The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	266269	284259	4123685	transposase	Synechococcus_phage(20.0%)	16	NA	NA
WP_003435056.1|266269_266668_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003435058.1|266664_267828_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
WP_009901732.1|268082_268595_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	88.2	1.6e-84
WP_003425290.1|269044_269521_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|269526_270225_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|270236_271604_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_021360082.1|271597_272674_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.3e-64
WP_009895314.1|272667_273261_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_003436063.1|273253_274786_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_003436062.1|274796_276047_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009901735.1|276071_279878_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
WP_021360083.1|280083_280956_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	1.7e-14
WP_003436059.1|281064_281934_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
WP_003436058.1|281982_282540_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
WP_021360084.1|282577_283561_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	5.0e-79
WP_021360085.1|283590_284259_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	5.3e-24
>prophage 2
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	1252854	1328086	4123685	integrase,tRNA,portal,holin,tail,terminase,head,plate	Clostridium_phage(60.71%)	88	1249201:1249218	1326838:1326855
1249201:1249218	attL	AAGATTAAATTTTTTAAG	NA	NA	NA	NA
WP_003428375.1|1252854_1253769_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	27.4	8.1e-07
WP_003438158.1|1253810_1254983_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_009888977.1|1255029_1255842_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.3	2.7e-62
WP_003438162.1|1256030_1257371_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	56.0	1.3e-130
WP_003438164.1|1257583_1258663_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003438166.1|1258834_1259509_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_003438167.1|1259495_1260743_+	U32 family peptidase	NA	Q6DW11	Phage_TP	37.6	2.1e-58
WP_003438168.1|1260814_1262479_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_021360429.1|1262882_1264400_-	recombinase family protein	NA	I3VYZ3	Thermoanaerobacterium_phage	49.7	1.5e-127
WP_021360430.1|1264524_1265346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021361414.1|1265536_1266964_+	cell wall-binding protein Cwp26	NA	A0A2R2ZGK6	Clostridioides_phage	44.0	2.0e-76
WP_009896140.1|1267113_1267266_+	hypothetical protein	NA	J9QED5	Clostridium_phage	50.0	3.6e-05
WP_021360433.1|1268145_1268361_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J358	uncultured_Caudovirales_phage	50.0	1.0e-05
WP_021360435.1|1269705_1270062_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WF83	Clostridium_phage	42.4	8.0e-19
WP_021360436.1|1270224_1270410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360437.1|1270529_1271270_+	hypothetical protein	NA	A0A0A8WIE3	Clostridium_phage	60.0	3.8e-47
WP_095889687.1|1271665_1271920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021361415.1|1271955_1272207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077701539.1|1272791_1273970_+	helicase SNF2	NA	A0A2H4J064	uncultured_Caudovirales_phage	62.4	4.0e-139
WP_021360442.1|1273973_1274276_+	VRR-NUC domain-containing protein	NA	A0A2H4J095	uncultured_Caudovirales_phage	55.2	3.5e-23
WP_021424237.1|1274276_1275962_+	AAA family ATPase	NA	A0A2H4J7Q2	uncultured_Caudovirales_phage	55.8	1.7e-159
WP_021360444.1|1276025_1276469_+	DUF669 domain-containing protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	52.0	7.3e-38
WP_021360446.1|1276682_1278416_+	DNA polymerase B family protein	NA	A0A1B1P7M5	Bacillus_phage	55.2	2.8e-181
WP_021360447.1|1278427_1280311_+	phage/plasmid primase P4 family C-terminal domain protein	NA	H7BVJ4	unidentified_phage	56.9	5.1e-205
WP_021360448.1|1280654_1281083_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_021360449.1|1281255_1281459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360451.1|1281946_1282165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360452.1|1282609_1283176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021424238.1|1283235_1283925_+|terminase	ATPase subunit of terminase	terminase	A0A0A8WFS6	Clostridium_phage	77.7	5.2e-91
WP_109420477.1|1283914_1285171_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.5	4.1e-243
