The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043440	Cupriavidus campinensis strain MJ1 chromosome, complete genome	3605170	3058580	3064527	3605170		uncultured_Caudovirales_phage(33.33%)	9	NA	NA
WP_149137125.1|3058580_3059162_-	GNAT family N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	39.5	2.2e-21
WP_149137126.1|3059260_3059620_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	44.4	4.4e-17
WP_149137127.1|3059717_3059945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149137128.1|3060050_3060722_-	exonuclease	NA	A0A2L0UZL4	Agrobacterium_phage	39.5	1.0e-35
WP_149137129.1|3060743_3061394_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_149137628.1|3061813_3062479_+	septal ring lytic transglycosylase RlpA family protein	NA	H2BCY4	Synechococcus_phage	55.3	3.9e-19
WP_149137130.1|3062556_3063492_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	38.9	1.9e-35
WP_149137131.1|3063507_3063909_+	YraN family protein	NA	NA	NA	NA	NA
WP_149137132.1|3063939_3064527_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	8.9e-15
>prophage 1
NZ_CP043439	Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence	347552	41736	90064	347552	transposase,protease,integrase	Listeria_phage(25.0%)	43	39430:39443	49868:49881
39430:39443	attL	CTGGCGGATCTCAG	NA	NA	NA	NA
WP_011239934.1|41736_42882_+|integrase	tyrosine-type recombinase/integrase	integrase	A8ATJ6	Listeria_phage	27.1	9.5e-05
WP_011514892.1|42856_44515_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_149135058.1|44511_45762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135059.1|45758_46424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011514894.1|46420_46921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029309942.1|47222_48665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135060.1|54370_55606_-	PAS domain S-box protein	NA	NA	NA	NA	NA
49868:49881	attR	CTGGCGGATCTCAG	NA	NA	NA	NA
WP_149135220.1|55696_55960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135061.1|57503_57716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135062.1|57660_58590_-	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_149135063.1|58570_59149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135064.1|59726_60557_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_149135065.1|62150_62651_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_149135066.1|62660_62984_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_149135221.1|62983_64216_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_149135067.1|65051_65927_+	biphenyl-2,3-diol 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_149135068.1|66048_66855_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
WP_149135069.1|66962_67913_+	acetaldehyde dehydrogenase (acetylating)	NA	E5EQ71	Micromonas_sp._RCC1109_virus	34.4	4.8e-34
WP_149135070.1|69380_69710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135071.1|69622_70087_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_149135072.1|71155_72196_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_149135073.1|72293_73310_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_149135074.1|73335_74154_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_149135075.1|74110_74635_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_149135076.1|74681_75092_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_149135077.1|75197_76091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_149135078.1|76705_77101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135079.1|77173_78265_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_149135080.1|79850_81065_+	DUF5131 family protein	NA	Q8W6R4	Burkholderia_virus	47.9	3.3e-72
WP_029309168.1|81241_81508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135081.1|81590_81788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135082.1|81835_82261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135083.1|82581_83193_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_149135084.1|83189_83498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135085.1|83532_84267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135086.1|84456_84999_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_149135087.1|85114_86284_+|protease	metalloprotease	protease	NA	NA	NA	NA
WP_149135088.1|86348_86528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135089.1|86524_86797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135090.1|87232_87658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135091.1|87675_88032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135092.1|88044_88662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135093.1|88880_90064_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	43.5	3.3e-61
>prophage 2
NZ_CP043439	Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence	347552	159406	215372	347552	transposase,protease,integrase	Acinetobacter_phage(28.57%)	50	209906:209921	222868:222883
WP_149135079.1|159406_160498_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_149135155.1|160695_161511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135156.1|162052_162640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135157.1|165112_165628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135158.1|166419_169038_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_149135159.1|169355_170186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135160.1|170514_171528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135161.1|171739_172393_+	hypothetical protein	NA	I6NP76	Burkholderia_phage	37.6	9.9e-07
WP_149135162.1|172431_173262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135163.1|173478_175272_+	phosphoadenosine phosphosulfate sulfotransferase	NA	NA	NA	NA	NA
WP_149135164.1|175551_175980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135165.1|176172_176628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135166.1|176812_177292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135167.1|177354_177747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135168.1|178019_178859_+|protease	cysteine protease	protease	NA	NA	NA	NA
WP_149135093.1|179234_180417_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	43.5	3.3e-61
WP_149135169.1|180661_181036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135170.1|181105_181915_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_149135171.1|182377_183511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135172.1|183690_184527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135173.1|184472_185624_-	DnaJ domain-containing protein	NA	L7RC83	Acanthamoeba_polyphaga_moumouvirus	28.6	2.2e-09
WP_149135174.1|185784_186087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149135175.1|186130_186661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003049965.1|186805_189721_-|transposase	Tn3-like element IS1071 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	24.0	1.4e-52
WP_149135176.1|189835_190285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077176980.1|190281_190989_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_077176981.1|190998_191463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077176982.1|191482_191935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143274053.1|191945_192749_-	DUF2243 domain-containing protein	NA	NA	NA	NA	NA
WP_077176984.1|192869_193469_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_077176985.1|193468_193996_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_077176987.1|195583_196018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077176988.1|196027_196462_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_077176989.1|196502_197978_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_077176990.1|197974_198307_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077176991.1|199432_199786_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_077176992.1|199782_201534_+	sulfate permease	NA	A0A2H4J153	uncultured_Caudovirales_phage	22.8	1.7e-13
WP_077176993.1|201530_202280_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_077176994.1|202396_202804_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_077198917.1|202850_203201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077176996.1|203314_203761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149135093.1|204838_206021_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	43.5	3.3e-61
WP_005793020.1|207333_208137_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_100084379.1|208160_209432_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005793022.1|209428_210271_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
209906:209921	attL	TGGCACCATCAGCGAC	NA	NA	NA	NA
WP_005793023.1|210267_211140_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_005793024.1|211142_212228_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	2.0e-20
WP_005793025.1|212233_212890_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_100084380.1|212991_213792_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_005793027.1|214280_215372_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
222868:222883	attR	TGGCACCATCAGCGAC	NA	NA	NA	NA
