1929860_1930097_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|1930068_1930704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1931203_1932154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	2238426	2312794	4126010	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_005012067.1|2238426_2239377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|2239373_2240564_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|2240685_2241450_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|2241536_2242640_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|2242831_2243848_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|2244129_2244618_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|2245961_2246642_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|2246703_2247555_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|2247551_2248427_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|2248452_2249346_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|2249357_2251247_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|2251583_2255357_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_041337087.1|2255353_2256304_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|2256612_2257305_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|2257678_2258179_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|2258285_2259206_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|2259222_2259699_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|2259792_2261643_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|2261698_2262457_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|2262484_2263957_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|2263991_2264771_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_149192988.1|2264783_2265641_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003815975.1|2265649_2266423_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|2266419_2267484_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|2267635_2270263_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|2270326_2272948_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|2273875_2274334_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|2274612_2276856_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|2277052_2279077_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|2279200_2280163_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|2280374_2281514_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|2281536_2282502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|2282697_2283888_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|2283901_2284147_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|2284175_2286197_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|2286243_2287851_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|2287951_2289121_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|2292002_2292953_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|2292976_2294035_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|2294109_2294484_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2295038_2295989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|2297545_2298391_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|2298478_2299642_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|2300060_2301032_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|2301070_2302498_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|2302617_2303409_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|2303527_2305981_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|2306075_2307191_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|2307187_2308597_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|2309002_2309137_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|2309232_2309604_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|2309600_2309873_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|2309921_2311613_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|2311843_2312794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	2495157	2612000	4126010	tRNA,transposase	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|2495157_2496108_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|2496830_2498105_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|2498191_2499274_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|2499284_2500097_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|2500133_2500460_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|2500464_2501025_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|2501265_2502258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|2502276_2503272_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|2503287_2504664_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|2504656_2507038_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|2507054_2507444_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|2507570_2507801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2507905_2508856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|2508954_2509905_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|2509901_2510774_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|2511704_2512991_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|2513044_2513971_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003815179.1|2513989_2514454_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|2515296_2516088_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|2516119_2516740_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|2516736_2517366_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|2517378_2517987_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|2517983_2518973_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|2519078_2520293_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_077108686.1|2522244_2523195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|2524628_2525915_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|2526080_2526389_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|2526389_2527055_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|2527095_2528886_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|2528998_2529859_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|2529855_2531061_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|2531057_2531942_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|2533458_2533893_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|2533855_2534854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|2534965_2536111_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|2536185_2537514_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|2537547_2538138_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|2538427_2539222_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|2540391_2541126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_076879643.1|2541132_2541960_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|2542006_2543782_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|2543824_2544322_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|2544618_2545569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|2545667_2546618_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|2546958_2547909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|2550232_2551381_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003817794.1|2551425_2552088_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|2552201_2553194_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|2553190_2553928_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|2554007_2554829_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|2554917_2555781_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|2555907_2556144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|2558118_2559153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|2559211_2560189_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_149192990.1|2560240_2561116_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852622.1|2561112_2562813_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|2562815_2563721_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|2563764_2564898_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|2565026_2565977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|2566075_2568145_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|2568187_2570290_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|2570596_2571673_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|2571748_2572633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|2572815_2573238_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|2573247_2574648_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|2574690_2575596_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|2575694_2577236_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|2577270_2577810_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|2577822_2578293_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|2578430_2578673_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|2578789_2579671_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|2579743_2580064_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|2580915_2581866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|2583189_2583966_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|2584000_2585773_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|2585774_2586677_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|2586801_2587161_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|2587192_2588155_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|2588253_2589204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|2589216_2590152_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|2590211_2591051_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|2591047_2592217_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|2592213_2593503_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|2593545_2593920_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|2594025_2594763_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|2594770_2595475_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|2595738_2597259_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|2597313_2597877_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|2597895_2598927_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|2598923_2599712_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_014905441.1|2599887_2600877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2602632_2603583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|2604805_2605708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|2605709_2606564_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|2606610_2607720_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|2607730_2608249_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|2608278_2608911_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|2608982_2609642_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|2609638_2610859_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|2611127_2612000_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 19