WP_021360968.1|1285175_1286579_+|portal	phage portal protein	portal	A0A0A7S0I9	Clostridium_phage	52.3	1.8e-130
WP_021417352.1|1286568_1287930_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	X5JAI9	Clostridium_phage	87.6	9.7e-190
WP_021360965.1|1287932_1288094_+	cysteine-rich CPCC family protein	NA	Q7Y4I8	Streptococcus_phage	60.4	5.2e-10
WP_021360964.1|1288165_1288360_+	hypothetical protein	NA	A0A090DCN1	Clostridium_phage	89.1	7.4e-19
WP_021416624.1|1288383_1288977_+	phage minor structural GP20 family protein	NA	NA	NA	NA	NA
WP_021360962.1|1288992_1289373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018112729.1|1289384_1290404_+	hypothetical protein	NA	S5MA55	Brevibacillus_phage	45.1	1.1e-76
WP_021360961.1|1290414_1290759_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0A7RTX9	Clostridium_phage	69.4	9.7e-38
WP_021360960.1|1290758_1291106_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	93.9	1.4e-55
WP_021361515.1|1291105_1291531_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.5	2.1e-74
WP_009896628.1|1291523_1291961_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.9	5.1e-76
WP_009896630.1|1291953_1292130_+	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	94.8	6.5e-22
WP_021360348.1|1292130_1293441_+|tail	phage tail sheath family protein	tail	X5JAJ1	Clostridium_phage	92.2	8.4e-231
WP_021360349.1|1293480_1293939_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	75.0	5.4e-60
WP_021360350.1|1293992_1294250_+	hypothetical protein	NA	X5JB36	Clostridium_phage	84.7	7.0e-33
WP_009894229.1|1294251_1294692_+|portal	phage portal protein	portal	A0A0A8WJT4	Clostridium_phage	65.8	2.0e-48
WP_074048437.1|1294691_1294886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360351.1|1294953_1295745_+	SHOCT domain-containing protein	NA	X5JB37	Clostridium_phage	38.0	3.0e-34
WP_021361514.1|1295811_1298154_+	tape measure protein	NA	X5JAB7	Clostridium_phage	84.5	0.0e+00
WP_021361513.1|1298169_1298859_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	96.1	6.3e-121
WP_021417351.1|1298851_1300744_+	nlpC/P60 family protein	NA	A3QSB3	Clostridium_virus	92.7	0.0e+00
WP_009896657.1|1300757_1301018_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	90.7	2.0e-35
WP_009896659.1|1301022_1301442_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	100.0	7.9e-74
WP_032516650.1|1301442_1302492_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	96.8	1.7e-189
WP_021361396.1|1302484_1303102_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	91.7	8.0e-107
WP_021427194.1|1303117_1304122_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	78.8	1.2e-125
WP_021360356.1|1304138_1305680_+	hypothetical protein	NA	J9QE87	Clostridium_phage	51.8	1.3e-76
WP_021360357.1|1305693_1305987_+	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	77.3	2.9e-35
WP_021361398.1|1305986_1306169_+	hypothetical protein	NA	A0A090D845	Clostridium_phage	91.7	7.9e-23
WP_021360359.1|1306203_1306419_+	hypothetical protein	NA	A0A1V0DZY5	Clostridioides_phage	85.9	8.5e-24
WP_021361399.1|1306431_1307472_+	hypothetical protein	NA	A0A0A8WIB8	Clostridium_phage	98.8	6.3e-189
WP_021360361.1|1307472_1307796_+	hypothetical protein	NA	A0A0A8WJ34	Clostridium_phage	99.1	7.2e-51
WP_021361401.1|1307797_1307935_+	XkdX family protein	NA	J9QD16	Clostridium_phage	95.5	1.7e-17
WP_009898415.1|1307966_1308197_+	membrane protein	NA	A0A0A8WJR7	Clostridium_phage	100.0	7.4e-34
WP_009898413.1|1308216_1308474_+|holin	holin	holin	A0A0A8WJ67	Clostridium_phage	100.0	4.1e-41
WP_021360454.1|1308473_1309304_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WFX1	Clostridium_phage	80.6	9.0e-122
WP_021360455.1|1309449_1309833_-	hypothetical protein	NA	A0A1V0E007	Clostridioides_phage	72.4	6.6e-43
WP_025989185.1|1310508_1310724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360457.1|1311032_1311422_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	56.7	5.6e-34
WP_003433368.1|1311745_1312255_+	glycopeptide resistance protein VanZ1	NA	NA	NA	NA	NA
WP_003419284.1|1312356_1312551_-	hypothetical protein	NA	A0A0A8WI84	Clostridium_phage	39.6	4.7e-05
WP_003438191.1|1313066_1313459_-	sigma-70 family RNA polymerase sigma factor	NA	S6ANS0	Bacillus_phage	38.6	5.7e-10
WP_074048419.1|1314013_1314388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021360459.1|1314371_1315082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009902379.1|1315101_1315521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021359093.1|1315510_1316035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889023.1|1316346_1316904_+	elongation factor P	NA	NA	NA	NA	NA
WP_003428343.1|1316995_1317451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428341.1|1317613_1318324_+	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	33.9	4.2e-27
