assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008329945.1_ASM832994v1	NZ_CP035807	Spirochaeta perfilievii strain P chromosome, complete genome	1	862948-863044	1	CRISPRCasFinder	no		RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	Orphan	GAATGGGTCAAGGCCTAAGAATGGG	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP035807.1_853858_854551_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|331aa|up_8|NZ_CP035807.1_854547_855540_-	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|648aa|up_7|NZ_CP035807.1_855672_857616_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|508aa|up_6|NZ_CP035807.1_857660_859184_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|230aa|up_5|NZ_CP035807.1_859176_859866_-	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|191aa|up_4|NZ_CP035807.1_859865_860438_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|167aa|up_3|NZ_CP035807.1_860527_861028_-	cd01048, Ferritin_like_AB2, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|279aa|up_2|NZ_CP035807.1_861099_861936_+	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain	NA|110aa|up_1|NZ_CP035807.1_862000_862330_+	COG1433, COG1433, Uncharacterized conserved protein [Function unknown]	NA|127aa|up_0|NZ_CP035807.1_862383_862764_+	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|120aa|down_0|NZ_CP035807.1_863062_863422_+	COG1433, COG1433, Uncharacterized conserved protein [Function unknown]	NA|279aa|down_1|NZ_CP035807.1_863423_864260_+	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	NA|285aa|down_2|NZ_CP035807.1_864249_865104_+	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI	NA|94aa|down_3|NZ_CP035807.1_865116_865398_+	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only]	NA|447aa|down_4|NZ_CP035807.1_865490_866831_+	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	NA|373aa|down_5|NZ_CP035807.1_866952_868071_+	pfam03595, SLAC1, Voltage-dependent anion channel	NA|257aa|down_6|NZ_CP035807.1_868120_868891_+	cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins	NA|326aa|down_7|NZ_CP035807.1_868987_869965_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|96aa|down_8|NZ_CP035807.1_870171_870459_-	smart00360, RRM, RNA recognition motif	NA|585aa|down_9|NZ_CP035807.1_871407_873162_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS
GCF_008329945.1_ASM832994v1	NZ_CP035807	Spirochaeta perfilievii strain P chromosome, complete genome	2	1189328-1189411	2	CRISPRCasFinder	no		RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	Orphan	TTCTTATTACCAACTCCCCATAA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	NA|186aa|up_6|NZ_CP035807.1_1182813_1183371_-,NA|466aa|up_5|NZ_CP035807.1_1183373_1184771_-,NA|95aa|up_4|NZ_CP035807.1_1185642_1185927_-,NA|326aa|up_3|NZ_CP035807.1_1186146_1187124_-,NA|147aa|up_2|NZ_CP035807.1_1187132_1187573_-,NA|325aa|down_0|NZ_CP035807.1_1190456_1191431_-,NA|1192aa|down_1|NZ_CP035807.1_1191420_1194996_-,NA|326aa|down_2|NZ_CP035807.1_1195242_1196220_-,NA|1419aa|down_5|NZ_CP035807.1_1197535_1201792_-,NA|5106aa|down_6|NZ_CP035807.1_1201791_1217109_-,NA|270aa|down_7|NZ_CP035807.1_1217156_1217966_-,NA|98aa|down_8|NZ_CP035807.1_1218401_1218695_+	NA|159aa|up_9|NZ_CP035807.1_1181168_1181645_+	pfam13565, HTH_32, Homeodomain-like domain	NA|84aa|up_8|NZ_CP035807.1_1181886_1182138_+	pfam13683, rve_3, Integrase core domain	NA|124aa|up_7|NZ_CP035807.1_1182403_1182775_-	COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]	NA|186aa|up_6|NZ_CP035807.1_1182813_1183371_-	NA	NA|466aa|up_5|NZ_CP035807.1_1183373_1184771_-	NA	NA|95aa|up_4|NZ_CP035807.1_1185642_1185927_-	NA	NA|326aa|up_3|NZ_CP035807.1_1186146_1187124_-	NA	NA|147aa|up_2|NZ_CP035807.1_1187132_1187573_-	NA	NA|93aa|up_1|NZ_CP035807.1_1187793_1188072_+	pfam01527, HTH_Tnp_1, Transposase	NA|276aa|up_0|NZ_CP035807.1_1188100_1188928_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|325aa|down_0|NZ_CP035807.1_1190456_1191431_-	NA	NA|1192aa|down_1|NZ_CP035807.1_1191420_1194996_-	NA	NA|326aa|down_2|NZ_CP035807.1_1195242_1196220_-	NA	NA|297aa|down_3|NZ_CP035807.1_1196315_1197206_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|92aa|down_4|NZ_CP035807.1_1197217_1197493_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1419aa|down_5|NZ_CP035807.1_1197535_1201792_-	NA	NA|5106aa|down_6|NZ_CP035807.1_1201791_1217109_-	NA	NA|270aa|down_7|NZ_CP035807.1_1217156_1217966_-	NA	NA|98aa|down_8|NZ_CP035807.1_1218401_1218695_+	NA	NA|116aa|down_9|NZ_CP035807.1_1218694_1219042_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein
GCF_008329945.1_ASM832994v1	NZ_CP035807	Spirochaeta perfilievii strain P chromosome, complete genome	3	1849620-1850249	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GCTTTAGTTCCATCTAAAATGACACACATCTAAAAC,GCTTTAGTTCCATCTAAAATGACACACATCTAAAAC,GCTTTAGTTCCATCTAAAATGACACACATCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	9,9,9	9	TypeII-C,TypeII-A,TypeII-B	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	NA|154aa|up_9|NZ_CP035807.1_1839970_1840432_-,NA|349aa|up_7|NZ_CP035807.1_1840679_1841726_+,NA|139aa|up_6|NZ_CP035807.1_1841769_1842186_-,NA|185aa|up_2|NZ_CP035807.1_1846394_1846949_-,NA	NA|154aa|up_9|NZ_CP035807.1_1839970_1840432_-	NA	NA|71aa|up_8|NZ_CP035807.1_1840495_1840708_+	pfam07308, DUF1456, Protein of unknown function (DUF1456)	NA|349aa|up_7|NZ_CP035807.1_1840679_1841726_+	NA	NA|139aa|up_6|NZ_CP035807.1_1841769_1842186_-	NA	NA|91aa|up_5|NZ_CP035807.1_1842179_1842452_-	PHA02542, 41, 41 helicase; Provisional	NA|564aa|up_4|NZ_CP035807.1_1842553_1844245_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|599aa|up_3|NZ_CP035807.1_1844327_1846124_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|185aa|up_2|NZ_CP035807.1_1846394_1846949_-	NA	NA|161aa|up_1|NZ_CP035807.1_1847013_1847496_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|575aa|up_0|NZ_CP035807.1_1847562_1849287_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|297aa|down_0|NZ_CP035807.1_1850335_1851226_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|93aa|down_1|NZ_CP035807.1_1851237_1851516_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	csn2|231aa|down_2|NZ_CP035807.1_1853772_1854465_-	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_3|NZ_CP035807.1_1854461_1854767_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|291aa|down_4|NZ_CP035807.1_1854778_1855651_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1300aa|down_5|NZ_CP035807.1_1855650_1859550_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|918aa|down_6|NZ_CP035807.1_1860123_1862877_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|149aa|down_7|NZ_CP035807.1_1862880_1863327_-	cd17906, CheX, chemotaxis phosphatase CheX	NA|122aa|down_8|NZ_CP035807.1_1863323_1863689_-	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|368aa|down_9|NZ_CP035807.1_1863866_1864970_+	cd19096, AKR_Fe-S_oxidoreductase, Fe-S oxidoreductase and similar proteins
GCF_008329945.1_ASM832994v1	NZ_CP035807	Spirochaeta perfilievii strain P chromosome, complete genome	4	1851587-1853734	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTAGTTCCATCTAAAATGACACACATCTAAAAC,GTTTTAGTTCCATCTAAAATGACACACATCTAAAAC,GTTTTAGTTCCATCTAAAATGACACACATCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	32,32,25	32	TypeII-C,TypeII-A,TypeII-B	RT,DinG,DEDDh,WYL,PD-DExK,csa3,cas3,PrimPol,csn2,cas2,cas1,cas9	NA|349aa|up_9|NZ_CP035807.1_1840679_1841726_+,NA|139aa|up_8|NZ_CP035807.1_1841769_1842186_-,NA|185aa|up_4|NZ_CP035807.1_1846394_1846949_-,NA	NA|349aa|up_9|NZ_CP035807.1_1840679_1841726_+	NA	NA|139aa|up_8|NZ_CP035807.1_1841769_1842186_-	NA	NA|91aa|up_7|NZ_CP035807.1_1842179_1842452_-	PHA02542, 41, 41 helicase; Provisional	NA|564aa|up_6|NZ_CP035807.1_1842553_1844245_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|599aa|up_5|NZ_CP035807.1_1844327_1846124_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|185aa|up_4|NZ_CP035807.1_1846394_1846949_-	NA	NA|161aa|up_3|NZ_CP035807.1_1847013_1847496_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|575aa|up_2|NZ_CP035807.1_1847562_1849287_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|297aa|up_1|NZ_CP035807.1_1850335_1851226_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|93aa|up_0|NZ_CP035807.1_1851237_1851516_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	csn2|231aa|down_0|NZ_CP035807.1_1853772_1854465_-	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP035807.1_1854461_1854767_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|291aa|down_2|NZ_CP035807.1_1854778_1855651_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1300aa|down_3|NZ_CP035807.1_1855650_1859550_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|918aa|down_4|NZ_CP035807.1_1860123_1862877_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|149aa|down_5|NZ_CP035807.1_1862880_1863327_-	cd17906, CheX, chemotaxis phosphatase CheX	NA|122aa|down_6|NZ_CP035807.1_1863323_1863689_-	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|368aa|down_7|NZ_CP035807.1_1863866_1864970_+	cd19096, AKR_Fe-S_oxidoreductase, Fe-S oxidoreductase and similar proteins	NA|612aa|down_8|NZ_CP035807.1_1865077_1866913_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|180aa|down_9|NZ_CP035807.1_1866899_1867439_-	pfam12724, Flavodoxin_5, Flavodoxin domain