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	2616414	2680246	4126010	tRNA,transposase	Pandoravirus(12.5%)	50	NA	NA
WP_010931363.1|2616414_2617431_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|2617702_2618329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|2618384_2619512_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|2619517_2625235_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|2625518_2625734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|2625802_2626747_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|2626935_2627871_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|2627988_2629560_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|2629639_2630848_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|2631345_2632263_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|2634623_2634845_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|2635175_2636192_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|2636276_2636528_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|2636531_2637347_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|2637459_2638338_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|2638449_2640213_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|2640328_2641669_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931360.1|2641665_2642721_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010927010.1|2642737_2644162_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|2644161_2644863_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_005012067.1|2646367_2647318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|2647386_2648385_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|2648389_2649070_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|2649207_2649600_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|2649707_2650724_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|2650963_2651749_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|2651843_2653253_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|2653263_2654064_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|2654084_2654855_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|2654897_2655365_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|2655361_2656312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|2658260_2659139_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|2660065_2663044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|2662997_2663411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2663397_2664348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|2664344_2665433_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|2665468_2666332_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|2667471_2667861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|2667864_2668647_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|2668680_2669433_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|2669741_2670881_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|2670877_2671669_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|2671665_2672415_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|2672411_2673284_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|2673283_2674285_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|2674281_2675445_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|2675470_2676154_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|2676107_2677442_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|2677434_2678529_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|2679295_2680246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	2699157	2776466	4126010	tRNA,protease,integrase,transposase	Bacillus_phage(20.0%)	60	2746294:2746312	2766182:2766200
WP_010929956.1|2699157_2700108_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|2700206_2701682_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|2703269_2704157_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|2704159_2705101_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|2705146_2706712_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274099.1|2708489_2709773_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|2709997_2711455_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_010931329.1|2711418_2711922_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
WP_010931328.1|2711946_2712918_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|2712970_2713408_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|2713531_2714200_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|2714928_2716032_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|2716137_2717412_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|2717423_2718449_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|2718450_2719821_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|2719821_2720958_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|2721004_2722930_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|2722926_2724048_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|2724044_2725199_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|2725195_2726326_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|2726333_2727899_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|2727905_2729288_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|2729566_2730178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|2730269_2731685_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|2731702_2732413_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|2732409_2733732_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|2733811_2735773_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|2735898_2737212_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|2737320_2738619_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|2738801_2739710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|2739719_2739929_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|2739940_2741620_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|2741721_2742675_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|2742765_2743593_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|2743591_2745478_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|2745474_2746074_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|2746122_2747022_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
2746294:2746312	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274098.1|2747248_2748181_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
WP_029443719.1|2748303_2748918_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_029443720.1|2748995_2749643_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|2749639_2750422_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|2750494_2751586_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|2751865_2752993_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|2753334_2754381_+	Fic family protein	NA	NA	NA	NA	NA
WP_100208325.1|2754391_2754532_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_010931303.1|2754528_2757648_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|2757649_2760601_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|2760616_2761828_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|2761824_2762025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2762011_2762962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|2762978_2763473_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|2763476_2763734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247739.1|2763962_2764208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127063725.1|2764109_2765189_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|2765270_2765555_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|2766338_2767289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
2766182:2766200	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|2767707_2770272_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|2770316_2772170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|2772502_2774074_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2775515_2776466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	3031833	3124821	4126010	transposase	Bacillus_virus(27.27%)	87	NA	NA