WP_021360461.1|1318377_1319448_+	radical SAM protein	NA	NA	NA	NA	NA
WP_021360462.1|1319475_1323030_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_021360463.1|1323056_1324337_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003419333.1|1324439_1324808_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_003428334.1|1324804_1326157_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_003419338.1|1326194_1326467_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_003419342.1|1326531_1326759_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_009889030.1|1326866_1327382_+	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
1326838:1326855	attR	AAGATTAAATTTTTTAAG	NA	NA	NA	NA
WP_003438222.1|1327390_1328086_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	1390888	1460924	4123685	transposase,integrase,tRNA,protease,portal,tail,plate	Clostridium_phage(42.86%)	69	1390111:1390129	1462400:1462418
1390111:1390129	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_077738090.1|1390888_1392007_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	8.2e-110
WP_003428232.1|1392442_1393348_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1393478_1394408_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_011861174.1|1394407_1394506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003419491.1|1394511_1394769_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1395008_1395854_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1395978_1398090_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1398355_1399099_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438321.1|1399256_1400504_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	5.1e-52
WP_003419503.1|1400538_1400784_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1400793_1402017_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1402129_1402864_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_003438328.1|1402986_1405398_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_003433322.1|1405400_1406459_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_003433320.1|1406452_1407787_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_021360474.1|1407773_1408316_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1408603_1409650_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1409825_1411367_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1412001_1413783_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_021360477.1|1413864_1414395_-	signal peptidase I	NA	NA	NA	NA	NA
WP_003438350.1|1414434_1415259_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1415515_1416424_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1416567_1418013_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1418324_1418777_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438357.1|1419111_1420308_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003438360.1|1420692_1421643_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1421803_1422556_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009896237.1|1422647_1423424_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1423738_1425637_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1425764_1426886_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1427084_1427417_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021367719.1|1427403_1428462_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_003438380.1|1428454_1429525_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1429626_1430163_+	lipoprotein	NA	NA	NA	NA	NA
WP_016729592.1|1430278_1430986_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.9	4.3e-56
WP_021360481.1|1430987_1431704_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_021360482.1|1431705_1432464_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_021360483.1|1432598_1433987_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_009896253.1|1434062_1434884_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1435134_1436289_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1436471_1436672_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1437092_1437521_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1437663_1438419_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_021417165.1|1438539_1438956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011861186.1|1439119_1439626_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	66.5	1.5e-55
WP_003428185.1|1439707_1440028_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_011861187.1|1440196_1440394_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1440498_1440939_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_021360485.1|1441187_1441631_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.1	2.2e-18
