assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	1	432914-433014	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP031888.1_425520_425904_-,NA|98aa|up_6|NZ_CP031888.1_426857_427151_-,NA|34aa|up_1|NZ_CP031888.1_432138_432240_+,NA|86aa|up_0|NZ_CP031888.1_432447_432705_-,NA|221aa|down_1|NZ_CP031888.1_434104_434767_-,NA|179aa|down_7|NZ_CP031888.1_440858_441395_-	NA|194aa|up_9|NZ_CP031888.1_424873_425455_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP031888.1_425520_425904_-	NA	NA|209aa|up_7|NZ_CP031888.1_426158_426785_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP031888.1_426857_427151_-	NA	NA|508aa|up_5|NZ_CP031888.1_427229_428753_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP031888.1_428768_429338_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP031888.1_429829_430585_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP031888.1_430665_432054_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP031888.1_432138_432240_+	NA	NA|86aa|up_0|NZ_CP031888.1_432447_432705_-	NA	NA|319aa|down_0|NZ_CP031888.1_433030_433987_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP031888.1_434104_434767_-	NA	NA|136aa|down_2|NZ_CP031888.1_434909_435317_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP031888.1_435829_436408_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP031888.1_436407_437676_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP031888.1_437713_439180_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP031888.1_439204_440746_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP031888.1_440858_441395_-	NA	NA|235aa|down_8|NZ_CP031888.1_441787_442492_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP031888.1_442890_443163_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2	668043-668135	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP031888.1_664527_664635_+,NA|169aa|down_4|NZ_CP031888.1_671882_672389_+,NA|239aa|down_5|NZ_CP031888.1_672550_673267_+	NA|313aa|up_9|NZ_CP031888.1_658729_659668_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP031888.1_659878_660415_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP031888.1_660583_661060_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP031888.1_661099_662395_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP031888.1_662422_662944_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP031888.1_663442_664453_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP031888.1_664527_664635_+	NA	NA|128aa|up_2|NZ_CP031888.1_664760_665144_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP031888.1_665140_666802_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP031888.1_667189_667825_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP031888.1_668263_669091_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP031888.1_669238_670189_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP031888.1_670243_670963_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP031888.1_670946_671747_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP031888.1_671882_672389_+	NA	NA|239aa|down_5|NZ_CP031888.1_672550_673267_+	NA	NA|263aa|down_6|NZ_CP031888.1_673435_674224_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP031888.1_674474_674849_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP031888.1_676564_677101_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP031888.1_677081_677585_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3	843833-843918	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	843863-843888|843863-843888|843863-843888|843863-843888|843863-843888	NZ_CP031888.1_2823266-2823291|NZ_CP031888.1_2823322-2823347|NZ_CP031888.1_806825-806800|NZ_CP031888.1_806881-806856|NZ_CP031888.1_949971-949946	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP031888.1_831085_831925_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP031888.1_832098_832749_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP031888.1_832745_832982_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP031888.1_833250_835236_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP031888.1_835243_838090_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP031888.1_838751_839684_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP031888.1_839689_840529_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP031888.1_840536_841022_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP031888.1_841029_842469_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP031888.1_842535_843471_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP031888.1_844350_845262_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP031888.1_845258_846254_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP031888.1_846363_847308_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP031888.1_847881_848469_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP031888.1_848711_849614_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP031888.1_850315_850945_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP031888.1_851704_852718_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP031888.1_852770_853781_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP031888.1_853919_855110_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP031888.1_855231_855993_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	4	887162-887243	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	887186-887219|887186-887219	NZ_CP031888.1_1376178-1376145|NZ_CP031888.1_1465337-1465370	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP031888.1_886064_886178_+,NA	