WP_005012067.1|3031833_3032784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|3032886_3033549_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248131.1|3033651_3034062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|3034166_3035168_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|3035170_3036367_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|3036387_3037191_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|3037271_3037568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|3037598_3038162_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|3038202_3039060_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|3039067_3039817_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|3039838_3040711_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|3040739_3041519_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|3041552_3042350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|3043801_3044974_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|3045004_3045397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|3045390_3046251_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|3046254_3047217_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|3047993_3048683_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_014905696.1|3049543_3050494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|3050843_3051713_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|3051783_3052479_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|3052468_3052978_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|3052974_3054195_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|3054142_3055045_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|3055931_3057218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|3057256_3058630_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|3058668_3059370_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|3059668_3060658_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|3060758_3061220_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|3061235_3061784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|3061925_3063401_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|3063506_3064598_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|3064601_3065384_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|3065393_3066182_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|3067307_3067742_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|3067738_3068749_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|3068792_3069719_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|3070005_3070374_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|3070590_3071541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|3071585_3074012_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|3074060_3074753_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|3074825_3076025_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|3076042_3076948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|3077063_3077993_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|3078018_3079365_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|3079392_3080142_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|3080155_3080938_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|3081130_3082081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|3082142_3083288_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|3083764_3084601_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|3084670_3085636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930176.1|3085632_3086583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|3086569_3086776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|3086968_3087511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3088546_3089497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|3089738_3090107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|3090152_3091277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|3092411_3093152_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|3093255_3093876_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|3093979_3094930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|3094926_3097035_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|3097179_3097839_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|3097870_3098335_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|3098610_3098796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|3098847_3099600_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|3099606_3100869_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_077069115.1|3100910_3102149_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|3103226_3104354_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|3104364_3105192_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|3105178_3106045_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|3107411_3107816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|3108178_3109090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|3109104_3109815_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|3109811_3111056_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|3111057_3111492_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|3111520_3111826_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|3111719_3111938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3111924_3112875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3112931_3114080_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|3114160_3115111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|3115642_3116440_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|3116487_3117141_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|3117097_3118186_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|3118350_3120576_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|3122853_3123750_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|3123638_3123884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3123870_3124821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	3155207	3225129	4126010	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
WP_010929584.1|3155207_3156158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3156214_3157327_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|3159710_3160661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|3161251_3162028_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|3162145_3162409_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|3162509_3163514_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|3163714_3165316_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|3165341_3166100_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|3166191_3166848_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|3166938_3167703_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|3167712_3167901_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|3167956_3169000_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|3168996_3169410_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|3169406_3170027_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|3170307_3171258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|3171425_3172817_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|3172889_3173468_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|3173584_3174982_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|3175097_3176303_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|3176402_3176921_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|3177015_3177261_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|3177488_3177803_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|3177892_3183082_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|3183078_3185247_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|3185266_3187618_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|3187622_3188942_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|3188960_3190634_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|3190638_3191307_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|3191463_3195285_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|3195615_3196566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|3196587_3197733_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3197881_3198811_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|3198807_3199896_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|3199892_3200696_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|3200692_3201424_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|3201481_3202771_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|3202867_3203470_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|3208023_3208362_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|3209069_3209336_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|3211042_3211993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|3211989_3213321_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|3214560_3216582_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|3216574_3217216_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|3217212_3217620_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|3217616_3218417_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|3218491_3219196_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|3219227_3220022_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|3220018_3220969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|3221067_3221502_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|3221584_3223921_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|3224112_3225129_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	3325349	3380599	4126010	