assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008329665.1_ASM832966v1	NZ_CP043478	Escherichia coli strain ST130 chromosome, complete genome	1	1247256-1247352	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP043478.1_1235135_1236497_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP043478.1_1236553_1237855_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP043478.1_1237876_1239022_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP043478.1_1239150_1239936_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP043478.1_1239946_1241182_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP043478.1_1241203_1242253_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP043478.1_1242569_1244237_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP043478.1_1244246_1245506_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP043478.1_1245516_1246332_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP043478.1_1246328_1247222_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP043478.1_1247416_1248484_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP043478.1_1248480_1248990_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP043478.1_1249107_1249830_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP043478.1_1249832_1250327_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP043478.1_1250500_1251886_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP043478.1_1251921_1252443_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP043478.1_1252550_1252763_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP043478.1_1252764_1253631_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP043478.1_1254111_1254654_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP043478.1_1254873_1255566_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_008329665.1_ASM832966v1	NZ_CP043478	Escherichia coli strain ST130 chromosome, complete genome	2	1880430-1880521	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|70aa|down_9|NZ_CP043478.1_1891060_1891270_+	NA|231aa|up_9|NZ_CP043478.1_1869620_1870313_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP043478.1_1870442_1871615_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP043478.1_1871614_1874161_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP043478.1_1874157_1874757_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP043478.1_1874849_1875155_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP043478.1_1875154_1876075_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP043478.1_1876334_1877594_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP043478.1_1877882_1879124_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP043478.1_1879161_1879389_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP043478.1_1879409_1880006_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP043478.1_1880634_1881963_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP043478.1_1881983_1882478_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP043478.1_1882488_1883079_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP043478.1_1883088_1883889_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP043478.1_1883896_1884283_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP043478.1_1884294_1884987_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP043478.1_1884986_1886078_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP043478.1_1886365_1887004_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP043478.1_1887043_1891006_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP043478.1_1891060_1891270_+	NA
GCF_008329665.1_ASM832966v1	NZ_CP043478	Escherichia coli strain ST130 chromosome, complete genome	3	3837388-3837540	1,3	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CCCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	31,29	0	0	NA	NA	I-E:I-E	2,2	2	TypeI-E	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP043478.1_3829201_3829963_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP043478.1_3829943_3830993_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP043478.1_3830989_3831469_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP043478.1_3831468_3832179_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP043478.1_3832197_3832509_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP043478.1_3832702_3833026_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP043478.1_3833075_3833681_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP043478.1_3833680_3835108_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP043478.1_3835109_3836018_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP043478.1_3836269_3837307_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP043478.1_3837636_3837930_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP043478.1_3837926_3838850_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP043478.1_3838846_3839497_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP043478.1_3839478_3840225_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP043478.1_3840235_3841291_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP043478.1_3841305_3841842_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP043478.1_3841838_3843401_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP043478.1_3843498_3846198_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP043478.1_3846391_3846544_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP043478.1_3846808_3847543_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_008329665.1_ASM832966v1	NZ_CP043478	Escherichia coli strain ST130 chromosome, complete genome	4	3854303-3854941	4,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,9	10	TypeI-E	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|121aa|down_3|NZ_CP043478.1_3857681_3858044_+	cas7|352aa|up_9|NZ_CP043478.1_3840235_3841291_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_CP043478.1_3841305_3841842_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP043478.1_3841838_3843401_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP043478.1_3843498_3846198_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP043478.1_3846391_3846544_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP043478.1_3846808_3847543_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP043478.1_3847616_3849329_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP043478.1_3849328_3851128_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|NZ_CP043478.1_3851443_3851809_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|388aa|up_0|NZ_CP043478.1_3852456_3853619_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|224aa|down_0|NZ_CP043478.1_3855280_3855952_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP043478.1_3856124_3856727_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP043478.1_3856740_3857646_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP043478.1_3857681_3858044_+	NA	NA|433aa|down_4|NZ_CP043478.1_3858099_3859398_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP043478.1_3859485_3861123_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP043478.1_3861350_3862142_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP043478.1_3862212_3862548_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP043478.1_3862547_3862796_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP043478.1_3862873_3865108_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