NA|206aa|up_9|NZ_CP031888.1_880919_881537_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP031888.1_881691_882186_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP031888.1_882584_883007_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP031888.1_883154_883871_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP031888.1_883953_884493_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP031888.1_884642_884963_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP031888.1_885106_885463_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP031888.1_885620_886001_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP031888.1_886064_886178_+	NA	NA|293aa|up_0|NZ_CP031888.1_886179_887058_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP031888.1_887799_888186_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP031888.1_888178_888475_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP031888.1_888724_889750_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP031888.1_889742_890438_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP031888.1_890455_891277_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP031888.1_891419_892640_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP031888.1_892727_893456_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP031888.1_893479_894208_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP031888.1_894224_894683_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP031888.1_894694_895027_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5	949972-950254	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	950002-950027|950002-950027|950002-950027|950002-950027|950116-950141|950116-950141	NZ_CP031888.1_949946-949971|NZ_CP031888.1_2823291-2823266|NZ_CP031888.1_2823347-2823322|NZ_CP031888.1_806800-806825|NZ_CP031888.1_843944-843919|NZ_CP031888.1_394247-394272	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP031888.1_938860_940357_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP031888.1_940349_940679_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP031888.1_940690_941119_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP031888.1_941111_943517_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP031888.1_943647_944031_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP031888.1_944094_944688_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP031888.1_945103_945481_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP031888.1_945842_946970_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP031888.1_947277_948468_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP031888.1_948576_949821_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP031888.1_950323_951253_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP031888.1_951494_952874_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP031888.1_952863_954069_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP031888.1_954419_955751_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP031888.1_956075_956651_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP031888.1_956655_957180_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP031888.1_957195_957771_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP031888.1_957930_961407_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP031888.1_961407_965061_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP031888.1_965226_966129_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	6	1083644-1083731	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP031888.1_1083520_1083640_+,NA|45aa|down_0|NZ_CP031888.1_1083740_1083875_-,NA|432aa|down_1|NZ_CP031888.1_1084026_1085322_+,NA|68aa|down_2|NZ_CP031888.1_1085342_1085546_-	NA|730aa|up_9|NZ_CP031888.1_1072098_1074288_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP031888.1_1074266_1075751_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP031888.1_1075743_1076772_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP031888.1_1076774_1077341_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP031888.1_1077355_1078834_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP031888.1_1078855_1080103_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP031888.1_1080367_1081174_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP031888.1_1081166_1082567_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP031888.1_1082581_1083157_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP031888.1_1083520_1083640_+	NA	NA|45aa|down_0|NZ_CP031888.1_1083740_1083875_-	NA	NA|432aa|down_1|NZ_CP031888.1_1084026_1085322_+	NA	NA|68aa|down_2|NZ_CP031888.1_1085342_1085546_-	NA	NA|391aa|down_3|NZ_CP031888.1_1085746_1086919_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP031888.1_1086972_1087515_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP031888.1_1087668_1087935_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP031888.1_1087937_1089656_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP031888.1_1089892_1090126_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP031888.1_1090323_1091685_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP031888.1_1091681_1092701_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7	2025319-2025397	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2025342-2025374|2025342-2025374|2025342-2025374|2025342-2025374|2025342-2025374|2025342-2025374	NZ_CP031888.1_843899-843931|NZ_CP031888.1_1690259-1690291|NZ_CP031888.1_2659953-2659985|NZ_CP031888.1_1168007-1167975|NZ_CP031888.1_1376132-1376100|NZ_CP031888.1_1465383-1465415	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP031888.1_2019513_2019789_+,NA|129aa|up_1|NZ_CP031888.1_2023774_2024161_-,NA|138aa|down_1|NZ_CP031888.1_2027080_2027494_-,NA|37aa|down_2|NZ_CP031888.1_2027522_2027633_-,NA|31aa|down_6|NZ_CP031888.1_2030638_2030731_-	