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|3325349_3326300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|3330046_3330658_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|3330880_3332341_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|3332437_3334030_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|3334016_3334295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|3334353_3334641_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|3334642_3335983_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|3336078_3336768_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|3336780_3338211_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|3339935_3340757_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|3340767_3342339_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|3342367_3343345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|3343371_3344175_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|3344171_3344966_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|3344973_3346209_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|3346201_3346636_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3347385_3348336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|3348957_3350685_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|3350796_3352155_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|3352275_3352461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3352447_3353398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|3353438_3354509_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|3354531_3355410_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|3355581_3356553_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|3356715_3357558_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|3357719_3358400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|3358393_3359563_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|3359559_3360591_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|3360634_3361876_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|3361910_3363443_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|3363523_3364147_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|3364177_3364789_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|3364824_3365295_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|3365484_3365718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|3365725_3366730_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|3366766_3368281_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|3368284_3369244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|3369272_3370076_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|3370077_3371712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|3371795_3372857_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|3373055_3373325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|3373328_3373853_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|3374268_3375219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|3375215_3376286_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|3376358_3376997_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|3377291_3377519_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|3377641_3378355_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|3378599_3379550_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930066.1|3379648_3380599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	3858287	3923490	4126010	tRNA,transposase	Tupanvirus(25.0%)	54	NA	NA
WP_010930630.1|3858287_3859748_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|3859767_3860412_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|3860448_3861414_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|3861512_3862463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|3862523_3863558_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003810012.1|3863630_3864923_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010930153.1|3865316_3866333_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|3866676_3867177_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|3867218_3867533_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|3867542_3868484_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|3868480_3869005_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|3869007_3870276_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|3870304_3871288_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|3871284_3872094_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|3872090_3872894_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|3872908_3873676_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|3873763_3874402_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|3874406_3875360_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|3875471_3876596_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|3878233_3879061_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|3879057_3879861_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|3879857_3880949_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|3881355_3882384_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|3882542_3883247_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|3883255_3885376_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_076879641.1|3885376_3886402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|3886401_3886794_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|3886797_3887274_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|3887287_3887623_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|3887629_3888079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820151.1|3888286_3888586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|3888638_3889751_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|3889755_3890394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|3890374_3891634_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|3891637_3893743_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|3893748_3895734_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|3895942_3896179_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|3896523_3897009_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3897376_3898327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3898425_3899376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930653.1|3899422_3900631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930654.1|3900722_3902672_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930655.1|3902668_3903445_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
WP_010930656.1|3903441_3904212_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
WP_010930657.1|3906655_3907177_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930658.1|3907253_3908405_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010929891.1|3908705_3909458_+	maleate isomerase	NA	NA	NA	NA	NA
WP_010929892.1|3910324_3911356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929893.1|3911371_3911989_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010930525.1|3912180_3913197_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_061363663.1|3915270_3916677_+	ferric reductase	NA	NA	NA	NA	NA
WP_010930660.1|3916687_3918796_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930661.1|3919550_3920516_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853569.1|3922221_3923490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP038790	Bordetella pertussis strain P2013109 chromosome, complete genome	4126010	4059070	4109668	4126010	transposase	Erysipelothrix_phage(33.33%)	47	NA	NA
WP_010930730.1|4059070_4060021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|4060891_4061764_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|4061841_4062981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|4063330_4064596_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|4064601_4065129_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|4065133_4065952_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|4065951_4066674_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|4066695_4067010_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|4067006_4068176_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|4068206_4069082_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|4069078_4070398_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|4070470_4071667_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|4071677_4073165_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|4075759_4076659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|4076796_4077762_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|4077860_4078811_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|4078854_4079046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|4079032_4079983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|4079979_4080282_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|4080441_4080846_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|4080838_4082065_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|4082061_4082508_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|4082577_4083360_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|4083401_4084907_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_047122807.1|4085192_4085987_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|4087463_4088285_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|4088303_4089158_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|4089161_4090133_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247854.1|4090207_4090846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247855.1|4090817_4090994_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|4091479_4092430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|4092528_4092825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|4092999_4094352_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|4094494_4095511_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|4097490_4098504_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|4098590_4099496_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|4099652_4099997_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|4100154_4100613_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|4100626_4102843_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|4102839_4103901_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|4103929_4104904_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|4104855_4105674_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|4105686_4106295_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|4106469_4106865_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|4106883_4108323_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|4108351_4108699_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|4108717_4109668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