WP_003438414.1|1441635_1442700_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
WP_003419646.1|1442713_1443142_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009902432.1|1443267_1443714_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1443740_1443908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438437.1|1443907_1446361_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1446360_1446783_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_021360487.1|1447064_1448594_+	nlpC/P60 family protein	NA	A0A1V0DZX6	Clostridioides_phage	81.2	2.0e-244
WP_003438447.1|1448609_1448936_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1448935_1449364_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_021360488.1|1449356_1450409_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	70.7	4.6e-139
WP_003428156.1|1450405_1451104_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_021360489.1|1451104_1452091_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	4.4e-59
WP_021360490.1|1452112_1457344_+	regulator of chromosome condensation (RCC1) repeat family protein	NA	A0A0A8WEY5	Clostridium_phage	31.1	1.5e-81
WP_009902444.1|1457360_1457714_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	9.4e-12
WP_003419670.1|1457976_1458237_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1458457_1458913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1459140_1459560_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1459858_1460068_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1460087_1460309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1460525_1460924_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1462400:1462418	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 4
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	1551606	1561333	4123685		Pandoravirus(37.5%)	11	NA	NA
WP_009896362.1|1551606_1552191_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.4e-57
WP_074033692.1|1552183_1553542_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.3e-37
WP_003438634.1|1553531_1554275_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_021360504.1|1554308_1555010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1555035_1555608_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_011861218.1|1555659_1556463_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.4e-23
WP_011861219.1|1556473_1556839_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|1556831_1557338_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|1557318_1558104_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|1558358_1560149_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_011861220.1|1560160_1561333_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.7e-37
>prophage 5
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	1688112	1741933	4123685	integrase,portal,tail,terminase,head,plate	Clostridium_phage(74.07%)	68	1680518:1680534	1692722:1692738
1680518:1680534	attL	AAAAATAGCATACATAA	NA	NA	NA	NA
WP_074048416.1|1688112_1689807_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	1.6e-48
WP_003433492.1|1690167_1691298_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.5	5.0e-216
WP_021417194.1|1691422_1692148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021417202.1|1692150_1692552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021424455.1|1692548_1693391_-	ParA family protein	NA	E9LUK9	Lactobacillus_phage	33.6	1.7e-27
1692722:1692738	attR	TTATGTATGCTATTTTT	NA	NA	NA	NA
WP_021417203.1|1693575_1694049_-	ImmA/IrrE family metallo-endopeptidase	NA	B6SBW7	Clostridium_virus	94.9	1.8e-79
WP_021417199.1|1694066_1694768_-	helix-turn-helix transcriptional regulator	NA	B6SBW8	Clostridium_virus	95.6	1.5e-29
WP_021417191.1|1694946_1695159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_021427192.1|1695321_1696089_+	BRO family, N-terminal domain protein	NA	A0A2R2ZGW3	Clostridioides_phage	44.2	1.8e-36
WP_095895286.1|1696146_1696812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095895284.1|1696947_1697130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429816.1|1697291_1697684_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	89.9	5.3e-56
WP_009902591.1|1697884_1698322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433514.1|1698333_1699500_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.1e-117
WP_021417192.1|1699514_1699850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1699902_1700475_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1700497_1701070_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_021427189.1|1701069_1703028_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	2.0e-265