NA|419aa|up_9|NZ_CP031888.1_2017436_2018693_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP031888.1_2018695_2018896_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP031888.1_2019042_2019507_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP031888.1_2019513_2019789_+	NA	NA|406aa|up_5|NZ_CP031888.1_2020066_2021284_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP031888.1_2021399_2022029_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP031888.1_2022018_2023062_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP031888.1_2023058_2023760_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP031888.1_2023774_2024161_-	NA	NA|253aa|up_0|NZ_CP031888.1_2024377_2025136_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP031888.1_2025663_2026650_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP031888.1_2027080_2027494_-	NA	NA|37aa|down_2|NZ_CP031888.1_2027522_2027633_-	NA	NA|244aa|down_3|NZ_CP031888.1_2027718_2028450_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP031888.1_2028451_2029765_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP031888.1_2030056_2030557_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP031888.1_2030638_2030731_-	NA	DEDDh|185aa|down_7|NZ_CP031888.1_2030945_2031500_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP031888.1_2031567_2032638_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP031888.1_2032884_2033415_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	8	2260075-2260225	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP031888.1_2254946_2255177_-,NA|364aa|up_0|NZ_CP031888.1_2258965_2260057_+,NA|35aa|down_0|NZ_CP031888.1_2260556_2260661_-,NA|31aa|down_2|NZ_CP031888.1_2262772_2262865_+	NA|237aa|up_9|NZ_CP031888.1_2250556_2251267_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP031888.1_2251387_2251831_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP031888.1_2252030_2252444_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP031888.1_2252901_2254275_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP031888.1_2254946_2255177_-	NA	NA|313aa|up_4|NZ_CP031888.1_2255207_2256146_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP031888.1_2256580_2257246_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP031888.1_2257397_2257718_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP031888.1_2257719_2258700_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP031888.1_2258965_2260057_+	NA	NA|35aa|down_0|NZ_CP031888.1_2260556_2260661_-	NA	NA|379aa|down_1|NZ_CP031888.1_2261347_2262484_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP031888.1_2262772_2262865_+	NA	NA|286aa|down_3|NZ_CP031888.1_2263569_2264427_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP031888.1_2264494_2265277_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP031888.1_2265508_2267314_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP031888.1_2267994_2269533_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP031888.1_2269567_2271700_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP031888.1_2271711_2272146_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP031888.1_2272145_2273252_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_008329865.1_ASM832986v1	NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9	2383993-2384186	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2384016-2384048|2384016-2384048|2384016-2384048|2384016-2384048|2384016-2384048|2384072-2384107|2384072-2384107|2384072-2384107|2384072-2384107|2384131-2384163|2384131-2384163|2384131-2384163|2384131-2384163	NZ_CP031888.1_843899-843931|NZ_CP031888.1_1465383-1465415|NZ_CP031888.1_2659953-2659985|NZ_CP031888.1_1168007-1167975|NZ_CP031888.1_1376132-1376100|NZ_CP031888.1_1167954-1167919|NZ_CP031888.1_1868756-1868721|NZ_CP031888.1_1690198-1690233|NZ_CP031888.1_2036086-2036121|NZ_CP031888.1_843899-843931|NZ_CP031888.1_2659953-2659985|NZ_CP031888.1_1168007-1167975|NZ_CP031888.1_1376132-1376100	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP031888.1_2374520_2374685_+,NA|106aa|up_8|NZ_CP031888.1_2374929_2375247_+,NA|84aa|up_5|NZ_CP031888.1_2380371_2380623_+,NA|57aa|up_0|NZ_CP031888.1_2383762_2383933_+,NA	NA|55aa|up_9|NZ_CP031888.1_2374520_2374685_+	NA	NA|106aa|up_8|NZ_CP031888.1_2374929_2375247_+	NA	NA|1056aa|up_7|NZ_CP031888.1_2375433_2378601_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP031888.1_2378717_2379983_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP031888.1_2380371_2380623_+	NA	NA|255aa|up_4|NZ_CP031888.1_2380614_2381379_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP031888.1_2381540_2381981_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP031888.1_2381973_2383185_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP031888.1_2383286_2383637_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP031888.1_2383762_2383933_+	NA	NA|341aa|down_0|NZ_CP031888.1_2384327_2385350_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP031888.1_2385369_2385969_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP031888.1_2385975_2386209_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP031888.1_2386214_2386661_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP031888.1_2386674_2387160_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP031888.1_2387156_2388416_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP031888.1_2388478_2388973_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP031888.1_2388974_2389481_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP031888.1_2389511_2390516_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP031888.1_2390685_2391291_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
