bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3.1|843863|26|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.154	26	1	0	1	26	2823266	2823291	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2823266-2823291	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3.1|843863|26|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.154	26	1	0	1	26	2823322	2823347	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2823322-2823347	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3.1|843863|26|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.154	26	1	0	1	26	806825	806800	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	806800-806825	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3.1|843863|26|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	806881	806856	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	806856-806881	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	3.1|843863|26|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	949971	949946	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	949946-949971	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	4.1|887186|34|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	100.000	34	0	0	1	34	1376178	1376145	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	4.63e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1376145-1376178	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	4.1|887186|34|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	100.000	34	0	0	1	34	1465337	1465370	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	4.63e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1465337-1465370	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.1|950002|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.154	26	1	0	1	26	949946	949971	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.37e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	949946-949971	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.1|950002|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	2823291	2823266	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2823266-2823291	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.1|950002|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	2823347	2823322	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2823322-2823347	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.1|950002|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	806800	806825	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	806800-806825	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.3|950116|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.154	26	1	0	1	26	843944	843919	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.37e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	843919-843944	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	5.3|950116|26|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	92.308	26	2	0	1	26	394247	394272	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394247-394272	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.970	33	1	0	1	33	843899	843931	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	843899-843931	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.970	33	1	0	1	33	1690259	1690291	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1690259-1690291	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.970	33	1	0	1	33	2659953	2659985	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2659953-2659985	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.970	33	1	0	1	33	1168007	1167975	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1167975-1168007	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	96.970	33	1	0	1	33	1376132	1376100	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1376100-1376132	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	7.1|2025342|33|NZ_CP031888|CRISPRCasFinder	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1465383	1465415	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1465383-1465415	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.1|2384016|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	843899	843931	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	843899-843931	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.1|2384016|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1465383	1465415	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1465383-1465415	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.1|2384016|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	2659953	2659985	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2659953-2659985	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.1|2384016|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1168007	1167975	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1167975-1168007	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.1|2384016|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1376132	1376100	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1376100-1376132	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.2|2384072|36|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	100.000	36	0	0	1	36	1167954	1167919	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	5.78e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1167919-1167954	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.2|2384072|36|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	97.222	36	1	0	1	36	1868756	1868721	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	5.20e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1868721-1868756	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.2|2384072|36|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	94.444	36	2	0	1	36	1690198	1690233	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	4.68e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1690198-1690233	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.2|2384072|36|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	94.444	36	2	0	1	36	2036086	2036121	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	4.68e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2036086-2036121	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.3|2384131|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	843899	843931	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	843899-843931	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.3|2384131|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	2659953	2659985	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2659953-2659985	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.3|2384131|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1168007	1167975	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1167975-1168007	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	9.3|2384131|33|NZ_CP031888|CRT	NZ_CP031888.1	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	93.939	33	2	0	1	33	1376132	1376100	432914-433014|668043-668135|843833-843918|887162-887243|949972-950254|1083644-1083731|2025319-2025397|2260075-2260225|2383993-2384186	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1376100-1376132	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