WP_021417200.1|1703039_1705457_+	virulence-associated E family protein	NA	A0A0A7RTG3	Clostridium_phage	68.0	0.0e+00
WP_003429828.1|1705737_1706064_+	VRR-NUC domain-containing protein	NA	A0A0A7RTE1	Clostridium_phage	51.7	8.4e-15
WP_032516648.1|1706012_1707383_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.5	3.8e-157
WP_003429831.1|1707536_1708016_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	44.6	4.2e-31
WP_021394824.1|1708154_1708412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021394825.1|1708557_1709493_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
WP_021394826.1|1709511_1710096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429835.1|1710108_1710801_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	98.7	3.4e-122
WP_011861026.1|1710790_1712032_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.0	2.1e-244
WP_021395823.1|1712037_1713477_+|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.6	6.9e-279
WP_021417107.1|1713466_1715002_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	X5JAI9	Clostridium_phage	70.7	6.9e-192
WP_009888832.1|1715003_1715252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021365217.1|1715319_1715883_+	phage minor structural GP20 family protein	NA	A0A0A8WFU8	Clostridium_phage	87.2	2.5e-83
WP_021417100.1|1715894_1716785_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.7	1.7e-166
WP_021417101.1|1716803_1717037_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	94.8	2.0e-31
WP_021417106.1|1717046_1717448_+	hypothetical protein	NA	A0A0A8WIE8	Clostridium_phage	91.0	1.6e-63
WP_021417114.1|1717441_1717804_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	80.8	1.1e-47
WP_021417115.1|1717803_1718229_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	67.4	3.3e-51
WP_021417110.1|1718221_1718659_+	hypothetical protein	NA	X5JAB5	Clostridium_phage	93.1	6.3e-74
WP_021417113.1|1718651_1718828_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	86.2	5.1e-19
WP_021417108.1|1718828_1720139_+|tail	phage tail sheath family protein	tail	A0A0A8WIF0	Clostridium_phage	94.3	1.5e-235
WP_032516644.1|1720159_1720636_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	91.4	9.5e-76
WP_021417102.1|1720688_1720946_+	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	82.4	5.0e-31
WP_021417109.1|1720950_1721391_+	phage XkdN-like family protein	NA	X5JAB6	Clostridium_phage	97.9	6.1e-77
WP_074033800.1|1721390_1721585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021369367.1|1721713_1721872_+	hypothetical protein	NA	J9QED5	Clostridium_phage	56.9	1.5e-06
WP_004454585.1|1722588_1722777_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	57.6	2.6e-08
WP_021417111.1|1722896_1723721_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	74.6	1.8e-90
WP_021424500.1|1724003_1724522_+	zinc ribbon domain-containing protein	NA	A0A0A8WFW4	Clostridium_phage	49.2	1.2e-39
WP_021427213.1|1724603_1726997_+	tape measure protein	NA	X5JAB7	Clostridium_phage	43.6	4.1e-159
WP_021417119.1|1727012_1727714_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WFE5	Clostridium_phage	96.1	2.1e-124
WP_021417117.1|1727706_1729662_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase	NA	A0A0A8WIF2	Clostridium_phage	76.5	2.4e-266
WP_021400922.1|1729675_1729936_+	DUF2577 domain-containing protein	NA	A3QSB4	Clostridium_virus	86.0	8.4e-34
WP_021373355.1|1729940_1730360_+	DUF2634 domain-containing protein	NA	X5JB38	Clostridium_phage	99.3	3.0e-73
WP_074105624.1|1730360_1731410_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	96.0	5.4e-188
WP_021361396.1|1731402_1732020_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	91.7	8.0e-107
WP_021427194.1|1732035_1733040_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	78.8	1.2e-125
WP_021360356.1|1733056_1734598_+	hypothetical protein	NA	J9QE87	Clostridium_phage	51.8	1.3e-76
WP_021360357.1|1734611_1734905_+	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	77.3	2.9e-35
WP_021361398.1|1734904_1735087_+	hypothetical protein	NA	A0A090D845	Clostridium_phage	91.7	7.9e-23
WP_021360359.1|1735121_1735337_+	hypothetical protein	NA	A0A1V0DZY5	Clostridioides_phage	85.9	8.5e-24
WP_021361399.1|1735349_1736390_+	hypothetical protein	NA	A0A0A8WIB8	Clostridium_phage	98.8	6.3e-189
WP_021360361.1|1736390_1736714_+	hypothetical protein	NA	A0A0A8WJ34	Clostridium_phage	99.1	7.2e-51
WP_021361401.1|1736715_1736853_+	XkdX family protein	NA	J9QD16	Clostridium_phage	95.5	1.7e-17
WP_009898415.1|1736884_1737115_+	membrane protein	NA	A0A0A8WJR7	Clostridium_phage	100.0	7.4e-34
WP_021394841.1|1737134_1737392_+	membrane protein	NA	A3QSC5	Clostridium_virus	95.3	1.3e-39
