assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008329845.1_ASM832984v1	NZ_CP031785	Lactobacillus paracasei strain 10266 chromosome, complete genome	1	753006-753138	1	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	Orphan	CGGTTTGCGCGTTTCGGAGTTCAGCAATATCAGGCAGGGCTTTGGTCGT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	NA|48aa|up_0|NZ_CP031785.1_752701_752845_+,NA|78aa|down_1|NZ_CP031785.1_754062_754296_-,NA|60aa|down_5|NZ_CP031785.1_757392_757572_+,NA|175aa|down_6|NZ_CP031785.1_757649_758174_+,NA|354aa|down_9|NZ_CP031785.1_760106_761168_-	NA|227aa|up_9|NZ_CP031785.1_742657_743338_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP031785.1_743359_744298_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP031785.1_744412_745414_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP031785.1_745452_745971_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP031785.1_746015_746444_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP031785.1_746448_747225_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP031785.1_747669_748296_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP031785.1_748356_749478_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP031785.1_749477_752603_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP031785.1_752701_752845_+	NA	NA|159aa|down_0|NZ_CP031785.1_753592_754069_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_CP031785.1_754062_754296_-	NA	NA|368aa|down_2|NZ_CP031785.1_754625_755729_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP031785.1_755939_756725_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_CP031785.1_756727_757396_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_CP031785.1_757392_757572_+	NA	NA|175aa|down_6|NZ_CP031785.1_757649_758174_+	NA	NA|211aa|down_7|NZ_CP031785.1_758407_759040_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_CP031785.1_759111_759933_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_CP031785.1_760106_761168_-	NA
GCF_008329845.1_ASM832984v1	NZ_CP031785	Lactobacillus paracasei strain 10266 chromosome, complete genome	2	1947760-1947877	2	CRISPRCasFinder	no		csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	NA,NA|125aa|down_1|NZ_CP031785.1_1950780_1951155_-,NA|141aa|down_2|NZ_CP031785.1_1951294_1951717_-,NA|56aa|down_7|NZ_CP031785.1_1957418_1957586_-	NA|386aa|up_9|NZ_CP031785.1_1934753_1935911_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_8|NZ_CP031785.1_1936176_1937004_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_7|NZ_CP031785.1_1937006_1938200_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_6|NZ_CP031785.1_1938203_1939667_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NZ_CP031785.1_1940112_1940814_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_CP031785.1_1940838_1941984_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_CP031785.1_1942090_1942888_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_CP031785.1_1942900_1944877_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP031785.1_1945205_1946033_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP031785.1_1946094_1947561_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP031785.1_1948036_1950355_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP031785.1_1950780_1951155_-	NA	NA|141aa|down_2|NZ_CP031785.1_1951294_1951717_-	NA	NA|477aa|down_3|NZ_CP031785.1_1952279_1953710_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|379aa|down_4|NZ_CP031785.1_1953804_1954941_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_5|NZ_CP031785.1_1955049_1955367_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_6|NZ_CP031785.1_1955536_1957204_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_7|NZ_CP031785.1_1957418_1957586_-	NA	NA|704aa|down_8|NZ_CP031785.1_1957621_1959733_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|164aa|down_9|NZ_CP031785.1_1959719_1960211_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]
GCF_008329845.1_ASM832984v1	NZ_CP031785	Lactobacillus paracasei strain 10266 chromosome, complete genome	3	2298816-2300897	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	Type II-A,Type II-B,Type II-C	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	31,31,30	31	TypeII-A,TypeII-B,TypeII-C	csa3,DinG,WYL,csa5gr11,DEDDh,csn2,cas2,cas1,cas9,cas3	NA|367aa|up_0|NZ_CP031785.1_2297434_2298535_-,NA|265aa|down_4|NZ_CP031785.1_2307209_2308004_-,NA|389aa|down_5|NZ_CP031785.1_2308004_2309171_-,NA|108aa|down_7|NZ_CP031785.1_2309837_2310161_+	NA|444aa|up_9|NZ_CP031785.1_2284498_2285830_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_8|NZ_CP031785.1_2286035_2287454_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_7|NZ_CP031785.1_2287744_2288311_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP031785.1_2288437_2289886_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP031785.1_2290056_2291895_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP031785.1_2292346_2293204_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP031785.1_2293341_2294973_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP031785.1_2294969_2296661_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP031785.1_2296857_2297283_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP031785.1_2297434_2298535_-	NA	csn2|226aa|down_0|NZ_CP031785.1_2300921_2301599_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP031785.1_2301595_2301901_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP031785.1_2301878_2302784_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1361aa|down_3|NZ_CP031785.1_2302978_2307061_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NZ_CP031785.1_2307209_2308004_-	NA	NA|389aa|down_5|NZ_CP031785.1_2308004_2309171_-	NA	NA|125aa|down_6|NZ_CP031785.1_2309394_2309769_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NZ_CP031785.1_2309837_2310161_+	NA	NA|576aa|down_8|NZ_CP031785.1_2310232_2311960_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP031785.1_2311940_2313683_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