WP_003429958.1|1737652_1738516_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009902619.1|1738594_1739407_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	95.2	2.0e-150
WP_009902620.1|1739693_1741703_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_021395837.1|1741747_1741933_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	60.3	1.7e-12
>prophage 6
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	2219442	2231436	4123685		Streptococcus_phage(100.0%)	12	NA	NA
WP_021361457.1|2219442_2220345_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	51.0	4.2e-80
WP_021361458.1|2220364_2221369_-	hypothetical protein	NA	A0A1S5SEZ8	Streptococcus_phage	68.1	2.0e-131
WP_021361459.1|2221365_2223561_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	61.6	1.3e-191
WP_021361460.1|2223560_2226011_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	74.8	0.0e+00
WP_021361461.1|2225997_2226387_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	71.4	3.4e-47
WP_021361462.1|2226499_2227003_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	55.4	1.1e-48
WP_021361463.1|2227020_2227518_-	antirestriction family protein	NA	NA	NA	NA	NA
WP_021361464.1|2227713_2228199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006354966.1|2228286_2228508_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_021361465.1|2228508_2228643_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_074048414.1|2228657_2229848_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.2	1.5e-138
WP_021361467.1|2230041_2231436_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.9	6.7e-178
>prophage 7
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	3113039	3121992	4123685		Catovirus(50.0%)	8	NA	NA
WP_021359576.1|3113039_3114953_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3115036_3116128_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_011861675.1|3116133_3117429_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
WP_003426498.1|3117454_3118207_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_021360890.1|3118254_3119163_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3119184_3119934_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454110.1|3119962_3121153_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009897935.1|3121152_3121992_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 8
NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4123685	3777806	3799823	4123685	transposase	Streptococcus_phage(78.57%)	24	NA	NA
WP_009898603.1|3777806_3780572_-	magnesium-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.6	5.8e-48
WP_032510328.1|3780737_3781049_-	DUF3784 domain-containing protein	NA	NA	NA	NA	NA
WP_009898607.1|3781064_3781295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009898609.1|3781295_3781973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.0	3.3e-13
WP_009898610.1|3782110_3782614_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_016729346.1|3782629_3785293_-	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.8	1.8e-38
WP_022617708.1|3785385_3785595_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_021395533.1|3785544_3785880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018112598.1|3786078_3786981_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.3	5.8e-82
WP_021361562.1|3786997_3788005_-	lysozyme-like family protein	NA	A0A1S5SEZ8	Streptococcus_phage	69.3	3.6e-133
WP_021361563.1|3788001_3790206_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	51.3	1.9e-182
WP_009898619.1|3790205_3792656_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.2	0.0e+00
WP_008393094.1|3792633_3793032_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_009898623.1|3793149_3793653_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.2	4.4e-55
WP_021361564.1|3793670_3794174_-	antirestriction family protein	NA	NA	NA	NA	NA
WP_022616644.1|3794092_3794389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021401231.1|3794487_3795282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323342.1|3795320_3795542_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_009898627.1|3795542_3795677_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_021361566.1|3795689_3796886_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.8	1.4e-147
WP_021361567.1|3797070_3798465_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.3	1.0e-173
WP_021361568.1|3798558_3798996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021361569.1|3799097_3799481_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	57.0	6.8e-32
WP_021361570.1|3799496_3799823_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	4.0e-25
